-
1
-
-
0141481286
-
Effects of current velocity on the nascent architecture of stream microbial biofilms
-
Battin, T.J., L.A. Kaplan, J.D. Newbold, X. Cheng, and C. Hansen. 2003. Effects of current velocity on the nascent architecture of stream microbial biofilms. Appl. Environ. Microbiol. 69:5443–5452.
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 5443-5452
-
-
Battin, T.J.1
Kaplan, L.A.2
Newbold, J.D.3
Cheng, X.4
Hansen, C.5
-
2
-
-
33744921641
-
Microbial ecology of drinking water distribution systems
-
Berry, D., C. Xi, and L. Raskin. 2006. Microbial ecology of drinking water distribution systems. Curr. Opin. Biotechnol. 17:297–302.
-
(2006)
Curr. Opin. Biotechnol
, vol.17
, pp. 297-302
-
-
Berry, D.1
Xi, C.2
Raskin, L.3
-
3
-
-
0036843276
-
Bulk water phase and biofilm growth in drinking water at low nutrient conditions
-
Boe-Hansen, R., H.J. Albrechtsen, E. Arvin, and C. Jorgensen. 2002. Bulk water phase and biofilm growth in drinking water at low nutrient conditions. Water Res. 36:4477–4486.
-
(2002)
Water Res
, vol.36
, pp. 4477-4486
-
-
Boe-Hansen, R.1
Albrechtsen, H.J.2
Arvin, E.3
Jorgensen, C.4
-
4
-
-
65549156189
-
Effects of thermal energy discharge on shallow groundwater ecosystems
-
Brielmann, H., C. Griebler, S.I. Schmidt, R. Michel, and T. Lueders. 2009. Effects of thermal energy discharge on shallow groundwater ecosystems. FEMS Microbiol. Ecol. 68:273–286.
-
(2009)
FEMS Microbiol. Ecol
, vol.68
, pp. 273-286
-
-
Brielmann, H.1
Griebler, C.2
Schmidt, S.I.3
Michel, R.4
Lueders, T.5
-
5
-
-
57949101012
-
Molecular characterization of microbial populations in groundwater sources and sand filters for drinking water production
-
de Vet, W.W.J.M., I.J.T. Dinkla, G. Muyzer, L.C. Rietveld, and M.C.M. van Loosdrecht. 2009. Molecular characterization of microbial populations in groundwater sources and sand filters for drinking water production. Water Res. 43:182–194.
-
(2009)
Water Res
, vol.43
, pp. 182-194
-
-
De Vet, W.W.J.M.1
Dinkla, I.J.T.2
Muyzer, G.3
Rietveld, L.C.4
Van Loosdrecht, M.C.M.5
-
6
-
-
84896928467
-
Selective transport of plant root-associated bacterial populations in agricultural soils upon snowmelt
-
Dibbern, D., A. Schmalwasser, T. Lueders, and K.U. Totsche. 2014. Selective transport of plant root-associated bacterial populations in agricultural soils upon snowmelt. Soil Biol. Biochem. 69:187–196.
-
(2014)
Soil Biol.Biochem
, vol.69
, pp. 187-196
-
-
Dibbern, D.1
Schmalwasser, A.2
Lueders, T.3
Totsche, K.U.4
-
8
-
-
0003183341
-
98/83/EC of 3 November 1998 on the quality of water intended for human consumption
-
EC Council Directive. 1998. 98/83/EC of 3 November 1998 on the quality of water intended for human consumption. Official Journal of the European Communities 330:32.
-
(1998)
Official Journal of the European Communities
, vol.330
, pp. 32
-
-
-
9
-
-
79952695228
-
Interaction of Legionella pneumophila and Helicobacter pylori with bacterial species isolated from drinking water biofilms
-
Gião, M.S., N.F. Azevedo, S.A. Wilks, M.J. Vieira, and C.W. Keevil. 2011. Interaction of Legionella pneumophila and Helicobacter pylori with bacterial species isolated from drinking water biofilms. BMC Microbiol. 11:57.
-
(2011)
BMC Microbiol
, vol.11
, pp. 57
-
-
Gião, M.S.1
Azevedo, N.F.2
Wilks, S.A.3
Vieira, M.J.4
Keevil, C.W.5
-
11
-
-
84861150734
-
Analysis of structure and composition of bacterial core communities in mature drinking water biofilms and bulk water of a citywide network in Germany
-
Henne, K., L. Kahlisch, I. Brettar, and M.G. Höfle. 2012. Analysis of structure and composition of bacterial core communities in mature drinking water biofilms and bulk water of a citywide network in Germany. Appl. Environ. Microbiol. 78:3530–3538.
-
(2012)
Appl. Environ. Microbiol
, vol.78
, pp. 3530-3538
-
-
Henne, K.1
Kahlisch, L.2
Brettar, I.3
Höfle, M.G.4
-
13
-
-
0001942144
-
A general hypothesis of species diversity
-
Huston, M. 1979. A general hypothesis of species diversity. Am. Nat. 113:81–101.
-
(1979)
Am. Nat
, vol.113
, pp. 81-101
-
-
Huston, M.1
-
14
-
-
84863358473
-
Evaluation of methods for the extraction of DNA from drinking water distribution system biofilms
-
Hwang, C., F. Ling, G.L. Andersen, M.W. LeChevallier, and W.-T. Liu. 2012. Evaluation of methods for the extraction of DNA from drinking water distribution system biofilms. Microbes Environ. 27:9–18.
-
(2012)
Microbes Environ
, vol.27
, pp. 9-18
-
-
Hwang, C.1
Ling, F.2
Andersen, G.L.3
Lechevallier, M.W.4
Liu, W.-T.5
-
15
-
-
84868622992
-
Microbial community dynamics of an urban drinking water distribution system subjected to phases of chloramination and chlorination treatments
-
Hwang, C., F. Ling, G.L. Andersen, M.W. LeChevallier, and W.-T. Liu. 2012. Microbial community dynamics of an urban drinking water distribution system subjected to phases of chloramination and chlorination treatments. Appl. Environ. Microbiol. 78:7856–7865.
-
(2012)
Appl. Environ. Microbiol
, vol.78
, pp. 7856-7865
-
-
Hwang, C.1
Ling, F.2
Andersen, G.L.3
Lechevallier, M.W.4
Liu, W.-T.5
-
16
-
-
38449096471
-
Partitioning diversity into independent alpha and beta components
-
Jost, L. 2007. Partitioning diversity into independent alpha and beta components. Ecology 88:2427–2439.
-
(2007)
Ecology
, vol.88
, pp. 2427-2439
-
-
Jost, L.1
-
17
-
-
79959615527
-
Intraspecific genotypic richness and relatedness predict the invasibility of microbial communities
-
Jousset, A., W. Schulz, S. Scheu, and N. Eisenhauer. 2011. Intraspecific genotypic richness and relatedness predict the invasibility of microbial communities. ISME J. 5:1108–1114.
-
(2011)
ISME J
, vol.5
, pp. 1108-1114
-
-
Jousset, A.1
Schulz, W.2
Scheu, S.3
Eisenhauer, N.4
-
18
-
-
84856733421
-
Assessing the viability of bacterial species in drinking water by combined cellular and molecular analyses
-
Kahlisch, L., K. Henne, L. Gröbe, I. Brettar, and M.G. Höfle. 2012. Assessing the viability of bacterial species in drinking water by combined cellular and molecular analyses. Microb. Ecol. 63:383–397.
-
(2012)
Microb.Ecol
, vol.63
, pp. 383-397
-
-
Kahlisch, L.1
Henne, K.2
Gröbe, L.3
Brettar, I.4
Höfle, M.G.5
-
19
-
-
66749083981
-
Signals, regulatory networks, and materials that build and break bacterial biofilms. Microbiol
-
Karatan, E., and P. Watnick. 2009. Signals, regulatory networks, and materials that build and break bacterial biofilms. Microbiol. Mol. Biol. Rev. 73:310–347.
-
(2009)
Mol. Biol. Rev
, vol.73
, pp. 310-347
-
-
Karatan, E.1
Watnick, P.2
-
20
-
-
0024531172
-
Clogging of groundwater recharge basins by cyanobacterial mats
-
Katznelson, R. 1989. Clogging of groundwater recharge basins by cyanobacterial mats. FEMS Microbiol. Lett. 62:231–242.
-
(1989)
FEMS Microbiol. Lett
, vol.62
, pp. 231-242
-
-
Katznelson, R.1
-
21
-
-
35648994383
-
Simultaneous nitrification and denitrification by diverse Diaphorobacter sp. Appl. Microbiol
-
Khardenavis, A.A., A. Kapley, and H.J. Purohit. 2007. Simultaneous nitrification and denitrification by diverse Diaphorobacter sp. Appl. Microbiol. Biotechnol. 77:403–409.
-
(2007)
Biotechnol
, vol.77
, pp. 403-409
-
-
Khardenavis, A.A.1
Kapley, A.2
Purohit, H.J.3
-
22
-
-
0001857117
-
-
In E. Stackebrandt, and M. Goodfellow (ed.). Nucleic Acid Techniques in Bacterial Systematics. John Wiley & Sons, New York
-
Lane, D. 1991. 16S/23S rRNA sequencing. p. 115–175. In E. Stackebrandt, and M. Goodfellow (ed.). Nucleic Acid Techniques in Bacterial Systematics. John Wiley & Sons, New York.
-
(1991)
16S/23S rRNA sequencing
, pp. 115-175
-
-
Lane, D.1
-
23
-
-
84876736576
-
A microbiology-based multi-parametric approach towards assessing biological stability in drinking water distribution networks
-
Lautenschlager, K., C. Hwang, W.-T. Liu, N. Boon, O. Köster, H. Vrouwenvelder, T. Egli, and F. Hammes. 2013. A microbiology-based multi-parametric approach towards assessing biological stability in drinking water distribution networks. Water Res. 47:3015–3025.
-
(2013)
Water Res
, vol.47
, pp. 3015-3025
-
-
Lautenschlager, K.1
Hwang, C.2
Liu, W.-T.3
Boon, N.4
Köster, O.5
Vrouwenvelder, H.6
Egli, T.7
Hammes, F.8
-
24
-
-
84877662171
-
Quantification and identification of particle-associated bacteria in unchlorinated drinking water from three treatment plants by cultivation-independent methods
-
Liu, G., F. Ling, A. Magic-Knezev, W. Liu, J. Verberk, and J. Van Dijk. 2013. Quantification and identification of particle-associated bacteria in unchlorinated drinking water from three treatment plants by cultivation-independent methods. Water Res. 47:3523–3533.
-
(2013)
Water Res
, vol.47
, pp. 3523-3533
-
-
Liu, G.1
Ling, F.2
Magic-Knezev, A.3
Liu, W.4
Verberk, J.5
Van Dijk, J.6
-
25
-
-
22144445304
-
Diversity of bacteria growing in natural mineral water after bottling
-
Loy, A., W. Beisker, and H. Meier. 2005. Diversity of bacteria growing in natural mineral water after bottling. Appl. Environ. Microbiol. 71:3624–3632.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 3624-3632
-
-
Loy, A.1
Beisker, W.2
Meier, H.3
-
26
-
-
44849128805
-
Species divergence and the measurement of microbial diversity
-
Lozupone, C.A., and R. Knight. 2008. Species divergence and the measurement of microbial diversity. FEMS Microbiol. Rev. 32:557– 578.
-
(2008)
FEMS Microbiol. Rev
, vol.32
, pp. 557-578
-
-
Lozupone, C.A.1
Knight, R.2
-
27
-
-
29144436638
-
Identification of bacteria in biofilm and bulk water samples from a nonchlorinated model drinking water distribution system: Detection of a large nitrite-oxidizing population associated with Nitrospira spp
-
Martiny, A.C., H.J. Albrechtsen, E. Arvin, and S. Molin. 2005. Identification of bacteria in biofilm and bulk water samples from a nonchlorinated model drinking water distribution system: detection of a large nitrite-oxidizing population associated with Nitrospira spp. Appl. Environ. Microbiol. 71:8611–8617.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 8611-8617
-
-
Martiny, A.C.1
Albrechtsen, H.J.2
Arvin, E.3
Molin, S.4
-
28
-
-
33846689859
-
Microbial community succession in an unvegetated, recently deglaciated soil
-
Nemergut, D.R., S.P. Anderson, C.C. Cleveland, A.P. Martin, A.E. Miller, A. Seimon, and S.K. Schmidt. 2007. Microbial community succession in an unvegetated, recently deglaciated soil. Microb. Ecol. 53:110–122.
-
(2007)
Microb. Ecol
, vol.53
, pp. 110-122
-
-
Nemergut, D.R.1
Anderson, S.P.2
Cleveland, C.C.3
Martin, A.P.4
Miller, A.E.5
Seimon, A.6
Schmidt, S.K.7
-
29
-
-
84872497741
-
Package Vegan: Community ecology package
-
Oksanen, J., F.G. Blanchet, R. Kindt, et al. 2013. Package Vegan: Community ecology package, version 2.0-10; http://CRAN.R-project. org/package=vegan.
-
(2013)
version 2.0-10
-
-
Oksanen, J.1
Blanchet, F.G.2
Kindt, R.3
-
30
-
-
84863739532
-
Testing the limits of 454 pyrotag sequencing: Reproducibility, quantitative assessment and comparison to T-RFLP fingerprinting of aquifer microbes
-
Pilloni, G., M.S. Granitsiotis, M. Engel, and T. Lueders. 2012. Testing the limits of 454 pyrotag sequencing: reproducibility, quantitative assessment and comparison to T-RFLP fingerprinting of aquifer microbes. PloS ONE 7:e40467.
-
(2012)
PloS ONE
, pp. 7
-
-
Pilloni, G.1
Granitsiotis, M.S.2
Engel, M.3
Lueders, T.4
-
31
-
-
84865048843
-
Bacterial community structure in the drinking water microbiome is governed by filtration processes
-
Pinto, A.J., C. Xi, and L. Raskin. 2012. Bacterial community structure in the drinking water microbiome is governed by filtration processes. Environ. Sci. Technol. 46:8851–8859.
-
(2012)
Environ. Sci. Technol
, vol.46
, pp. 8851-8859
-
-
Pinto, A.J.1
Xi, C.2
Raskin, L.3
-
32
-
-
84907684136
-
R: A language and environment for statistical computing
-
Vienna, Austria
-
R Development CoreTeam. 2013. R: A language and environment for statistical computing. R Foundation for Statistical Computing: Vienna, Austria. http://www.R-project.org.
-
(2013)
R Foundation for Statistical Computing
-
-
Development Coreteam, R.1
-
33
-
-
76749161360
-
Identification of bacterial populations in drinking water using 16S rRNA-based sequence analyses
-
Revetta, R.P., A. Pemberton, R. Lamendella, B. Iker, and J.W. Santo Domingo. 2010. Identification of bacterial populations in drinking water using 16S rRNA-based sequence analyses. Water Res. 44:1353–1360.
-
(2010)
Water Res
, vol.44
, pp. 1353-1360
-
-
Revetta, R.P.1
Pemberton, A.2
Lamendella, R.3
Iker, B.4
Santo Domingo, J.W.5
-
34
-
-
0035064839
-
Clogging of a limestone fracture by stimulating groundwater microbes
-
Ross, N., R. Villemur, L. Deschênes, and R. Samson. 2001. Clogging of a limestone fracture by stimulating groundwater microbes. Water Res. 35:2029–2037.
-
(2001)
Water Res
, vol.35
, pp. 2029-2037
-
-
Ross, N.1
Villemur, R.2
Deschênes, L.3
Samson, R.4
-
35
-
-
32044462938
-
Extracellular polymeric substances mediate bioleaching/biocorrosion via interfacial processes involving iron (III) ions and acidophilic bacteria. Res
-
Sand, W., and T. Gehrke. 2006. Extracellular polymeric substances mediate bioleaching/biocorrosion via interfacial processes involving iron (III) ions and acidophilic bacteria. Res. Microbiol. 157:49–56.
-
(2006)
Microbiol
, vol.157
, pp. 49-56
-
-
Sand, W.1
Gehrke, T.2
-
36
-
-
83355173006
-
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNAbased studies
-
Schloss, P.D., D. Gevers, and S.L. Westcott. 2011. Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNAbased studies. PloS ONE 6:e27310.
-
(2011)
PloS ONE
, pp. 6
-
-
Schloss, P.D.1
Gevers, D.2
Westcott, S.L.3
-
37
-
-
2142687116
-
Metagenome survey of biofilms in drinking-water networks
-
Schmeisser, C., C. Stockigt, C. Raasch, et al. 2003. Metagenome survey of biofilms in drinking-water networks. Appl. Environ. Microbiol. 69:7298–7309.
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 7298-7309
-
-
Schmeisser, C.1
Stockigt, C.2
Raasch, C.3
-
38
-
-
39149100341
-
Physiological heterogeneity in biofilms. Nat
-
Stewart, P.S., and M.J. Franklin. 2008. Physiological heterogeneity in biofilms. Nat. Rev. Microbiol. 6:199–210.
-
(2008)
Rev. Microbiol
, vol.6
, pp. 199-210
-
-
Stewart, P.S.1
Franklin, M.J.2
-
39
-
-
0034566117
-
Microbiological safety of drinking water
-
Szewzyk, U., R. Szewzyk, W. Manz, and K.-H. Schleifer. 2000. Microbiological safety of drinking water. Annu. Rev. Microbiol. 54:81–127.
-
(2000)
Annu. Rev. Microbiol
, vol.54
, pp. 81-127
-
-
Szewzyk, U.1
Szewzyk, R.2
Manz, W.3
Schleifer, K.-H.4
-
40
-
-
1542329599
-
Identification of the culturable and nonculturable bacterial population in ground water of a municipal water supply in Germany
-
Ultee, A., N. Souvatzi, K. Maniadi, and H. König. 2004. Identification of the culturable and nonculturable bacterial population in ground water of a municipal water supply in Germany. J. Appl. Microbiol. 96:560–568.
-
(2004)
J. Appl. Microbiol
, vol.96
, pp. 560-568
-
-
Ultee, A.1
Souvatzi, N.2
Maniadi, K.3
König, H.4
-
41
-
-
84355166737
-
Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys
-
Werner, J.J., O. Koren, P. Hugenholtz, T.Z. DeSantis, W.A. Walters, J.G. Caporaso, L.T. Angenent, R. Knight, and R.E. Ley. 2011. Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys. ISME J. 6:94–103.
-
(2011)
ISME J
, vol.6
, pp. 94-103
-
-
Werner, J.J.1
Koren, O.2
Hugenholtz, P.3
Desantis, T.Z.4
Walters, W.A.5
Caporaso, J.G.6
Angenent, L.T.7
Knight, R.8
Ley, R.E.9
-
42
-
-
2342501844
-
Phylogenetic diversity of drinking water bacteria in a distribution system simulator
-
Williams, M., J. Domingo, M. Meckes, C. Kelty, and H. Rochon. 2004. Phylogenetic diversity of drinking water bacteria in a distribution system simulator. J. Appl. Microbiol. 96:954–964.
-
(2004)
J. Appl. Microbiol
, vol.96
, pp. 954-964
-
-
Williams, M.1
Domingo, J.2
Meckes, M.3
Kelty, C.4
Rochon, H.5
-
43
-
-
79551481389
-
Concentration and diversity of uncultured Legionella spp. in two unchlorinated drinking water supplies with different concentrations of natural organic matter
-
Wullings, B.A., G. Bakker, and D. van der Kooij. 2011. Concentration and diversity of uncultured Legionella spp. in two unchlorinated drinking water supplies with different concentrations of natural organic matter. Appl. Environ. Microbiol. 77:634–641.
-
(2011)
Appl. Environ. Microbiol
, vol.77
, pp. 634-641
-
-
Wullings, B.A.1
Bakker, G.2
Van Der Kooij, D.3
-
44
-
-
77950346823
-
Microbial diversity in biofilms on water distribution pipes of different materials
-
Yu, J., D. Kim, and T. Lee. 2010. Microbial diversity in biofilms on water distribution pipes of different materials. Water Sci. Technol. 61:163–171.
-
(2010)
Water Sci. Technol
, vol.61
, pp. 163-171
-
-
Yu, J.1
Kim, D.2
Lee, T.3
-
45
-
-
56449107383
-
Globally distributed uncultivated oceanic N2-fixing cyanobacteria lack oxygenic photosystem II
-
Zehr, J.P., S.R. Bench, B.J. Carter, I. Hewson, F. Niazi, T. Shi, H.J. Tripp, and J.P. Affourtit. 2008. Globally distributed uncultivated oceanic N2-fixing cyanobacteria lack oxygenic photosystem II. Science 322:1110–1112.
-
(2008)
Science
, vol.322
, pp. 1110-1112
-
-
Zehr, J.P.1
Bench, S.R.2
Carter, B.J.3
Hewson, I.4
Niazi, F.5
Shi, T.6
Tripp, H.J.7
Affourtit, J.P.8
-
47
-
-
84871146244
-
Molecular analysis of bacterial communities in biofilms of a drinking water clearwell
-
Zhang, M., W. Liu, X. Nie, C. Li, J. Gu, and C. Zhang. 2012. Molecular analysis of bacterial communities in biofilms of a drinking water clearwell. Microbes Environ. 27:443–448.
-
(2012)
Microbes Environ
, vol.27
, pp. 443-448
-
-
Zhang, M.1
Liu, W.2
Nie, X.3
Li, C.4
Gu, J.5
Zhang, C.6
|