Simulated two-dimensional electronic spectroscopy of the eight-bacteriochlorophyll FMO complex

Journal of Chemical Physics

Volumn 141, Issue 23, 2014, Pages

  Yeh, Shu Hao ^a   Kais, Sabre ^a,b  

^a PURDUE UNIVERSITY   (United States)

^b HAMAD BIN KHALIFA UNIVERSITY   (Qatar)

Author keywords

[No Author keywords available]

Indexed keywords

ANTENNAS; BACTERIA; ENERGY TRANSFER; EXCITONS; WAVE FUNCTIONS;

BACTERIOCHLOROPHYLLS; CRYSTALLOGRAPHIC STUDIES; ELECTRONIC SPECTRUM; EXCITONIC ENERGY; GREEN SULFUR BACTERIA; PHOTOSYNTHETIC SYSTEMS; REACTION CENTER; TWO-DIMENSIONAL ELECTRONIC SPECTROSCOPIES;

CHLOROPHYLL;

APOPROTEIN; BACTERIAL PROTEIN; BACTERIOCHLOROPHYLL; FMO BACTERIOCHLOROPHYLL PROTEIN, BACTERIA; LIGHT HARVESTING SYSTEM;

ABSORPTION; CHEMICAL STRUCTURE; CHEMISTRY; CHLOROBI; ELECTRON; ENERGY TRANSFER; LIGHT HARVESTING SYSTEM; METABOLISM; PHOTON; SPECTROSCOPY; TEMPERATURE;

ABSORPTION, PHYSICOCHEMICAL; APOPROTEINS; BACTERIAL PROTEINS; BACTERIOCHLOROPHYLLS; CHLOROBI; ELECTRONS; ENERGY TRANSFER; LIGHT-HARVESTING PROTEIN COMPLEXES; MODELS, MOLECULAR; PHOTONS; SPECTRUM ANALYSIS; TEMPERATURE;

EID: 84919686318     PISSN: 00219606     EISSN: 10897690     Source Type: Journal    
DOI: 10.1063/1.4903546     Document Type: Article

References (51)

1. Photosynthetic Excitons, edited by H. van Amerongen, L. Valkunas, and R. van Grondelle (World Scientific, Singapore, 2000).
2. Molecular Mechanisms of Photosynthesis, edited by R. E. Blankenship (Blackwell Science, Oxford, 2002).
3. T. Renger, V. May, and O. Kuhn, Phys. Rep. 343, 137 (2001). 10.1016/S0370-1573(00)00078-8
4. R. E. Fenna and B. W. Matthews, Nature (London) 258, 573 (1975). 10.1038/258573a0
5. C. Sybesma and J. M. Olson, Proc. Natl. Acad. Sci. U.S.A. 49, 248 (1963). 10.1073/pnas.49.2.248
6. A. Ishizaki, T. R. Calhoun, G. S. Schlau-Cohen, and G. R. Fleming, Phys. Chem. Chem. Phys. 12, 7319 (2010). 10.1039/c003389h
7. R. van Grondelle and V. I. Novoderezhkin, Phys. Chem. Chem. Phys. 8, 793 (2006). 10.1039/b514032c
8. G. S. Engel, T. R. Calhoun, E. L. Read, T. K. Ahn, T. Mancal, Y. C. Cheng, R. E. Blankenship, and G. R. Fleming, Nature (London) 446, 782 (2007). 10.1038/nature05678
9. H. Lee, Y. C. Cheng, and G. R. Fleming, Science 316, 1462 (2007). 10.1126/science.1142188
10. T. R. Calhoun, N. S. Ginsberg, G. S. Schlau-Cohen, Y.-C. Cheng, M. Ballottari, R. Bassi, and G. R. Fleming, J. Phys. Chem. B 113, 16291 (2009). 10.1021/jp908300c
11. G. Panitchayangkoon, D. Hayes, K. A. Fransted, J. R. Caram, E. Harel, J. Wen, R. E. Blankenship, and G. S. Engel, Proc. Natl. Acad. Sci. U.S.A. 107, 12766 (2010). 10.1073/pnas.1005484107
12. E. Collini, C. Y. Wong, K. E. Wilk, P. M. G. Curmi, P. Brumer, and G. D. Scholes, Nature (London) 463, 644 (2010). 10.1038/nature08811
13. K. Huang and A. Rhys, Proc. R. Soc. London, Ser. A 204, 406 (1950). 10.1098/rspa.1950.0184
14. M. Mohseni, P. Rebentrost, S. Lloyd, and A. Aspuru-Guzik, J. Chem. Phys. 129, 174106 (2008). 10.1063/1.3002335
15. J. Cao and R. J. Silbey, J. Phys. Chem. A 113, 13825 (2009). 10.1021/jp9032589
16. F. Caruso, A. W. Chin, A. Datta, S. F. Huelga, and M. B. Plenio, Phys. Rev. A 81, 062346 (2010). 10.1103/PhysRevA.81.062346
17. N. Christensson, H. F. Kauffmann, T. Pullerits, and T. Mancal, J. Phys. Chem. B 116, 7449 (2012). 10.1021/jp304649c
18. J. Schulze, M. Torbjornsson, O. Kuehn, and T. Pullerits, New J. Phys. 16, 045010 (2014). 10.1088/1367-2630/16/4/045010
19. A. W. Chin, J. Prior, R. Rosenbach, F. Caycedo-Soler, S. F. Huelga, and M. B. Plenio, Nat. Phys. 9, 113 (2013). 10.1038/nphys2515
20. F. D. Fuller, J. Pan, A. Gelzinis, V. Butkus, S. S. Senlik, D. E. Wilcox, C. F. Yocum, L. Valkunas, D. Abramavicius, and J. P. Ogilvie, Nat. Chem. 6, 706 (published online). 10.1038/nchem.2005
21. A. Halpin, P. J. M. Johnson, R. Tempelaar, R. S. Murphy, J. Knoester, T. L. C. Jansen, and R. J. D. Miller, Nat. Chem. 6, 196 (2014). 10.1038/nchem.1834
22. V. Tiwari, W. K. Peters, and D. M. Jonas, Proc. Natl. Acad. Sci. U.S.A. 110, 1203 (2013). 10.1073/pnas.1211157110
23. A. Ben-Shem, F. Frolow, and N. Nelson, FEBS Lett. 564, 274 (2004). 10.1016/S0014-5793(04)00360-6
24. D. E. Tronrud, J. Z. Wen, L. Gay, and R. E. Blankenship, Photosynth. Res. 100, 79 (2009). 10.1007/s11120-009-9430-6
25. M. S. A. Busch, F. Mueh, M. E.-A. Madjet, and T. Renger, J. Phys. Chem. Lett. 2, 93 (2011). 10.1021/jz101541b
26. Y. Tanimura and R. Kubo, J. Phys. Soc. Jpn. 58, 101 (1989). 10.1143/JPSJ.58.101
27. Y. Tanimura, J. Phys. Soc. Jpn. 75, 082001 (2006). 10.1143/JPSJ.75.082001
28. A. Ishizaki and G. R. Fleming, J. Chem. Phys. 130, 234110 (2009). 10.1063/1.3155214
29. A. Ishizaki and G. R. Fleming, J. Chem. Phys. 130, 234111 (2009). 10.1063/1.3155372
30. J. Strumpfer and K. Schulten, J. Chem. Phys. 131, 225101 (2009). 10.1063/1.3271348
31. J. Strumpfer and K. Schulten, J. Chem. Phys. 134, 095102 (2011). 10.1063/1.3557042
32. J. Zhu, S. Kais, P. Rebentrost, and A. Aspuru-Guzik, J. Phys. Chem. B 115, 1531 (2011). 10.1021/jp109559p
33. J. Zhu, S. Kais, A. Aspuru-Guzik, S. Rodriques, B. Brock, and P. J. Love, J. Chem. Phys. 137, 074112 (2012). 10.1063/1.4742333
34. S.-H. Yeh, J. Zhu, and S. Kais, J. Chem. Phys. 137, 084110 (2012). 10.1063/1.4747622
35. L. Chen, R. Zheng, Q. Shi, and Y. Yan, J. Chem. Phys. 132, 024505 (2010). 10.1063/1.3293039
36. Y. Jing, L. Chen, S. Bai, and Q. Shi, J. Chem. Phys. 138, 045101 (2013). 10.1063/1.4775843
37. B. Hein, C. Kreisbeck, T. Kramer, and M. Rodriguez, New J. Phys. 14, 023018 (2012). 10.1088/1367-2630/14/2/023018
38. S. Mukamel, Principles of Nonlinear Optical Spectroscopy (Oxford University Press, New York, 1995).
39. P. Hamm and M. T. Zanni, Concepts and Methods of 2D Infrared Spectroscopy (Cambridge University Press, 2011).
40. M. Khalil, N. Demirdoven, and A. Tokmakoff, J. Phys. Chem. A 107, 5258 (2003). 10.1021/jp0219247
41. M. Cho, J. Chem. Phys. 115, 4424 (2001). 10.1063/1.1389844
42. M. Cho, Chem. Rev. 108, 1331 (2008). 10.1021/cr078377b
43. D. Abramavicius, B. Palmieri, D. V. Voronine, F. Sanda, and S. Mukamel, Chem. Rev. 109, 2350 (2009). 10.1021/cr800268n
44. Q. Shi, L. P. Chen, G. J. Nan, R. X. Xu, and Y. J. Yan, J. Chem. Phys. 130, 084105 (2009). 10.1063/1.3077918
45. A. Ishizaki and Y. Tanimura, J. Phys. Soc. Jpn. 74, 3131 (2005). 10.1143/JPSJ.74.3131
46. L. Chen, R. Zheng, Y. Jing, and Q. Shi, J. Chem. Phys. 134, 194508 (2011). 10.1063/1.3589982
47. A. Ishizaki and G. R. Fleming, Proc. Natl. Acad. Sci. U.S.A. 106, 17255 (2009). 10.1073/pnas.0908989106
48. M. H. Cho, H. M. Vaswani, T. Brixner, J. Stenger, and G. R. Fleming, J. Phys. Chem. B 109, 10542 (2005). 10.1021/jp050788d
49. M. Wendling, T. Pullerits, M. Przyjalgowski, S. Vulto, T. Aartsma, R. van Grondelle, and H. van Amerongen, J. Phys. Chem. B 104, 5825 (2000). 10.1021/jp000077+
50. M. Wendling, M. Przyjalgowski, D. Gulen, S. Vulto, T. Aartsma, R. van Grondelle, and H. van Amerongen, Photosynth. Res. 71, 99 (2002). 10.1023/A:1014947732165
51. P. Rebentrost, M. Mohseni, I. Kassal, S. Lloyd, and A. Aspuru-Guzik, New J. Phys. 11, 033003 (2009). 10.1088/1367-2630/11/3/033003