Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration

PLoS Computational Biology

Volumn 10, Issue 12, 2014, Pages

  Gavryushkina, Alexandra ^a,b   Welch, David ^a   Stadler, Tanja ^c   Drummond, Alexei J ^a,b  

^a UNIVERSITY OF AUCKLAND   (New Zealand)

^b MASSEY UNIVERSITY   (New Zealand)

^c ETH ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

FORESTRY; INFERENCE ENGINES; MARKOV PROCESSES; TREES (MATHEMATICS);

BAYESIAN INFERENCE; BAYESIAN MARKOV CHAIN MONTE CARLO; BRANCHING PROCESS; DIVERGENCE TIME; INFERENCE TOOLS; MARKOV CHAIN MONTE CARLO ALGORITHMS; PARAMETERS ESTIMATES; PHYLOGENETIC ANALYSIS; PHYLOGENETIC INFERENCE; TIME POINTS;

BAYESIAN NETWORKS;

ARTICLE; BAYES THEOREM; CALCULATION; EPIDEMIOLOGICAL DATA; FOSSIL; GENEALOGY; MATHEMATICAL ANALYSIS; MOLECULAR PHYLOGENY; MONTE CARLO METHOD; NONHUMAN; PHYLOGENETIC TREE; PLESIOMORPHY; PROBABILITY; RECEIVER OPERATING CHARACTERISTIC; SIMULATION; TREE; ALGORITHM; BIOLOGICAL MODEL; BIOLOGY; CLASSIFICATION; GENETICS; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; MOLECULAR EVOLUTION; PHYLOGENY; PROCEDURES; SOFTWARE; VIROLOGY;

ALGORITHMS; BAYES THEOREM; COMPUTATIONAL BIOLOGY; EVOLUTION, MOLECULAR; FOSSILS; HIV INFECTIONS; HIV-1; HUMANS; MODELS, GENETIC; PHYLOGENY; SOFTWARE;

EID: 84919628839     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1003919     Document Type: Article

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