-
1
-
-
58449105125
-
The temporal dynamics of slightly deleterious mutations in Escherichia coli and Shigella spp
-
Balbi, K. J., E. P. Rocha, and E. J. Feil, 2009 The temporal dynamics of slightly deleterious mutations in Escherichia coli and Shigella spp. Mol. Biol. Evol. 26: 345-355.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 345-355
-
-
Balbi, K.J.1
Rocha, E.P.2
Feil, E.J.3
-
2
-
-
77957746208
-
Genome-wide mutational diversity in an evolving population of Escherichia coli
-
Barrick, J. E., and R. E. Lenski, 2009 Genome-wide mutational diversity in an evolving population of Escherichia coli. Cold Spring Harb. Symp. Quant. Biol. 74: 119-129.
-
(2009)
Cold Spring Harb. Symp. Quant. Biol.
, vol.74
, pp. 119-129
-
-
Barrick, J.E.1
Lenski, R.E.2
-
3
-
-
70350641005
-
Genome evolution and adaptation in a long-term experiment with Escherichia coli
-
Barrick, J. E., D. S. Yu, S. H. Yoon, H. Jeong, T. K. Oh et al., 2009 Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461: 1243-1247.
-
(2009)
Nature
, vol.461
, pp. 1243-1247
-
-
Barrick, J.E.1
Yu, D.S.2
Yoon, S.H.3
Jeong, H.4
Oh, T.K.5
-
4
-
-
0037849904
-
Stressinduced mutagenesis in bacteria
-
Bjedov, I., O. Tenaillon, B. Gérard, V. Souza, E. Denamur et al., 2003 Stressinduced mutagenesis in bacteria. Science 300: 1404-1409.
-
(2003)
Science
, vol.300
, pp. 1404-1409
-
-
Bjedov, I.1
Tenaillon, O.2
Gérard, B.3
Souza, V.4
Denamur, E.5
-
5
-
-
0029563023
-
A method for estimating the numbers of synonymous and nonsynonymous substitutions per site
-
Comeron, J. M., 1995 A method for estimating the numbers of synonymous and nonsynonymous substitutions per site. J. Mol. Evol. 41: 1152-1159.
-
(1995)
J. Mol. Evol.
, vol.41
, pp. 1152-1159
-
-
Comeron, J.M.1
-
6
-
-
75349114758
-
Wholegenome resequencing of Escherichia coli K-12 MG1655 undergoing shortterm laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations
-
Conrad, T., A. Joyce, M. K. Applebee, C. Barrett, B. Xie et al., 2009 Wholegenome resequencing of Escherichia coli K-12 MG1655 undergoing shortterm laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations. Genome Biol. 10: R118.
-
(2009)
Genome Biol.
, vol.10
-
-
Conrad, T.1
Joyce, A.2
Applebee, M.K.3
Barrett, C.4
Xie, B.5
-
7
-
-
0034641929
-
The population genetics of ecological specialization in evolving E
-
Cooper, V. S., and R. E. Lenski, 2000 The population genetics of ecological specialization in evolving E. coli populations. Nature 407: 736-739.
-
(2000)
coli populations. Nature
, vol.407
, pp. 736-739
-
-
Cooper, V.S.1
Lenski, R.E.2
-
8
-
-
0025886466
-
A constant rate of spontaneous mutation in DNA-based microbes
-
Drake, J. W., 1991 A constant rate of spontaneous mutation in DNA-based microbes. Proc. Natl. Acad. Sci. U S A 88: 7160-7164.
-
(1991)
Proc. Natl. Acad. Sci. U S A
, vol.88
, pp. 7160-7164
-
-
Drake, J.W.1
-
9
-
-
78049445172
-
Evidence that mutation is universally biased towards AT in bacteria
-
Hershberg, R., and D. A. Petrov, 2010 Evidence that mutation is universally biased towards AT in bacteria. PLoS Genet. 6: e1001115.
-
(2010)
PLoS Genet.
, vol.6
-
-
Hershberg, R.1
Petrov, D.A.2
-
10
-
-
78049425463
-
Evidence of selection upon genomic GC-content in bacteria
-
Hildebrand, F., A. Meyer, and A. Eyre-Walker, 2010 Evidence of selection upon genomic GC-content in bacteria. PLoS Genet. 6: e1001107.
-
(2010)
PLoS Genet.
, vol.6
-
-
Hildebrand, F.1
Meyer, A.2
Eyre-Walker, A.3
-
11
-
-
0004046696
-
The Neutral Theory of Molecular Evolution
-
Cambridge University Press, Cambridge, UK
-
Kimura, M., 1983 The Neutral Theory of Molecular Evolution. Cambridge University Press, Cambridge, UK.
-
(1983)
-
-
Kimura, M.1
-
12
-
-
78449239214
-
Transition from positive to neutral in mutation fixation along with continuing rising fitness in thermal adaptive evolution
-
Kishimoto, T., L. Iijima,M. Tatsumi, N. Ono, A. Oyake et al., 2010 Transition from positive to neutral in mutation fixation along with continuing rising fitness in thermal adaptive evolution. PLoS Genet. 6: e1001164.
-
(2010)
PLoS Genet.
, vol.6
-
-
Kishimoto, T.1
Iijima, L.2
Tatsumi, M.3
Ono, N.4
Oyake, A.5
-
13
-
-
77954265373
-
Adaptive evolution of Escherichia coli K-12 MG1655 during growth on a nonnative carbon source, L-1,2- Propanediol
-
Lee, D.-H., and B. O. Palsson, 2010 Adaptive evolution of Escherichia coli K-12 MG1655 during growth on a nonnative carbon source, L-1,2- Propanediol. Appl. Environ. Microbiol. 76: 4158-4168.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 4158-4168
-
-
Lee, D.-H.1
Palsson, B.O.2
-
14
-
-
1842472689
-
Phenotypic and genomic evolution during a 20,000- generation experiment with the bacterium Escherichia coli
-
Lenski, R. E., 2004 Phenotypic and genomic evolution during a 20,000- generation experiment with the bacterium Escherichia coli. Plant Breed. Rev. 24: 225-265.
-
(2004)
Plant Breed. Rev.
, vol.24
, pp. 225-265
-
-
Lenski, R.E.1
-
15
-
-
56649099178
-
Whole-genome mutational biases in bacteria
-
Lind, P. A., and D. I. Andersson, 2008 Whole-genome mutational biases in bacteria. Proc. Natl. Acad. Sci. U S A 105: 17878-17883.
-
(2008)
Proc. Natl. Acad. Sci. U S A
, vol.105
, pp. 17878-17883
-
-
Lind, P.A.1
Andersson, D.I.2
-
16
-
-
30744475434
-
The origins of eukaryotic gene structure
-
Lynch, M., 2006 The origins of eukaryotic gene structure. Mol. Biol. Evol. 23: 450-468.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 450-468
-
-
Lynch, M.1
-
17
-
-
77955090647
-
Evolution of the mutation rate
-
Lynch, M., 2010 Evolution of the mutation rate. Trends Genet. 26: 345-352.
-
(2010)
Trends Genet.
, vol.26
, pp. 345-352
-
-
Lynch, M.1
-
18
-
-
75749144287
-
Experimental evolution of a plant pathogen into a legume symbiont
-
Marchetti, M., D. Capela, M. Glew, S. Cruveiller, B. Chane-Woon-Ming et al., 2010 Experimental evolution of a plant pathogen into a legume symbiont. PLoS Biol. 8: e1000280.
-
(2010)
PLoS Biol.
, vol.8
-
-
Marchetti, M.1
Capela, D.2
Glew, M.3
Cruveiller, S.4
Chane-Woon-Ming, B.5
-
20
-
-
34548769341
-
Evolution of global regulatory networks during a long-term experiment with Escherichia coli
-
Philippe, N., E. Crozat, R. E. Lenski, and D. Schneider, 2007 Evolution of global regulatory networks during a long-term experiment with Escherichia coli. Bioessays 29: 846-860.
-
(2007)
Bioessays
, vol.29
, pp. 846-860
-
-
Philippe, N.1
Crozat, E.2
Lenski, R.E.3
Schneider, D.4
-
21
-
-
78049437494
-
Mutational patterns cannot explain genome composition: are there any neutral sites in the genomes of bacteria?
-
Rocha, E. P. C., and E. J. Feil, 2010 Mutational patterns cannot explain genome composition: are there any neutral sites in the genomes of bacteria? PLoS Genet. 6: e11.
-
(2010)
PLoS Genet
, vol.6
-
-
Rocha, E.P.C.1
Feil, E.J.2
-
23
-
-
0028995991
-
Mutation and adaptation: the directed mutation controversy in evolutionary perspective
-
Sniegowski, P. D., and R. E. Lenski, 1995 Mutation and adaptation: the directed mutation controversy in evolutionary perspective. Annu. Rev. Ecol. Syst. 26: 553-578.
-
(1995)
Annu. Rev. Ecol. Syst.
, vol.26
, pp. 553-578
-
-
Sniegowski, P.D.1
Lenski, R.E.2
-
24
-
-
0030620273
-
Evolution of high mutation rates in experimental populations of Escherichia coli
-
Sniegowski, P. D., P. J. Gerrish, and R. E. Lenski, 1997 Evolution of high mutation rates in experimental populations of Escherichia coli. Nature 387: 703-705.
-
(1997)
Nature
, vol.387
, pp. 703-705
-
-
Sniegowski, P.D.1
Gerrish, P.J.2
Lenski, R.E.3
-
25
-
-
0344464730
-
Libsequence: a C++ class library for evolutionary genetic analysis
-
Thornton K., 2003 Libsequence: a C++ class library for evolutionary genetic analysis. Bioinformatics 19: 2325-2327.
-
(2003)
Bioinformatics
, vol.19
, pp. 2325-2327
-
-
Thornton, K.1
-
26
-
-
59249089471
-
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
-
Touchon, M., C. Hoede, O. Tenaillon, V. Barbe, S. Baeriswyl et al., 2009 Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet. 5: e1000344.
-
(2009)
PLoS Genet.
, vol.5
-
-
Touchon, M.1
Hoede, C.2
Tenaillon, O.3
Barbe, V.4
Baeriswyl, S.5
-
27
-
-
33744482546
-
Comprehensive mutation identification in an evolved bacterial cooperator and its cheating ancestor
-
Velicer, G. J., G. Raddatz, H. Keller, S. Deiss, C. Lanz et al., 2006 Comprehensive mutation identification in an evolved bacterial cooperator and its cheating ancestor. Proc. Natl. Acad. Sci. U S A 103: 8107-8112.
-
(2006)
Proc. Natl. Acad. Sci. U S A
, vol.103
, pp. 8107-8112
-
-
Velicer, G.J.1
Raddatz, G.2
Keller, H.3
Deiss, S.4
Lanz, C.5
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