메뉴 건너뛰기




Volumn 100, Issue 2, 2009, Pages 79-87

The structural basis for the difference in absorbance spectra for the FMO antenna protein from various green sulfur bacteria

Author keywords

Absorbance spectra; Bacteriochlorophyll; Bidentate ligation; Crystal structure; FMO

Indexed keywords

BACTERIAL PROTEIN; FMO BACTERIOCHLOROPHYLL PROTEIN, BACTERIA;

EID: 67650447736     PISSN: 01668595     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11120-009-9430-6     Document Type: Article
Times cited : (277)

References (40)
  • 2
    • 6044271269 scopus 로고    scopus 로고
    • Swiss-Prot: Juggling between evolution and stability
    • 10.1093/bib/5.1.39
    • A Bairoch B Boeckmann S Ferro E Gasteiger 2004 Swiss-Prot: juggling between evolution and stability Brief Bioinform 5 39 55 10.1093/bib/5.1.39
    • (2004) Brief Bioinform , vol.5 , pp. 39-55
    • Bairoch, A.1    Boeckmann, B.2    Ferro, S.3    Gasteiger, E.4
  • 3
    • 1942436332 scopus 로고    scopus 로고
    • Evolution of photosystem I-from symmetry through pseudosymmetry to asymmetry
    • 10.1016/S0014-5793(04)00360-6
    • A BenShem F Frolow N Nelson 2004 Evolution of photosystem I-from symmetry through pseudosymmetry to asymmetry FEBS Lett 564 274 280 10.1016/S0014- 5793(04)00360-6
    • (2004) FEBS Lett , vol.564 , pp. 274-280
    • Benshem, A.1    Frolow, F.2    Nelson, N.3
  • 5
    • 0842271127 scopus 로고    scopus 로고
    • Antenna complexes from green photosynthetic bacteria
    • Kluwer Academic Publishers Dordrecht, The Netherlands
    • Blankenship RE, Matsuura K (2003) Antenna complexes from green photosynthetic bacteria. In: Green BR, Parson WW (eds) Light-harvesting antennas. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp 195-217
    • (2003) Light-harvesting Antennas , pp. 195-217
    • Blankenship, R.E.1    Matsuura, K.2    Green, B.R.3    Parson, W.W.4
  • 6
    • 0031059040 scopus 로고    scopus 로고
    • Bayesian statistical viewpoint on structure determination: Basic concepts and examples
    • DOI 10.1016/S0076-6879(97)76069-5
    • Bricogne G (1997) The Bayesian statistical viewpoint on structure determination: basic concepts and examples. In: Carter CW, Sweet RM (eds) Methods in enzymology 276A. New York, Academic Press, pp 361-423 (Pubitemid 27085614)
    • (1997) Methods in Enzymology , vol.276 , pp. 361-423
    • Bricogne, G.1
  • 8
    • 0037235076 scopus 로고    scopus 로고
    • The structure of the FMO protein from Chlorobium tepidum at 2.2 Å resolution
    • 10.1023/A:1022406703110
    • A Camara-Artigas RE Blankenship JP Allen 2003 The structure of the FMO protein from Chlorobium tepidum at 2.2 Å resolution Photosynth Res 75 49 55 10.1023/A:1022406703110
    • (2003) Photosynth Res , vol.75 , pp. 49-55
    • Camara-Artigas, A.1    Blankenship, R.E.2    Allen, J.P.3
  • 9
    • 13244281317 scopus 로고    scopus 로고
    • Coot: Model-building tools for molecular graphics
    • 10.1107/S0907444904019158
    • P Emsley K Cowtan 2004 Coot: model-building tools for molecular graphics Acta Crystallogr D Biol Crystallogr 60 2126 2132 10.1107/S0907444904019158
    • (2004) Acta Crystallogr D Biol Crystallogr , vol.60 , pp. 2126-2132
    • Emsley, P.1    Cowtan, K.2
  • 10
    • 79952608525 scopus 로고
    • Accurate bond and angle parameter for X-ray protein structure refinement
    • RA Engh R Huber 1991 Accurate bond and angle parameter for X-ray protein structure refinement Acta Crystallogr A47 392 400
    • (1991) Acta Crystallogr , vol.47 , pp. 392-400
    • Engh, R.A.1    Huber, R.2
  • 12
    • 0017340580 scopus 로고
    • Atomic coordinates for the chlorophyll core of a bacteriochlorophyll a-protein from green photosynthetic bacteria
    • 10.1016/0006-291X(77)91536-4
    • RE Fenna LF Ten Eyck BW Matthews 1977 Atomic coordinates for the chlorophyll core of a bacteriochlorophyll a-protein from green photosynthetic bacteria Biochem Biophys Res Commun 75 751 755 10.1016/0006-291X(77)91536-4
    • (1977) Biochem Biophys Res Commun , vol.75 , pp. 751-755
    • Fenna, R.E.1    Ten Eyck, L.F.2    Matthews, B.W.3
  • 13
    • 32344438831 scopus 로고    scopus 로고
    • Hexacoordination of bacteriochlorophyll in photosynthetic antenna LH1
    • 10.1021/bi0514055
    • L Fiedor 2006 Hexacoordination of bacteriochlorophyll in photosynthetic antenna LH1 Biochemistry 45 1910 1918 10.1021/bi0514055
    • (2006) Biochemistry , vol.45 , pp. 1910-1918
    • Fiedor, L.1
  • 14
    • 0030880018 scopus 로고    scopus 로고
    • Isolation and pigment composition of the antenna system of four species of green sulphur bacteria
    • 10.1023/A:1005845828676
    • C Francke J Amesz 1997 Isolation and pigment composition of the antenna system of four species of green sulphur bacteria Photosynth Res 52 137 146 10.1023/A:1005845828676
    • (1997) Photosynth Res , vol.52 , pp. 137-146
    • Francke, C.1    Amesz, J.2
  • 15
    • 0041810417 scopus 로고    scopus 로고
    • Phylogenetic taxonomy of the family Chlorobiaceae on the basis of 16S rRNA and fmo (Fenna-Matthews-Olson protein) gene sequences
    • 10.1099/ijs.0.02403-0
    • JF Imhoff 2003 Phylogenetic taxonomy of the family Chlorobiaceae on the basis of 16S rRNA and fmo (Fenna-Matthews-Olson protein) gene sequences Int J Syst Evol Microbiol 53 941 951 10.1099/ijs.0.02403-0
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 941-951
    • Imhoff, J.F.1
  • 16
    • 0031375099 scopus 로고    scopus 로고
    • Toward an integral interpretation of the optical steady-state spectra of the FMO-complex of Prosthecochloris aestuarii. 1. An investigation with linear-dichroic absorbance-detected magnetic resonance
    • RJW Louwe J Vrieze TJ Aartsma AJ Hoff 1997 Toward an integral interpretation of the optical steady-state spectra of the FMO-complex of Prosthecochloris aestuarii. 1. An investigation with linear-dichroic absorbance-detected magnetic resonance J Phys Chem B 101 51 11273 11279 10.1021/jp972215+ (Pubitemid 127627985)
    • (1997) Journal of Physical Chemistry B , vol.101 , Issue.51 , pp. 11273-11279
    • Louwe, R.J.W.1    Vrieze, J.2    Aartsma, T.J.3    Hoff, A.J.4
  • 17
    • 0031358096 scopus 로고    scopus 로고
    • Toward an integral interpretation of the optical steady-state spectra of the FMO-complex of Prosthecochloris aestuarii. 2. Exciton simulations
    • RJW Louwe J Vrieze AJ Hoff TJ Aartsma 1997 Toward an integral interpretation of the optical steady-state spectra of the FMO-complex of Prosthecochloris aestuarii. 2. Exciton simulations J Phys Chem B 101 51 11280 11287 10.1021/jp9722162 (Pubitemid 127627986)
    • (1997) Journal of Physical Chemistry B , vol.101 , Issue.51 , pp. 11280-11287
    • Louwe, R.J.W.1    Vrieze, J.2    Hoff, A.J.3    Aartsma, T.J.4
  • 20
    • 0031692614 scopus 로고    scopus 로고
    • Orientation and excitonic interactions of the Fenna-Matthews-Olson Protein in membranes of the green sulfur bacterium Chlorobium tepidum
    • 10.1023/A:1006082513522
    • AN Melkozernov JM Olson YF Li JP Allen RE Blankenship 1998 Orientation and excitonic interactions of the Fenna-Matthews-Olson Protein in membranes of the green sulfur bacterium Chlorobium tepidum Photosynth Res 56 315 328 10.1023/A:1006082513522
    • (1998) Photosynth Res , vol.56 , pp. 315-328
    • Melkozernov, A.N.1    Olson, J.M.2    Li, Y.F.3    Allen, J.P.4    Blankenship, R.E.5
  • 22
    • 2942619012 scopus 로고    scopus 로고
    • 3DCoffee: Combining protein sequences and structures within multiple sequence alignments
    • 10.1016/j.jmb.2004.04.058
    • O O'Sullivan K Suhre C Abergel DG Higgins C Notredame 2004 3DCoffee: combining protein sequences and structures within multiple sequence alignments J Mol Biol 340 385 395 10.1016/j.jmb.2004.04.058
    • (2004) J Mol Biol , vol.340 , pp. 385-395
    • O'Sullivan, O.1    Suhre, K.2    Abergel, C.3    Higgins, D.G.4    Notredame, C.5
  • 23
    • 3042725118 scopus 로고    scopus 로고
    • The FMO protein
    • 10.1023/B:PRES.0000030428.36950.43
    • JM Olson 2004 The FMO protein Photosynth Res 80 181 187 10.1023/B:PRES.0000030428.36950.43
    • (2004) Photosynth Res , vol.80 , pp. 181-187
    • Olson, J.M.1
  • 24
    • 0017134274 scopus 로고
    • Exciton interaction among chlorophyll molecules in bacteriochlorophyll a protein and bacteriochlorophyll a reaction center complexes from green bacteria
    • Errata (1976). 440, 763
    • JM Olson B Ke KH Thompson 1974 Exciton interaction among chlorophyll molecules in bacteriochlorophyll a protein and bacteriochlorophyll a reaction center complexes from green bacteria Biochim Biophys Acta 430 524 537 Errata (1976). 440, 763
    • (1974) Biochim Biophys Acta , vol.430 , pp. 524-537
    • Olson, J.M.1    Ke, B.2    Thompson, K.H.3
  • 25
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • DOI 10.1016/S0076-6879(97)76066-X
    • Otwinowski ZW, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. In: Carter CW Jr, Sweet RM (eds) Methods in Enzymology, 276A. Academic Press, New York, pp 307-326 (Pubitemid 27085611)
    • (1997) Methods in Enzymology , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 26
    • 0000124953 scopus 로고
    • Theory of the optical spectra of the bacteriochlorophyll a antenna protein trimer from Prosthecochloris aestuarii
    • 10.1007/BF00035538
    • RM Pearlstein 1992 Theory of the optical spectra of the bacteriochlorophyll a antenna protein trimer from Prosthecochloris aestuarii Photosynth Res 31 213 226 10.1007/BF00035538
    • (1992) Photosynth Res , vol.31 , pp. 213-226
    • Pearlstein, R.M.1
  • 27
    • 0032964481 scopus 로고    scopus 로고
    • Automated protein model building combined with iterative structure refinement
    • 10.1038/8263
    • A Perrakis R Morris VS Lamzin 1999 Automated protein model building combined with iterative structure refinement Nat Struct Biol 6 458 463 10.1038/8263
    • (1999) Nat Struct Biol , vol.6 , pp. 458-463
    • Perrakis, A.1    Morris, R.2    Lamzin, V.S.3
  • 28
    • 0030830134 scopus 로고    scopus 로고
    • Pump-probe anisotropies of Fenna-Matthews-Olson protein trimers from Chlorobium tepidum: A diagnostic for exciton localization?
    • S Savikhin DR Buck WS Struve 1997 Pump-probe anisotropies of Fenna-Matthews-Olson protein trimers from Chlorobium tepidum: a diagnostic for exciton localization? Biophys J 73 2090 2096 10.1016/S0006-3495(97)78239-0 (Pubitemid 27425739)
    • (1997) Biophysical Journal , vol.73 , Issue.4 , pp. 2090-2096
    • Savikhin, S.1    Buck, D.R.2    Struve, W.S.3
  • 29
    • 0000104335 scopus 로고    scopus 로고
    • Toward level-to-level energy transfers in photosynthesis: The Fenna - Matthews - Olson protein
    • S Savikhin DR Buck WS Struve 1998 Toward level-to-level energy transfers in photosynthesis: the Fenna-Matthews-Olson protein J Phys Chem B 102 5556 5565 10.1021/jp981186f (Pubitemid 128581114)
    • (1998) Journal of Physical Chemistry B , vol.102 , Issue.29 , pp. 5556-5565
    • Savikhin, S.1    Buck, D.R.2    Struve, W.S.3
  • 30
    • 37549039510 scopus 로고    scopus 로고
    • A short history of SHELX
    • 10.1107/S0108767307043930
    • GM Sheldrick 2008 A short history of SHELX Acta Crystallogr A 64 112 122 10.1107/S0108767307043930
    • (2008) Acta Crystallogr A , vol.64 , pp. 112-122
    • Sheldrick, G.M.1
  • 31
    • 34250158768 scopus 로고    scopus 로고
    • Polarized fluorescence of aggregated bacteriochlorophyll c and baseplate bacteriochlorophyll a in single chlorosomes isolated from Chloroflexus aurantiacus
    • 10.1021/bi0623072
    • Y Shibata Y Saga H Tamiaki S Itoh 2007 Polarized fluorescence of aggregated bacteriochlorophyll c and baseplate bacteriochlorophyll a in single chlorosomes isolated from Chloroflexus aurantiacus Biochemistry 46 7062 7068 10.1021/bi0623072
    • (2007) Biochemistry , vol.46 , pp. 7062-7068
    • Shibata, Y.1    Saga, Y.2    Tamiaki, H.3    Itoh, S.4
  • 33
    • 0002765239 scopus 로고
    • Refinement of the structure of a water-soluble antenna complex from green photosynthetic bacteria by incorporation of the chemically determined amino acid sequence
    • Academic Press, Inc. San Diego
    • Tronrud DE, Matthews BW (1993) Refinement of the structure of a water-soluble antenna complex from green photosynthetic bacteria by incorporation of the chemically determined amino acid sequence. In: Deisenhofer J, Norris JR (eds) The photosynthetic reaction center, vol 1. Academic Press, Inc., San Diego
    • (1993) The Photosynthetic Reaction Center , vol.1
    • Tronrud, D.E.1    Matthews, B.W.2    Deisenhofer, J.3    Norris, J.R.4
  • 34
    • 0023042001 scopus 로고
    • Structure and X-ray amino acid sequence of a bacteriochlorophyll a protein from Prosthecochloris aestuarii refined at 1.9 Å resolution
    • 10.1016/0022-2836(86)90167-1
    • DE Tronrud MF Schmid BW Matthews 1986 Structure and X-ray amino acid sequence of a bacteriochlorophyll a protein from Prosthecochloris aestuarii refined at 1.9 Å resolution J Mol Biol 188 443 454 10.1016/0022-2836(86) 90167-1
    • (1986) J Mol Biol , vol.188 , pp. 443-454
    • Tronrud, D.E.1    Schmid, M.F.2    Matthews, B.W.3
  • 35
    • 5544233220 scopus 로고
    • Singlet-triplet spectroscopy of the light-harvesting BChl a complex of Prosthecochloris aestuarii. the nature of the low-energy 825 nm transition
    • 10.1021/j100091a054
    • F van Mourik RR Verwijst JM Mulder R van Grondelle 1994 Singlet-triplet spectroscopy of the light-harvesting BChl a complex of Prosthecochloris aestuarii. The nature of the low-energy 825 nm transition J Phys Chem 98 40 10307 10312 10.1021/j100091a054
    • (1994) J Phys Chem , vol.98 , Issue.40 , pp. 10307-10312
    • Van Mourik, F.1    Verwijst, R.R.2    Mulder, J.M.3    Van Grondelle, R.4
  • 37
  • 38
    • 65549105448 scopus 로고    scopus 로고
    • Membrane orientation of the FMO antenna protein from Chlorobaculum tepidum as determined by mass spectrometry-based footprinting
    • 10.1073/pnas.0901691106
    • J Wen H Zhang ML Gross RE Blankenship 2009 Membrane orientation of the FMO antenna protein from Chlorobaculum tepidum as determined by mass spectrometry-based footprinting Proc Natl Acad Sci USA 106 15 6134 31639 10.1073/pnas.0901691106
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.15 , pp. 6134-31639
    • Wen, J.1    Zhang, H.2    Gross, M.L.3    Blankenship, R.E.4
  • 39
    • 0036228191 scopus 로고    scopus 로고
    • The quantitative relationship between structure and polarized spectroscopy in the FMO comples of Prosthecochloris aestuarii: Refining experiments and simulations
    • 10.1023/A:1014947732165
    • M Wendling MA Przyjalgowski D Gülen SIE Vulto TJ Aartsma R van Grondelle H van Amerongen 2002 The quantitative relationship between structure and polarized spectroscopy in the FMO comples of Prosthecochloris aestuarii: refining experiments and simulations Photosynth Res 71 99 123 10.1023/A:1014947732165
    • (2002) Photosynth Res , vol.71 , pp. 99-123
    • Wendling, M.1    Przyjalgowski, M.A.2    Gülen, D.3    Vulto, S.I.E.4    Aartsma, T.J.5    Van Grondelle, R.6    Van Amerongen, H.7
  • 40
    • 0019321205 scopus 로고
    • Seven-fold exciton splitting of the 810-nm band in bacteriochlorophyll a-proteins from green photosynthetic bacteria
    • 10.1016/0005-2728(80)90234-0
    • WB Whitten JM Olson RM Pearlstein 1980 Seven-fold exciton splitting of the 810-nm band in bacteriochlorophyll a-proteins from green photosynthetic bacteria Biochim Biophys Acta 591 203 207 10.1016/0005-2728(80)90234-0
    • (1980) Biochim Biophys Acta , vol.591 , pp. 203-207
    • Whitten, W.B.1    Olson, J.M.2    Pearlstein, R.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.