Allelic sequence divergence in the apomictic Boechera holboellii complex

Lost Sex: The Evolutionary Biology of Parthenogenesis

Volumn 9789048127702, Issue , 2009, Pages 495-516

  Corral, Jose M ^a   Piwczynski, Marcin ^b   Sharbel, Tim F ^a  

^a LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

^b NICOLAUS COPERNICUS UNIVERSITY   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84919621077     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-90-481-2770-2_23     Document Type: Chapter

References (68)

1. Asker S, Jerling L (1992) Apomixis in plants. CRC press, Boca Raton
2. Birky W Jr. C (1996) Heterozygosity, heteromorphy, and phylogenetic trees in asexual eukaryotes. Genetics 144:427-437
3. Böcher TW (1951) Cytological and embryological studies in the amphi-apomictic Arabis holboellii complex. Kong Dansk. Vidensk Selsk Biol Skr 6:1-59
4. Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR et al. (2007) Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proc Natl Acad Sci USA 104:12057-12062
5. Bruford MW, Wayne RK (1993) Microsatellites and their application to population genetic studies. Curr Opin Genet Dev 3:939-943
6. Burt A, Carter DA, Koenig GL, White TJ, Taylor JW (1996) Molecular markers reveal cryptic sex in the human pathogen Coccidioides immitis. Proc Natl Acad Sci USA 93:770-773
7. Butlin RK (2000) Virgin rotifers. Trends Ecol Evol 15:389-390
8. Clauss MJ, Cobban H, Mitchell-Olds T (2002) Cross-species microsatellite markers for elucidating population genetic structure in Arabidopsis and Arabis (Brassicaeae). Mol Ecol 11:591-601
9. Delmotte F, Sabater-Munoz B, Prunier-Leterme N, Latorre A, Sunnucks P, Rispe C, Simon J-C (2003) Phylogenetic evidence for hybrid origins of asexual lineages in an aphid species. Evolution 57:1291-1303
10. Dobeš C, Mitchell-Olds T, Koch MA (2004a) Extensive chloroplast haplotype variation indicates Pleistocene hybridization and radiation of North American Arabis drummondii, A.× divaricarpa, and A. holboellii (Brassicaceae). Mol Ecol 13:349-370
11. Dobeš C, Mitchell-Olds T, Koch MA (2004b) Intraspecific diversification in North American Boechera stricta (= Arabis drummondii), Boechera x divaricarpa, and Boechera holboellii (Brassicaceae) inferred from nuclear and chloroplast molecular markers - an integrative approach. Am J Bot 91:2087-2101
12. Dobeš C, Sharbel TF, Koch M (2007) Towards understanding the dynamics of hybridization and apomixis in the evolution of the genus Boechera (Brassicaceae). System Biodivers 5:321-331
13. Estoup A, Jarne P, Cornuet JM (2002) Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis. Mol Ecol 11:1591-1604
14. Forche A, Magee PT, Magee BB, May G (2004) Genome-wide single-nucleotide polymorphism map for Candida albicans. Eukaryot Cell 3:705-714
15. Grimaldi M-C, Crouau-Roy B (1997) Microsatellite allelic homoplasy due to variable flanking sequences. J Mol Evol 44:336-340
16. Halkett F, Simon JC, Balloux F (2005a) Tackling the population genetics of clonal and partially clonal organisms. Trends Ecol Evol 20:194-201
17. Halkett F, Plantegenest M, Prunier-Leterme N, Mieuzet L, Delmotte F, Simon JC (2005b) Admixed sexual and facultatively asexual aphid lineages at mating sites. Mol Ecol 14:325-336
18. Hall TA (1999) BioEdit: a user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95-98
19. Hegarty MJ, Hiscock SJ (2005) Hybrid speciation in plants: new insights from molecular studies. New Phytol 165:411-423
20. Huang QY, Xu FH, Shen H, Deng HY, Liu YJ et al. (2002) Mutation patterns at dinucleotide microsatellite loci in humans. Am J Hum Genet 70:625-634
21. Johnson SG (2006) Geographic ranges, population structure, and ages of sexual and parthenogenetic snail lineages. Evolution 60:1417-1426
22. Judson PO, Normark BB (1996) Ancient asexual scandals. Trends Ecol Evol 11:41-46
23. Kantama L, Sharbel TF, Schranz EM, Mitchell-Olds T, De Vries S, de Jong H (2007) Diploid apomicts of the Boechera holboelli complex display large scale chromosome substitutions and aberrant chromosomes. Proc Natl Acad Sci of USA 104:14026-14031
24. Kashin AS, Anfalov VE, Demochko Iu A (2005) Allozyme variation in sexual and apomictic Taraxacum and Pilosella (Asteraceae) populations. Genetika 41:203-215
25. Kimura M, Maruyama T, Crow JF (1963) The mutation load in small populations. Genetics 48:1303-1312
26. Koch MA, Dobeš C, Mitchell-Olds T (2003) Multiple hybrid formation in natural populations: concerted evolution of the Internal Transcribed Spacer of nuclear ribosomal DNA (ITS) in North American Arabis divaricarpa (Brassicaceae). Mol Biol Evol 20:338-350
27. Levinson G, Gutman GA (1987) Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4:203-221
28. Liu QL, Thomas VP, Williamson VM (2007) Meiotic parthenogenesis in a root-knot nematode results in rapid genomic homozygosity. Genetics 176:1483-1490
29. Lunt DH (2008) Genetic tests of ancient asexuality in root knot nematodes reveal recent hybrid origins. BMC Evol Biol 8:194
30. Luty JA, Guo Z, Willard HF, Ledbetter DH, Ledbetter S, Litt M (1990) Five polymorphic microsatellite VNTRs on the human X chromosome. Am J Hum Genet 46:776-783
31. Lynch M, Burger R, Butcher D, Gabriel W (1993) The mutational meltdown in asexual populations. J Hered 84:339-344
32. Mark Welch D, Meselson M (2000) Evidence for the evolution of bdelloid rotifers without sexual reproduction or genetic exchange. Science 288:1211-1215
33. Mark Welch DB, Mark Welch JL, Meselson M (2008) Evidence for degenerate tetraploidy in bdelloid rotifers. Proc Natl Acad Sci USA 105:5145-5149
34. Martens K, Rossetti G, Horne DJ (2003) How ancient are ancient asexuals? Proc R Soc Lond B 270:723-729
35. Matzk F, Meister A, Schubert I (2000) An efficient screen for reproductive pathways using mature seeds of monocots and dicots. Plant J 21:97-108
36. Maynard Smith J (1978) The evolution of sex. Cambridge University Press, Cambridge, UK
37. Mogg R, Batley J, Hanley S, Edwards D, O'Sullivan H, Edwards KJ (2002) Characterization of the flanking regions of Zea mays microsatellites reveals a large number of useful sequence polymorphisms. Theor Appl Genet 105:532-543
38. Muller HJ (1964) The relation of recombination to mutational advance. Mutat Res 106:2-9
39. Naumova TN, van der Laak J, Osadtchiy J, Matzk F, Kravtchenko A, Bergervoet J, Kamisetti SR, Boutilier K (2001) Reproductive development in apomictic populations of Arabis holboellii (Brassicaceae). Sex Plant Reprod 14:195-200
40. Norton RA, Palmer SC (1991) The distribution, mechanisms and evolutionary significance of parthenogenesis in oribatid mites; In: Schuster R, Murphy PW (eds) The Acari: reproduction, development and life-history strategies. Chapman and Hall, London, pp. 107-136
41. Omilian AR, Cristescu ME, Dudycha JL, Lynch M (2006) Ameiotic recombination in asexual lineages of Daphnia. Proc Natl Acad Sci USA 103:18638-18643
42. Paun O, Hörandl E (2006) Evolution of hypervariable microsatellites in apomictic polyploid lineages of Ranunculus carpaticola: directional bias at dinucleotide loci. Genetics 174:387-398
43. Pouchkina-Stantcheva NN, McGee BM, Boschetti C, Tolleter D, Chakrabortee S, Popova AV, Meersman F, Macherel D, Hincha DK, Tunnacliffe A (2007) Functional divergence of former alleles in an ancient asexual invertebrate. Science 318:268-271
44. Roy BA (1995) The breeding systems of six species of Arabis (Brassicaceae). Am J Bot 82:869-877
45. Roy BA, Rieseberg LH (1989) Evidence for apomixis in Arabis. J Hered 80:506-508
46. Roy MS, Geffen E, Smith D, Ostrander EA, Wayne RK (1994) Patterns of differentiation and hybridization in North American wolflike canids, revealed by analysis of microsatellite loci. Mol Biol Evol 11:553-570
47. Rozas J, Sanchez-Del Barrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2496-2497
48. Schaefer I, Domes K, Heethoff M, Schneider K, Schön I, Norton RA, Scheu S, Maraun M (2006) No evidence for the "Meselson effect" in parthenogenetic oribatid mites (Oribatida, Acari). J Evol Biol 19:184-193
49. Schlötterer C (2000) Evolutionary dynamics of microsatellite DNA. Chromosoma 109:365-371
50. Schön I, Martens K (1998) DNA repair in an ancient asexual: a new solution for an old problem? J Nat Hist 32:943-948
51. Schön I, Martens K (2003) No slave to sex. Proc R Soc London B 270:827-833
52. Schranz ME, Dobeš C, Koch MA, Mitchell-Olds T (2005) Sexual reproduction, hybridization, apomixis, and polyploidization in the genus Boechera (Brassicaceae). Am J Bot 92:1797-1810
53. Schranz ME, Windsor AJ, Song BH, Lawton-Rauh A, Mitchell-Olds T (2007) Comparative genetic mapping in Boechera stricta, a close relative of Arabidopsis. Plant Physiol 144:286-298
54. Shaked H, Kashkush K, Ozkan H, Feldman M, Levy AA (2001) Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 13:1749-1759
55. Sharbel TF, Mitchell-Olds T (2001) Recurrent polyploid origins and chloroplast phylogeography in the Arabis holboellii complex (Brassicaceae). Heredity 87:59-68
56. Sharbel TF, Voigt ML, Mitchell-Olds T, Kantama L, de Jong H (2004) Is the aneuploid chromosome in an apomictic Boechera holboellii a genuine B chromosome? Cytogenet Genome Res 106:173-183
57. Sharbel TF, Mitchell-Olds T, Dobes C, Kantama L, de Jong H (2005) Biogeographic distribution of polyploidy and B chromosomes in the apomictic Boechera holboellii complex. Cytogenet Genome Res 109:283-292
58. Sharbel TF, Voigt M-L, Corral JM, Thiel T, Varshney A, Kumlehn J, Vogel H, Rotter B (2009) Molecular signatures of apomictic and sexual ovules in the Boechera holboellii complex. Plant J 58:870-882
59. Song B-H, Clauss MJ, Pepper A, Mitchell-Olds T (2006) Geographic patterns of microsatellite variation in Boechera stricta, a close relative of Arabidopsis. Mol Ecol 15:357-369
60. Sunnucks P, England PR, Taylor AC, Hales DF (1996) Microsatellite and chromosome evolution of parthenogenetic Sitobion aphids in Australia. Genetics 144:747-756
61. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599
62. Voigt ML, Melzer M, Rutten T, Mitchell-Olds T, Sharbel TF (2007) Gametogenesis in the apomictic Boechera holboellii complex: the male perspective. In: Hörandl E, Grossniklaus U, Van Dijk P, Sharbel TF (eds) Apomixis: evolution, mechanisms and perspectives. ARG Gantner Verlag KG, Lichtenstein, pp. 235-258
63. Vowles EJ, Amos W (2004) Evidence for widespread convergent evolution around human microsatellites. PLoS Biol 2:e199
64. Webster MT, Hagberg J (2007) Is there evidence for convergent evolution around human microsatellites? Mol Biol Evol 24:1097-1100
65. Weetman D, Hauser L, Carvalho GR (2002) Reconstruction of microsatellite mutation history reveals a strong and consistent deletion bias in invasive clonal snails, Potamopyrgus antipodarum. Genetics 162:813-822
66. Windham MD, Al-Shehbaz IA (2006) New and noteworthy species of Boechera (Brassicaceae) I: sexual diploids. Harv Pap Bot 11:61-88
67. Windham MD, Al-Shehbaz IA (2007) New and noteworthy species of Boechera (Brassicaceae) II: apomictic hybrids. Harv Pap Bot 11:257-274
68. Xia X, Xie Z (2001) DAMBE: software package for data analysis in molecular biology and evolution. J Hered 92:371-373