메뉴 건너뛰기




Volumn 9, Issue 12, 2014, Pages

Group-specific multiplex PCR detection systems for the identification of flying insect prey

Author keywords

[No Author keywords available]

Indexed keywords

DNA 18S; PRIMER DNA;

EID: 84919465617     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0115501     Document Type: Article
Times cited : (25)

References (49)
  • 1
    • 84886564100 scopus 로고    scopus 로고
    • The molecular revolution: Using plolymerase chain ractionbased methods to explore the role of predators in terrestrial food webs
    • Gurr GM, Wratten SD, Snyder WE, Read DMY, editors. Wiley & Sons
    • Symondson WOC (2012) The molecular revolution: using plolymerase chain ractionbased methods to explore the role of predators in terrestrial food webs. In: Gurr GM, Wratten SD, Snyder WE, Read DMY, editors. Biodiversity and Insect pests: Key issues for sustainable management: Wiley & Sons. pp.166-184.
    • (2012) Biodiversity and Insect Pests: Key Issues for Sustainable Management , pp. 166-184
    • Symondson, W.O.C.1
  • 2
    • 84888159563 scopus 로고    scopus 로고
    • Empirically characterising trophic networks: What emerging DNA-based methods, stable isotope and fatty acid analyses can offer
    • Traugott M, Kamenova S, Ruess L, Seeber J, Plantegenest M (2013) Empirically characterising trophic networks: what emerging DNA-based methods, stable isotope and fatty acid analyses can offer. Adv Ecol Res 49: 177-224.
    • (2013) Adv Ecol Res , vol.49 , pp. 177-224
    • Traugott, M.1    Kamenova, S.2    Ruess, L.3    Seeber, J.4    Plantegenest, M.5
  • 3
    • 0344237218 scopus 로고    scopus 로고
    • Collembola as alternative prey sustaining spiders in arable ecosystems: Prey detection within predators using molecular markers
    • Agustí N, Shayler SP, Harwood JD, Vaughan IP, Sunderland KD, et al. (2003) Collembola as alternative prey sustaining spiders in arable ecosystems: prey detection within predators using molecular markers. Mol Ecol 12: 3467-3475.
    • (2003) Mol Ecol , vol.12 , pp. 3467-3475
    • Agustí, N.1    Shayler, S.P.2    Harwood, J.D.3    Vaughan, I.P.4    Sunderland, K.D.5
  • 4
    • 23044487385 scopus 로고    scopus 로고
    • A DNA marker to identify predation of Plutella xylostella (Lep., Plutellidae) by Nabis kinbergii (Hem., Nabidae) and Lycosa sp. (Aranaea, Lycosidae)
    • Ma J, Li D, Keller M, Schmidt O, Feng X (2005) A DNA marker to identify predation of Plutella xylostella (Lep., Plutellidae) by Nabis kinbergii (Hem., Nabidae) and Lycosa sp. (Aranaea, Lycosidae). The Journal of Applied Entomology 129: 330-335.
    • (2005) The Journal of Applied Entomology , vol.129 , pp. 330-335
    • Ma, J.1    Li, D.2    Keller, M.3    Schmidt, O.4    Feng, X.5
  • 5
    • 33947496369 scopus 로고    scopus 로고
    • Revealing species-specific trophic links in soil food webs: Molecular identification of scarab predators
    • Juen A, Traugott M (2007) Revealing species-specific trophic links in soil food webs: molecular identification of scarab predators. Mol Ecol 16: 1545-1557.
    • (2007) Mol Ecol , vol.16 , pp. 1545-1557
    • Juen, A.1    Traugott, M.2
  • 6
    • 84858119238 scopus 로고    scopus 로고
    • Generalist predators disrupt parasitoid aphid control by direct and coincidental intraguild predation
    • Traugott M, Bell JR, Raso L, Sint D, Symondson WOC (2012) Generalist predators disrupt parasitoid aphid control by direct and coincidental intraguild predation. Bull Entomol Res 102: 239-247.
    • (2012) Bull Entomol Res , vol.102 , pp. 239-247
    • Traugott, M.1    Bell, J.R.2    Raso, L.3    Sint, D.4    Symondson, W.O.C.5
  • 7
    • 84860716078 scopus 로고    scopus 로고
    • Feeding habits of lycosid spiders in field habitats
    • Kuusk A-K, Ekbom B (2012) Feeding habits of lycosid spiders in field habitats. J Pest Sci 85: 253-260.
    • (2012) J Pest Sci , vol.85 , pp. 253-260
    • Kuusk, A.-K.1    Ekbom, B.2
  • 9
    • 84857641158 scopus 로고    scopus 로고
    • Analysing the diets of invertebrate predators using terminal restriction fragments
    • Juen A, Hogendoorn K, Ma G, Schmidt O, Keller MA (2012) Analysing the diets of invertebrate predators using terminal restriction fragments. J Pest Sci 85: 89-100.
    • (2012) J Pest Sci , vol.85 , pp. 89-100
    • Juen, A.1    Hogendoorn, K.2    Ma, G.3    Schmidt, O.4    Keller, M.A.5
  • 11
    • 58949104467 scopus 로고    scopus 로고
    • New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: The trnL approach
    • Valentini A, Miquel C, Nawaz MA, Bellemain E, Coissac E, et al. (2009) New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach. Mol Ecol Resour 9: 51-60.
    • (2009) Mol Ecol Resour , vol.9 , pp. 51-60
    • Valentini, A.1    Miquel, C.2    Nawaz, M.A.3    Bellemain, E.4    Coissac, E.5
  • 12
    • 79952748051 scopus 로고    scopus 로고
    • New insights on diet variability revealed by DNA barcoding and high-throughput pyrosequencing: Chamois diet in autumn as a case study
    • Raye G, Miquel C, Coissac E, Redjadj C, Loison A, et al. (2011) New insights on diet variability revealed by DNA barcoding and high-throughput pyrosequencing: chamois diet in autumn as a case study. Ecol Res 26: 265-276.
    • (2011) Ecol Res , vol.26 , pp. 265-276
    • Raye, G.1    Miquel, C.2    Coissac, E.3    Redjadj, C.4    Loison, A.5
  • 13
    • 79959397022 scopus 로고    scopus 로고
    • Molecular diet analysis of two african free-tailed bats (molossidae) using high throughput sequencing
    • Bohmann K, Monadjem A, Lehmkuhl Noer C, Rasmussen M, Zeale MR, et al. (2011) Molecular diet analysis of two african free-tailed bats (molossidae) using high throughput sequencing. PLoS ONE 6: e21441.
    • (2011) PLoS ONE , vol.6 , pp. e21441
    • Bohmann, K.1    Monadjem, A.2    Lehmkuhl Noer, C.3    Rasmussen, M.4    Zeale, M.R.5
  • 14
    • 77956879874 scopus 로고    scopus 로고
    • Pyrosequencing faecal DNA to determine diet of little penguins: Is what goes in what comes out?
    • Deagle BE, Chiaradia A, McInnes J, Jarman SN (2010) Pyrosequencing faecal DNA to determine diet of little penguins: is what goes in what comes out? Conserv Genet 11: 2039-2048.
    • (2010) Conserv Genet , vol.11 , pp. 2039-2048
    • Deagle, B.E.1    Chiaradia, A.2    McInnes, J.3    Jarman, S.N.4
  • 15
    • 65449140394 scopus 로고    scopus 로고
    • Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces
    • Deagle BE, Kirkwood R, Jarman SN (2009) Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces. Mol Ecol 18: 2022-2038.
    • (2009) Mol Ecol , vol.18 , pp. 2022-2038
    • Deagle, B.E.1    Kirkwood, R.2    Jarman, S.N.3
  • 16
    • 84890230480 scopus 로고    scopus 로고
    • A pragmatic approach to the analysis of diets of generalist predators: The use of next-generation sequencing with no blocking probes
    • Piñol J, San Andrés V, Clare EL, Mir G, Symondson WOC (2014) A pragmatic approach to the analysis of diets of generalist predators: the use of next-generation sequencing with no blocking probes. Mol Ecol Resour 14: 18-26.
    • (2014) Mol Ecol Resour , vol.14 , pp. 18-26
    • Piñol, J.1    San Andrés, V.2    Clare, E.L.3    Mir, G.4    Symondson, W.O.C.5
  • 17
    • 83955165237 scopus 로고    scopus 로고
    • PCR enrichment techniques to identify the diet of predators
    • O'Rorke R, Lavery S, Jeffs A (2012) PCR enrichment techniques to identify the diet of predators. Mol Ecol Resour 12: 5-17.
    • (2012) Mol Ecol Resour , vol.12 , pp. 5-17
    • O'Rorke, R.1    Lavery, S.2    Jeffs, A.3
  • 18
    • 84855781554 scopus 로고    scopus 로고
    • Rapid plant identification using species- and group-specific primers targeting chloroplast DNA
    • Wallinger C, Juen A, Staudacher K, Schallhart N, Mitterrutzner E, et al. (2012) Rapid plant identification using species- and group-specific primers targeting chloroplast DNA. PLoS ONE 7: e29473.
    • (2012) PLoS ONE , vol.7 , pp. e29473
    • Wallinger, C.1    Juen, A.2    Staudacher, K.3    Schallhart, N.4    Mitterrutzner, E.5
  • 19
    • 38849100922 scopus 로고    scopus 로고
    • Molecular analysis of predation: A review of best practice for DNA-based approaches
    • King RA, Read DS, Traugott M, Symondson WOC (2008) Molecular analysis of predation: a review of best practice for DNA-based approaches. Mol Ecol 17: 947-963.
    • (2008) Mol Ecol , vol.17 , pp. 947-963
    • King, R.A.1    Read, D.S.2    Traugott, M.3    Symondson, W.O.C.4
  • 20
    • 84870934222 scopus 로고    scopus 로고
    • Advances in multiplex PCR: Balancing primer efficiencies and improving detection success
    • Sint D, Raso L, Traugott M (2012) Advances in multiplex PCR: balancing primer efficiencies and improving detection success. Methods Ecol Evol 3: 898-905.
    • (2012) Methods Ecol Evol , vol.3 , pp. 898-905
    • Sint, D.1    Raso, L.2    Traugott, M.3
  • 21
    • 14844302832 scopus 로고    scopus 로고
    • Rapid screening of invertebrate predators for multiple prey DNA targets
    • Harper GL, King RA, Dodd CS, Harwood JD, Glen DM, et al. (2005) Rapid screening of invertebrate predators for multiple prey DNA targets. Mol Ecol 14: 819-827.
    • (2005) Mol Ecol , vol.14 , pp. 819-827
    • Harper, G.L.1    King, R.A.2    Dodd, C.S.3    Harwood, J.D.4    Glen, D.M.5
  • 22
    • 43949105816 scopus 로고    scopus 로고
    • Group-specific primers for DNA-based detection of springtails (Hexapoda: Collembola) within predator gut contents
    • Kuusk AK, Agustí N (2008) Group-specific primers for DNA-based detection of springtails (Hexapoda: Collembola) within predator gut contents. Mol Ecol Resour 8: 678-681.
    • (2008) Mol Ecol Resour , vol.8 , pp. 678-681
    • Kuusk, A.K.1    Agustí, N.2
  • 23
    • 79751500693 scopus 로고    scopus 로고
    • Multiplex reactions for the molecular detection of predation on pest and nonpest invertebrates in agroecosystems
    • King RA, Moreno-Ripoll R, Agustí N, Shayler SP, Bell JR, et al. (2011) Multiplex reactions for the molecular detection of predation on pest and nonpest invertebrates in agroecosystems. Mol Ecol Resour 11: 370-373.
    • (2011) Mol Ecol Resour , vol.11 , pp. 370-373
    • King, R.A.1    Moreno-Ripoll, R.2    Agustí, N.3    Shayler, S.P.4    Bell, J.R.5
  • 24
    • 84856752038 scopus 로고    scopus 로고
    • Application of multiplex PCR approaches for shark molecular identification: Feasibility and applications for fisheries management and conservation in the Eastern Tropical Pacific
    • Caballero S, Cardenosa D, Soler G, Hyde J (2012) Application of multiplex PCR approaches for shark molecular identification: feasibility and applications for fisheries management and conservation in the Eastern Tropical Pacific. Mol Ecol Resour 12: 233-237.
    • (2012) Mol Ecol Resour , vol.12 , pp. 233-237
    • Caballero, S.1    Cardenosa, D.2    Soler, G.3    Hyde, J.4
  • 25
    • 33646257047 scopus 로고    scopus 로고
    • Earthworm primers for DNA-based gut content analysis and their cross-reactivity in a multi-species system
    • Admassu B, Juen A, Traugott M (2006) Earthworm primers for DNA-based gut content analysis and their cross-reactivity in a multi-species system. Soil Biol Biochem 38: 1308-1315.
    • (2006) Soil Biol Biochem , vol.38 , pp. 1308-1315
    • Admassu, B.1    Juen, A.2    Traugott, M.3
  • 26
    • 84872043991 scopus 로고    scopus 로고
    • Detecting aphid predation by earwigs in organic citrus orchards using molecular markers
    • Romeu-Dalmau C, Pinol J, Agustí N (2012) Detecting aphid predation by earwigs in organic citrus orchards using molecular markers. Bull Entomol Res: 1-7.
    • (2012) Bull Entomol Res , pp. 1-7
    • Romeu-Dalmau, C.1    Pinol, J.2    Agustí, N.3
  • 27
    • 0025623491 scopus 로고
    • The predators of insects
    • Schoenly K (1990) The predators of insects. Ecol Entomol 15: 333-345.
    • (1990) Ecol Entomol , vol.15 , pp. 333-345
    • Schoenly, K.1
  • 28
    • 1942517869 scopus 로고    scopus 로고
    • Group-specific polymerase chain reaction for DNA-based analysis of species diversity and identity in dietary samples
    • Jarman SN, Deagle BE, Gales NJ (2004) Group-specific polymerase chain reaction for DNA-based analysis of species diversity and identity in dietary samples. Mol Ecol 13: 1313-1322.
    • (2004) Mol Ecol , vol.13 , pp. 1313-1322
    • Jarman, S.N.1    Deagle, B.E.2    Gales, N.J.3
  • 29
    • 33847371187 scopus 로고    scopus 로고
    • Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding
    • Taberlet P, Coissac E, Pompanon F, Gielly L, Miquel C, et al. (2007) Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding. Nucleic Acids Res 35: e14.
    • (2007) Nucleic Acids Res , vol.35 , pp. e14
    • Taberlet, P.1    Coissac, E.2    Pompanon, F.3    Gielly, L.4    Miquel, C.5
  • 30
    • 33749535839 scopus 로고    scopus 로고
    • DNA barcoding and taxonomy in Diptera: A tale of high intraspecific variability and low identification success
    • Meier R, Shiyang K, Vaidya G, Ng PKL (2006) DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success. Syst Biol 55: 715-728.
    • (2006) Syst Biol , vol.55 , pp. 715-728
    • Meier, R.1    Shiyang, K.2    Vaidya, G.3    Ng, P.K.L.4
  • 31
    • 7044281587 scopus 로고    scopus 로고
    • Ribosomal DNA gene and phylogenetic relationships of Diplura and lower Hexapods
    • Luan Y, Zhang Y, Yue Q, Pang J, Xie R, et al. (2003) Ribosomal DNA gene and phylogenetic relationships of Diplura and lower Hexapods. Science in China (Series C) 46: 67-76.
    • (2003) Science in China (Series C) , vol.46 , pp. 67-76
    • Luan, Y.1    Zhang, Y.2    Yue, Q.3    Pang, J.4    Xie, R.5
  • 32
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 33
    • 33745978169 scopus 로고    scopus 로고
    • Amplification facilitators and multiplex PCR: Tools to overcome PCR-inhibition in DNA-gut-content analysis of soil-living invertebrates
    • Juen A, Traugott M (2006) Amplification facilitators and multiplex PCR: Tools to overcome PCR-inhibition in DNA-gut-content analysis of soil-living invertebrates. Soil Biol Biochem 38: 1872-1879.
    • (2006) Soil Biol Biochem , vol.38 , pp. 1872-1879
    • Juen, A.1    Traugott, M.2
  • 34
    • 0029151279 scopus 로고
    • Low concentrations of tetramethylammonium chloride increase yield and specificity of PCR
    • Chevet E, Lemaitre G, Katinka MD (1995) Low concentrations of tetramethylammonium chloride increase yield and specificity of PCR. Nucleic Acids Res 23: 3343-3344.
    • (1995) Nucleic Acids Res , vol.23 , pp. 3343-3344
    • Chevet, E.1    Lemaitre, G.2    Katinka, M.D.3
  • 36
    • 84873739311 scopus 로고    scopus 로고
    • The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools
    • Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, et al. (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 41: D590-D596.
    • (2013) Nucleic Acids Res , vol.41 , pp. D590-D596
    • Quast, C.1    Pruesse, E.2    Yilmaz, P.3    Gerken, J.4    Schweer, T.5
  • 37
    • 12944263588 scopus 로고    scopus 로고
    • Detecting predation and scavenging by DNA gut-content analysis: A case study using a soil insect predator-prey system
    • Juen A, Traugott M (2005) Detecting predation and scavenging by DNA gut-content analysis: a case study using a soil insect predator-prey system. Oecologia 142: 344-352.
    • (2005) Oecologia , vol.142 , pp. 344-352
    • Juen, A.1    Traugott, M.2
  • 38
    • 80051701364 scopus 로고    scopus 로고
    • Optimizing methods for PCR-based analysis of predation
    • Sint D, Raso L, Kaufmann R, Traugott M (2011) Optimizing methods for PCR-based analysis of predation. Mol Ecol Resour 11: 795-801.
    • (2011) Mol Ecol Resour , vol.11 , pp. 795-801
    • Sint, D.1    Raso, L.2    Kaufmann, R.3    Traugott, M.4
  • 39
    • 0028528103 scopus 로고
    • DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
    • Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol 3: 294-299.
    • (1994) Mol Mar Biol Biotechnol , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Hoeh, W.3    Lutz, R.4    Vrijenhoek, R.5
  • 40
    • 84892862718 scopus 로고    scopus 로고
    • Establishment of group-specific PCR primers for the identification of freshwater macroinvertebrates
    • Koester M, Classen S, Gergs R (2013) Establishment of group-specific PCR primers for the identification of freshwater macroinvertebrates. Conservation Genetics Resources 5: 1091-1093.
    • (2013) Conservation Genetics Resources , vol.5 , pp. 1091-1093
    • Koester, M.1    Classen, S.2    Gergs, R.3
  • 41
    • 72849126924 scopus 로고    scopus 로고
    • A PCR-based method for diet analysis in freshwater organisms using 18S rDNA barcoding on faeces
    • Corse E, Costedoat C, Chappaz R, Mi, Pech N, et al. (2010) A PCR-based method for diet analysis in freshwater organisms using 18S rDNA barcoding on faeces. Mol Ecol Resour 10: 96-108.
    • (2010) Mol Ecol Resour , vol.10 , pp. 96-108
    • Corse, E.1    Costedoat, C.2    Chappaz, R.3    Mi Pech, N.4
  • 42
    • 84907984974 scopus 로고    scopus 로고
    • Environmental metabarcodes for insects: In silico PCR reveals potential for taxonomic bias
    • Clarke LJ, Soubrier J, Weyrich LS, Cooper A (2014) Environmental metabarcodes for insects: in silico PCR reveals potential for taxonomic bias. Mol Ecol Resour.
    • (2014) Mol Ecol Resour
    • Clarke, L.J.1    Soubrier, J.2    Weyrich, L.S.3    Cooper, A.4
  • 44
    • 65549088842 scopus 로고    scopus 로고
    • Empirical testing of 16S rRNA gene PCR primer pairs reveals variance in target specificity and efficacy not suggested by in silico analysis
    • Morales SE, Holben WE (2009) Empirical testing of 16S rRNA gene PCR primer pairs reveals variance in target specificity and efficacy not suggested by in silico analysis. Appl Environ Microbiol 75: 2677-2683.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2677-2683
    • Morales, S.E.1    Holben, W.E.2
  • 47
    • 84859625932 scopus 로고    scopus 로고
    • Next-generation sequencing technologies for environmental DNA research
    • Shokralla S, Spall JL, Gibson JF, Hajibabaei M (2012) Next-generation sequencing technologies for environmental DNA research. Mol Ecol 21: 1794-1805.
    • (2012) Mol Ecol , vol.21 , pp. 1794-1805
    • Shokralla, S.1    Spall, J.L.2    Gibson, J.F.3    Hajibabaei, M.4
  • 48
    • 84875104888 scopus 로고    scopus 로고
    • A DNA metabarcoding study of a primate dietary diversity and plasticity across its entire fragmented range
    • Quemere E, Hibert F, Miquel C, Lhuillier E, Rasolondraibe E, et al. (2013) A DNA metabarcoding study of a primate dietary diversity and plasticity across its entire fragmented range. PLoS ONE 8: e58971.
    • (2013) PLoS ONE , vol.8 , pp. e58971
    • Quemere, E.1    Hibert, F.2    Miquel, C.3    Lhuillier, E.4    Rasolondraibe, E.5
  • 49
    • 84870930021 scopus 로고    scopus 로고
    • Improving PCR detection of prey in molecular diet studies: Importance of group-specific primer set selection and extraction protocol performances
    • Zarzoso-Lacoste D, Corse E, Vidal E (2013) Improving PCR detection of prey in molecular diet studies: importance of group-specific primer set selection and extraction protocol performances. Mol Ecol Resour 13: 117-127.
    • (2013) Mol Ecol Resour , vol.13 , pp. 117-127
    • Zarzoso-Lacoste, D.1    Corse, E.2    Vidal, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.