Combining fossil and molecular data to date the diversification of New World Primates

Journal of Evolutionary Biology

Volumn 26, Issue 11, 2013, Pages 2438-2446

  Schrago, C G ^a   Mello, B ^a   Soares, A E R ^a  

^a FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

Author keywords

Bayesian relaxed clock; Miocene; Morphology; Platyrrhini; South America; Timescale

Indexed keywords

ADAPTIVE RADIATION; BAYESIAN ANALYSIS; BIOGEOGRAPHY; CALIBRATION; DIVERGENCE; FOSSIL RECORD; MIOCENE; MOLECULAR ANALYSIS; MORPHOLOGY; OLIGOCENE; PRIMATE; TIMESCALE;

PATAGONIA;

PLATYRRHINI; PRIMATES; SIMIAE; SIMIIFORMES;

ANIMAL; ARTICLE; BAYES THEOREM; BAYESIAN RELAXED CLOCK; BIODIVERSITY; CLASSIFICATION; FOSSIL; GENETICS; HISTOLOGY; MIOCENE; MORPHOLOGY; PHYLOGENY; PLATYRRHINI; PRIMATE; SOUTH AMERICA; TIME; TIMESCALE;

BAYESIAN RELAXED CLOCK; MIOCENE; MORPHOLOGY; PLATYRRHINI; SOUTH AMERICA; TIMESCALE;

ANIMALS; BAYES THEOREM; BIODIVERSITY; FOSSILS; PHYLOGENY; PRIMATES; TIME FACTORS;

EID: 84885855579     PISSN: 1010061X     EISSN: 14209101     Source Type: Journal    
DOI: 10.1111/jeb.12237     Document Type: Article

References (43)

1. Dos Reis, M., Inoue, J., Hasegawa, M., Asher, R.J., Donoghue, P.C. & Yang, Z. 2012. Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny. Proc. Biolo. Sci. 279: 3491-3500.
2. Drummond, A.J., Pybus, O.G., Rambaut, A., Forsberg, R. & Rodrigo, A.G. 2003. Measurably evolving populations. Trends Ecol. Evol. 18: 481-488.
3. Drummond, A.J., Suchard, M.A., Xie, D. & Rambaut, A. 2012. Bayesian Phylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 29: 1969-1973.
4. Fleagle, J.G. 1990. New Fossil Platyrrhines from the Pinturas Formation, Southern Argentina. J. Hum. Evol. 19: 61-85.
5. Fleagle, J.G. 1998. Primate Adaptation and Evolution, 2nd edn. Academic Press, New York.
6. Fleagle, J.G. 2013. Primate Adaptation and Evolution, 3rd edn. Academic Press, New York.
7. Gingerich, P.D. 1990. Primate Evolution - African dawn for primates. Nature 346: 411.
8. Gingerich, P.D., Dashzeveg, D. & Russell, D.E. 1991. Dentition and systematic relationships of Altanius-Orlovi (Mammalia, Primates) from the early eocene of Mongolia. Geobios 24: 637-646.
9. Hartwig, W.C. 2002. The Primate Fossil Record, 1st edn. Cambridge University Press, Cambridge.
10. Hodgson, J.A., Sterner, K.N., Matthews, L.J., Burrell, A.S., Jani, R.A., Raaum, R.L. et al. 2009. Successive radiations, not stasis, in the South American primate fauna. Proc. Natl. Acad. Sci. USA 106: 5534-5539.
11. Kay, R.F. & Fleagle, J.G. 2010. Stem taxa, homoplasy, long lineages, and the phylogenetic position of Dolichocebus. J. Hum. Evol. 59: 218-222.
12. Kay, R.F., Fleagle, J.G., Mitchell, T.R., Colbert, M., Bown, T. & Powers, D.W. 2008. The anatomy of Dolichocebus gaimanensis, a stem platyrrhine monkey from Argentina. J. Hum. Evol. 54: 323-382.
13. Koepfli, K.P., Deere, K.A., Slater, G.J., Begg, C., Begg, K., Grassman, L. et al. 2008. Multigene phylogeny of the Mustelidae: resolving relationships, tempo and biogeographic history of a mammalian adaptive radiation. BMC Biol. 6: 10.
14. Laurin, M. 2012. Recent progress in paleontological methods for dating the Tree of Life. Front genet 3: 130.
15. Lewis, P.O. 2001. A likelihood approach to estimating phylogeny from discrete morphological character data. Syst. Biol. 50: 913-925.
16. Loss-Oliveira, L., Aguiar, B.O. & Schrago, C.G. 2012. Testing Synchrony in Historical Biogeography: the Case of New World Primates and Hystricognathi Rodents. Evol. Bioinform. 8: 127-137.
17. Marjanovic, D. & Laurin, M. 2007. Fossils, molecules, divergence times, and the origin of lissamphibians. Syst. Biol. 56: 369-388.
18. Opazo, J.C., Wildman, D.E., Prychitko, T., Johnson, R.M. & Goodman, M. 2006. Phylogenetic relationships and divergence times among New World monkeys (Platyrrhini, Primates). Mol. Phylogenet. Evol. 40: 274-280.
19. Perelman, P., Johnson, W.E., Roos, C., Seuanez, H.N., Horvath, J.E., Moreira, M.A. et al. 2011. A molecular phylogeny of living primates. PLoS Genet. 7: e1001342.
20. Perini, F.A., Russo, C.A. & Schrago, C.G. 2010. The evolution of South American endemic canids: a history of rapid diversification and morphological parallelism. J. Evol. Biol. 23: 311-322.
21. Polly, P.D. 2001. On morphological clocks and paleophylogeography: towards a timescale for Sorex hybrid zones. Genetica 112: 339-357.
22. Pond, S.L.K., Frost, S.D.W. & Muse, S.V. 2005. HyPhy: hypothesis testing using phylogenies. Bioinformatics 21: 676-679.
23. Poux, C., Chevret, P., Huchon, D., de Jong, W.W. & Douzery, E.J. 2006. Arrival and diversification of caviomorph rodents and platyrrhine primates in South America. Syst. Biol. 55: 228-244.
24. Pyron, R.A. 2011. Divergence time estimation using fossils as terminal taxa and the origins of lissamphibia. Syst. Biol. 60: 466-481.
25. Rannala, B. & Yang, Z.H. 2007. Inferring speciation times under an episodic molecular clock. Syst. Biol. 56: 453-466.
26. Ronquist, F., Klopfstein, S., Vilhelmsen, L., Schulmeister, S., Murray, D.L. & Rasnitsyn, A.P. 2012a. A total-evidence approach to dating with fossils, applied to the early radiation of the hymenoptera. Syst. Biol. 61: 973-999.
27. Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Hohna, S. et al. 2012b. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 61: 539-542.
28. Rosenberger, A.L. 1979. Cranial anatomy and implications of Dolichocebus, a late Oligocene ceboid primate. Nature 279: 416-418.
29. Rosenberger, A.L. 1980. Gradistic views and adaptive radiation of platyrrhine primates. Z. Morphol. Anthropol. 71: 157-163.
30. Rosenberger, A.L. 2010. Platyrrhines, PAUP, parallelism, and the long lineage hypothesis: a reply to. J. Hum. Evol. 59: 214-217; discussion 218-222.
31. Schneider, H. 2000. The current status of the New World monkey phylogeny. An. Acad. Bras. Cienc 72: 165-172.
32. Schneider, H., Schneider, M.P., Sampaio, I., Harada, M.L., Stanhope, M., Czelusniak, J. et al. 1993. Molecular phylogeny of the New World monkeys (Platyrrhini, primates). Mol. Phylogenet. Evol. 2: 225-242.
33. Schrago, C.G. 2007. On the time scale of new world primate diversification. Am. J. Phys. Anthropol. 132: 344-354.
34. Schrago, C.G. & Russo, C.A. 2003. Timing the origin of New World monkeys. Mol. Biol. Evol. 20: 1620-1625.
35. Schrago, C.G., Menezes, A.N., Moreira, M.A., Pissinatti, A. & Seuanez, H.N. 2012. Chronology of deep nodes in the neotropical primate phylogeny: insights from mitochondrial genomes. PLoS ONE 7: e51699.
36. Shapiro, B., Drummond, A.J., Rambaut, A., Wilson, M.C., Matheus, P.E., Sher, A.V. et al. 2004. Rise and fall of the Beringian steppe bison. Science 306: 1561-1565.
37. Stadler, T. 2010. Sampling-through-time in birth-death trees. J. Theor. Biol. 267: 396-404.
38. Steiper, M.E. & Young, N.M. 2006. Primate molecular divergence dates. Mol. Phylogenet. Evol. 41: 384-394.
39. Takai, M. & Anaya, F. 1996. New specimens of the oldest fossil platyrrhine, Branisella boliviana, from Salla, Bolivia. Am. J. Phys. Anthropol. 99: 301-317.
40. Takai, M., Anaya, F., Shigehara, N. & Setoguchi, T. 2000. New fossil materials of the earliest new world monkey, Branisella boliviana, and the problem of platyrrhine origins. Am. J. Phys. Anthropol. 111: 263-281.
41. Tejedor, M.F., Tauber, A.A., Rosenberger, A.L., Swisher, C.C. 3rd & Palacios, M.E. 2006. New primate genus from the Miocene of Argentina. Proc. Natl. Acad. Sci. USA 103: 5437-5441.
42. Wiens, J.J. 2001. Character analysis in morphological phylogenetics: problems and solutions. Syst. Biol. 50: 689-699.
43. Yang, Z.H. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24: 1586-1591.