-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. Journal of Molecular Biology, 215, 403-410.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
34547834963
-
The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing
-
Binladen J, Gilbert MTP, Bollback JP et al. (2007) The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing. PLoS One, 2, e197.
-
(2007)
PLoS One
, vol.2
-
-
Binladen, J.1
Gilbert, M.T.P.2
Bollback, J.P.3
-
3
-
-
84855194204
-
Targeted amplicon sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics
-
Bybee SM, Bracken-Grissom H, Haynes BD et al. (2011) Targeted amplicon sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics. Genome Biology and Evolution, 3, 1312-1323.
-
(2011)
Genome Biology and Evolution
, vol.3
, pp. 1312-1323
-
-
Bybee, S.M.1
Bracken-Grissom, H.2
Haynes, B.D.3
-
4
-
-
80052746651
-
Strategy for modular tagged high-throughput amplicon sequencing
-
de Cárcer DA, Denman SE, McSweeney C, Morrison M (2011) Strategy for modular tagged high-throughput amplicon sequencing. Applied and Environmental Microbiology, 77, 6310-6312.
-
(2011)
Applied and Environmental Microbiology
, vol.77
, pp. 6310-6312
-
-
de Cárcer, D.A.1
Denman, S.E.2
McSweeney, C.3
Morrison, M.4
-
6
-
-
84874598852
-
TagGD: fast and accurate software for DNA tag generation and demultiplexing
-
Costea PI, Lundeberg J, Akan P (2013) TagGD: fast and accurate software for DNA tag generation and demultiplexing. PLoS One, 8, e57521.
-
(2013)
PLoS One
, vol.8
-
-
Costea, P.I.1
Lundeberg, J.2
Akan, P.3
-
7
-
-
0028820187
-
Solid-phase reversible immobilization for the isolation of PCR products
-
DeAngelis MM, Wang DG, Hawkins TL (1995) Solid-phase reversible immobilization for the isolation of PCR products. Nucleic Acids Research, 23, 4742-4743.
-
(1995)
Nucleic Acids Research
, vol.23
, pp. 4742-4743
-
-
DeAngelis, M.M.1
Wang, D.G.2
Hawkins, T.L.3
-
8
-
-
84890242255
-
-
Geneious v5.6.3. Available from
-
Drummond AJ, Ashton B, Buxton S et al. (2011) Geneious v5.6.3. Available from http://www.geneious.com.
-
(2011)
-
-
Drummond, A.J.1
Ashton, B.2
Buxton, S.3
-
9
-
-
84865046802
-
Not all sequence tags are created equal: designing and validating sequence identification tags robust to indels
-
Faircloth BC, Glenn TC (2012) Not all sequence tags are created equal: designing and validating sequence identification tags robust to indels. PLoS One, 7, e42543.
-
(2012)
PLoS One
, vol.7
-
-
Faircloth, B.C.1
Glenn, T.C.2
-
10
-
-
0028528103
-
DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
-
Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294-299.
-
(1994)
Molecular Marine Biology and Biotechnology
, vol.3
, pp. 294-299
-
-
Folmer, O.1
Black, M.2
Hoeh, W.3
Lutz, R.4
Vrijenhoek, R.5
-
11
-
-
79954587407
-
Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos
-
Hajibabaei M, Shokralla S, Zhou X, Singer GAC, Baird DJ (2011) Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos. PLoS One, 6, e17497.
-
(2011)
PLoS One
, vol.6
-
-
Hajibabaei, M.1
Shokralla, S.2
Zhou, X.3
Singer, G.A.C.4
Baird, D.J.5
-
12
-
-
41449113547
-
Multiplex-Ready PCR: a new method for multiplexed SSR and SNP genotyping
-
Hayden MJ, Nguyen TM, Waterman A, Chalmers KJ (2008a) Multiplex-Ready PCR: a new method for multiplexed SSR and SNP genotyping. BMC Genomics, 9, 80.
-
(2008)
BMC Genomics
, vol.9
, pp. 80
-
-
Hayden, M.J.1
Nguyen, T.M.2
Waterman, A.3
Chalmers, K.J.4
-
13
-
-
39749190632
-
Application of multiplex-ready PCR for fluorescence-based SSR genotyping in barley and wheat
-
Hayden MJ, Nguyen TM, Waterman A, McMichael GL, Chalmers KJ (2008b) Application of multiplex-ready PCR for fluorescence-based SSR genotyping in barley and wheat. Molecular Breeding, 21, 271-281.
-
(2008)
Molecular Breeding
, vol.21
, pp. 271-281
-
-
Hayden, M.J.1
Nguyen, T.M.2
Waterman, A.3
McMichael, G.L.4
Chalmers, K.J.5
-
14
-
-
33751313616
-
An inexpensive, automation-friendly protocol for recovering high-quality DNA
-
Ivanova NV, deWaard JR, Hebert PDN (2006) An inexpensive, automation-friendly protocol for recovering high-quality DNA. Molecular Ecology Notes, 6, 998-1002.
-
(2006)
Molecular Ecology Notes
, vol.6
, pp. 998-1002
-
-
Ivanova, N.V.1
deWaard, J.R.2
Hebert, P.D.N.3
-
15
-
-
84890244004
-
-
CCDB protocols, glass fiber plate DNA extraction. Available from
-
Ivanova NV, deWaard JR, Hebert PDN (2007) CCDB protocols, glass fiber plate DNA extraction. Available from http://ccdb.ca/docs/CCDB_DNA_Extraction.pdf.
-
(2007)
-
-
Ivanova, N.V.1
deWaard, J.R.2
Hebert, P.D.N.3
-
16
-
-
77956313182
-
Increased throughput by parallelization of library preparation for massive sequencing
-
Lundin S, Stranneheim H, Pettersson E, Klevebring D, Lundeberg J (2010) Increased throughput by parallelization of library preparation for massive sequencing. PLoS One, 5, e10029.
-
(2010)
PLoS One
, vol.5
-
-
Lundin, S.1
Stranneheim, H.2
Pettersson, E.3
Klevebring, D.4
Lundeberg, J.5
-
17
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin M (2011) Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.journal, 17, 10-12.
-
(2011)
EMBnet.journal
, vol.17
, pp. 10-12
-
-
Martin, M.1
-
18
-
-
77956285690
-
Illumina sequencing library preparation for highly multiplexed target capture and sequencing
-
doi:10.1101/pdb.prot5448.
-
Meyer M, Kircher M (2010) Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harbor Protocols, doi:10.1101/pdb.prot5448.
-
(2010)
Cold Spring Harbor Protocols
-
-
Meyer, M.1
Kircher, M.2
-
19
-
-
84872864542
-
Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex
-
O'Neill EM, Schwartz R, Bullock CT et al. (2013) Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex. Molecular Ecology, 22, 111-129.
-
(2013)
Molecular Ecology
, vol.22
, pp. 111-129
-
-
O'Neill, E.M.1
Schwartz, R.2
Bullock, C.T.3
-
20
-
-
33845385936
-
Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA
-
Simon C, Buckley TR, Frati F, Stewart JB, Beckenbach AT (2006) Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA. Annual Review of Ecology, Evolution and Systematics, 37, 545-579.
-
(2006)
Annual Review of Ecology, Evolution and Systematics
, vol.37
, pp. 545-579
-
-
Simon, C.1
Buckley, T.R.2
Frati, F.3
Stewart, J.B.4
Beckenbach, A.T.5
-
21
-
-
78650499408
-
Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate
-
Sønstebø JH, Gielly L, Brysting AK et al. (2010) Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate. Molecular Ecology Resources, 10, 1009-1018.
-
(2010)
Molecular Ecology Resources
, vol.10
, pp. 1009-1018
-
-
Sønstebø, J.H.1
Gielly, L.2
Brysting, A.K.3
-
22
-
-
0031149615
-
Assessment of the universality and utility of a set of conserved mitochondrial COI primers in insects
-
Zhang D-X, Hewitt GM (1997) Assessment of the universality and utility of a set of conserved mitochondrial COI primers in insects. Insect Molecular Biology, 6, 143-150.
-
(1997)
Insect Molecular Biology
, vol.6
, pp. 143-150
-
-
Zhang, D.-X.1
Hewitt, G.M.2
|