Phylogenetic analysis reveals two morphologically unique new species in the genera Astrochapsa and Nitidochapsa (lichenized Ascomycota: Graphidaceae)

Phytotaxa

Volumn 189, Issue 1, 2014, Pages 268-281

  Poengsungnoen, Vasun ^a,b   Manoch, Leka ^a   Mongkolsuk, Pachara ^b   Boonpragob, Kansri ^b   Parnmen, Sittiporn ^c   Lücking, Robert ^d   Tehler, Anders ^e   Lumbsch, H Thorsten ^d  

^a KASETSART UNIVERSITY   (Thailand)

^b RAMKHAMHAENG UNIVERSITY   (Thailand)

^c MINISTRY OF PUBLIC HEALTH   (Thailand)

^d FIELD MUSEUM OF NATURAL HISTORY   (United States)

^e SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

Author keywords

Lichens; Molecular systematics; New species; Ostropales; Taxonomy

Indexed keywords

ASCOMYCOTA; GRAPHIDACEAE; OCELLULARIA; OSTROPALES;

EID: 84919643019     PISSN: 11793155     EISSN: 11793163     Source Type: Journal    
DOI: 10.11646/phytotaxa.189.1.19     Document Type: Article

References (38)

1. Dumortier, B.C. (1822) Commentationes botanicae. Observationes botanique, dédiées a la Société d'horticulture de Tournay. Casterman-Dieu, Tournay p. 116. http://dx.doi.org/10.5962/bhl.title.10534
2. Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797. http://dx.doi.org/10.1093/nar/gkh340
3. Frisch, A., Kalb, K. & Grube, M. (2006) Contributions towards a new systematics of the lichen family Thelotremataceae. Bibliotheca Lichenologica 92: 1-539.
4. Hale, M.E. (1974) Morden-Smithsonian Expedition to Dominica: The lichens (Thelotremataceae). Smithsonian Contributions to Botany 16: 1-46. http://dx.doi.org/10.5479/si.0081024x.16
5. Hale, M.E. (1980) Generic delimitation in the lichen family Thelotremataceae. Mycotaxon 11: 130-138.
6. Homchantara, N. & Coppins, B.J. (2002) New species of the lichen family Thelotremataceae in SE Asia. Lichenologist 34: 113-140. http://dx.doi.org/10.1006/lich.2002.0382
7. Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755. http://dx.doi.org/10.1093/bioinformatics/17.8.754
8. Lücking, R., Papong, K., Thammathaworn, A. & Boonpragob, K. (2008) Historical biogeography and phenotype-phylogeny of Chroodiscus (lichenized Ascomycota: Ostropales: Graphidaceae). Journal of Biogeography 35: 2311-2327. http://dx.doi.org/10.1111/j.1365-2699.2008.01972.x
9. Lücking, R., Rivas Plata, E., Chaves, J.L., Umaña, L. & Sipman, H.J.M. (2009) How many tropical lichens are there . really? Bibliotheca Lichenologica 100: 399-418.
10. Lücking, R., Tehler, A., Bungartz, F., Rivas Plata, E. & Lumbsch, H.T. (2013) Journey from the West: Did tropical Graphidaceae (lichenized Ascomycota: Ostropales) evolve from a saxicolous ancestor along the American Pacific coast? American Journal of Botany 100: 844-856. http://dx.doi.org/10.3732/ajb.1200548
11. Lumbsch, H.T. (1989) Die holarktischen Vertreter der Flechtengattung Diploschistes (Thelotremataceae). Journal of the Hattori Botanical Laboratory 66: 133-196.
12. Lumbsch, H.T. (2002) Analysis of phenolic products in lichens for identification and taxonomy. In: Kranner, I., Beckett, R. & Varma, A. (eds.), Protocols in Lichenology. Culturing, biochemistry, ecophysiology and use in biomonitoring. Springer, Berlin, pp. 281-295.
13. Lumbsch, H.T. & Tehler, A. (1998) A cladistic analysis of the genus Diploschistes (Ascomycotina, Thelotremataceae). Bryologist 101: 398-403.
14. Lumbsch, H.T., Mangold, A., Martin, M.P. & Elix, J.A. (2008) Species recognition and phylogeny of Thelotrema species in Australia (Ostropales, Ascomycota). Australian Systematic Botany 21: 217-227. http://dx.doi.org/10.1071/sb07049
15. Lutzoni, F., Kauff, F., Cox, C., McLaughlin, D., Celio, G., Dentinger, B., et al. (2004) Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany 91: 1446-1480. http://dx.doi.org/10.3732/ajb.91.10.1446
16. Mangold, A., Martin, M.P., Lücking, R. & Lumbsch, H.T. (2008) Molecular phylogeny suggests synonymy of Thelotremataceae within Graphidaceae (Ascomycota: Ostropales). Taxon 57: 476-486.
17. Mangold, A., Elix, J.A. & Lumbsch, H.T. (2009) Thelotremataceae. Flora of Australia 57: 195-420.
18. Martin, M.P., LaGreca, S. & Lumbsch, H.T. (2003) Molecular phylogeny of Diploschistes inferred from ITS sequence data. Lichenologist 35: 27-32. http://dx.doi.org/10.1006/lich.2002.0427
19. Massalongo, A.B. (1860) Esame comparativo di alcuni generi dei Licheni. Atti del Reale Istituto Veneto di Scienze, Lettere ed Arti, Series 3(5): 247-276, 313-337.
20. Müller, J. (1890) Lichenes Epiphylli Novi. H. Georg, Basel.
21. Nylander, J.A.A., Wilgenbusch, J.C., Warren, D.L. & Swofford, D.L. (2007) AWTY (Are We There Yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24: 581-583. http://dx.doi.org/10.1093/bioinformatics/btm388
22. Page, R.D.M. (1996) Treeview: an application to display phylogenetic trees on personal computers. Computer Applied Biosciences 12: 357-358.
23. Papong, K., Corush, J., Mangold, A., Lücking, R. & Lumbsch, H.T. (2009) Phylogenetic position of the foliicolous genus Chroodiscus (Ostropales, Ascomycota) inferred from nuclear and mitochondrial ribosomal DNA sequences. Fungal Diversity 38: 147-153.
24. Papong, K., Boonpragob, K., Mangold, A., Divakar, P.K. & Lumbsch, H.T. (2010) Thelotremoid lichen species recently described from Thailand: a re-evaluation. Lichenologist 42: 131-137. http://dx.doi.org/10.1017/s0024282909990405
25. Parnmen, S., Lücking, R. & Lumbsch, H.T. (2012) Phylogenetic classification at generic level in the absence of distinct phylogenetic patterns of phenotypical variation: a case study in Graphidaceae (ascomycota). Plos One 7(12): e51392. http://dx.doi.org/10.1371/journal.pone.0051392
26. Parnmen, S., Cáceres, M.E.S., Lücking, R. & Lumbsch, H.T. (2013) Myriochapsa and Nitidochapsa, two new genera in Graphidaceae (Ascomycota: Ostropales) for chroodiscoid species in the Ocellularia clade. Bryologist 116: 127-133. http://dx.doi.org/10.1639/0007-2745-116.2.127
27. Posada, D. (2008) jModelTest: Phylogenetic model averaging. Molecular Biology and Evolution 25: 1253-1256. http://dx.doi.org/10.1093/molbev/msn083
28. Rivas Plata, E., Lücking, R. & Lumbsch, H.T. (2008) When family matters: an analysis of Thelotremataceae (lichenized Ascomycota: Ostropales) as bioindicators of ecological continuity in tropical forests. Biodiversity and Conservation 17: 1319-1351. http://dx.doi.org/10.1007/s10531-007-9289-9
29. Rivas Plata, E. & Lumbsch, H.T. (2011) Parallel evolution and phenotypic divergence in lichenized fungi: a case study in the lichen- forming fungal family Graphidaceae (Ascomycota: Lecanoromycetes: Ostropales). Molecular Phylogenetics and Evolution 61: 45-63. http://dx.doi.org/10.1016/j.ympev.2011.04.025
30. Rivas Plata, E., Lücking, R., Sipman, H.J.M., Mangold, A. & Lumbsch, H.T. (2010) A world-wide key to the thelotremoid Graphidaceae, excluding the Ocellularia-Myriotrema-Stegobolus clade. Lichenologist 42: 139-185. http://dx.doi.org/10.1017/s0024282909990491
31. Rivas Plata, E., Lücking, R. & Lumbsch, H.T. (2012a) A new classification for the family Graphidaceae (Ascomycota: Lecanoromycetes: Ostropales). Fungal Diversity 52: 107-121. http://dx.doi.org/10.1007/s13225-011-0135-8
32. Rivas Plata, E., Lücking, R. & Lumbsch, H.T. (2012b) Molecular phylogeny and systematics of the Ocellularia clade (Ascomycota: Ostropales: Graphidaceae). Taxon 61: 1161-1179.
33. Rivas Plata E., Parnmen, S., Staiger, B., Mangold, A., Frisch, A., Weerakoon, G., Hernández M.J.E., Cáceres, M.E.S., Kalb, K., Sipman, H.J.M., Common, R.S., Nelsen, M.P., Lücking, R. & Lumbsch, H.T. (2013) A molecular phylogeny of Graphidaceae (Ascomycota, Lecanoromycetes, Ostropales) including 428 species. MycoKeys 6: 55-94. http://dx.doi.org/10.3897/mycokeys.6.3482
34. Sipman, H.J.M., Lücking, R., Aptroot, A., Luis Chaves, J., Kalb, K. & Umana Tenorio, L. (2012) A first assessment of the Ticolichen biodiversity inventory in Costa Rica and adjacent areas: the thelotremoid Graphidaceae (Ascomycota: Ostropales). Phytotaxa 55: 1-214.
35. Staiger, B. (2002) Die Flechtenfamilie Graphidaceae. Studien in Richtung einer natürlicheren Gliederung. Bibliotheca Lichenologica85: 1-526.
36. Staiger, B., Kalb, K. & Grube, M. (2006) Phylogeny and phenotypic variation in the lichen family Graphidaceae (Ostropomycetidae, Ascomycota). Mycological Research 110: 765-772. http://dx.doi.org/10.1016/j.mycres.2006.05.003
37. Stamatakis, A. (2006) RAxML-VI-HPC: Maximum Likelihood-based Phylogenetic Analyses with Thousands of Taxa and Mixed Models. Bioinformatics 22: 2688-2690. http://dx.doi.org/10.1093/bioinformatics/btl446
38. Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A Rapid Bootstrap Algorithm for the RAxML Web Servers. Systematic Biology 57: 758-771. http://dx.doi.org/10.1080/10635150802429642