-
2
-
-
0028946084
-
Phylogenetic identification of in situ detection of individual microbial cells without cultivation
-
Amann R.I., Ludwig W., and Schleifer K.-H. Phylogenetic identification of in situ detection of individual microbial cells without cultivation. Microbiological Reviews 59 (1995) 143-169
-
(1995)
Microbiological Reviews
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.-H.3
-
3
-
-
55349125719
-
Influence of long time storage in mineral water on RNA stability of Pseudomonas aeruginosa and Escherichia coli after heat inactivation
-
Cenciarini C., Courtois S., Raoult D., and La Scola B. Influence of long time storage in mineral water on RNA stability of Pseudomonas aeruginosa and Escherichia coli after heat inactivation. Public Library of Science ONE 3 (2008) e3443. http://www.plosone.org/home.action
-
(2008)
Public Library of Science ONE
, vol.3
-
-
Cenciarini, C.1
Courtois, S.2
Raoult, D.3
La Scola, B.4
-
4
-
-
41049085212
-
Quantifying expression of a dissimilatory (bi)sulfite reductase gene in petroleum-contaminated marine harbor sediments
-
Chin K.J., Sharma M.L., Russell L.A., O'Neill K.R., and Lovley D.R. Quantifying expression of a dissimilatory (bi)sulfite reductase gene in petroleum-contaminated marine harbor sediments. Microbial Ecology 55 (2008) 489-499
-
(2008)
Microbial Ecology
, vol.55
, pp. 489-499
-
-
Chin, K.J.1
Sharma, M.L.2
Russell, L.A.3
O'Neill, K.R.4
Lovley, D.R.5
-
5
-
-
3042548836
-
The enigmatic Planctomycetes may hold a key to the origins of methanogenesis and methylotrophy
-
Chistoserdova L., Jenkins C., Kalyuzhnaya M.G., Marx C.J., Lapidus A., Vorholt J.A., Staley J.T., and Lidstrom M.E. The enigmatic Planctomycetes may hold a key to the origins of methanogenesis and methylotrophy. Molecular Biology and Evolution 21 (2004) 1234-1241
-
(2004)
Molecular Biology and Evolution
, vol.21
, pp. 1234-1241
-
-
Chistoserdova, L.1
Jenkins, C.2
Kalyuzhnaya, M.G.3
Marx, C.J.4
Lapidus, A.5
Vorholt, J.A.6
Staley, J.T.7
Lidstrom, M.E.8
-
6
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis T.Z., Hugenholtz P., Larsen N., Rojas M., Brodie E.L., Keller K., Huber T., Dalevi D., Hu P., and Andersen G.L. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Applied and Environmental Microbiology 72 (2006) 5069-5072
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
7
-
-
33644952712
-
Composition and dynamics of bacterial communities of a drinking water supply system as assessed by RNA- and DNA-based 16S rRNA gene fingerprinting
-
Eichler S., Christen R., Höltje C., Westphal P., Bötel J., Brettar I., Mehling A., and Höfle M.G. Composition and dynamics of bacterial communities of a drinking water supply system as assessed by RNA- and DNA-based 16S rRNA gene fingerprinting. Applied and Environmental Microbiology 72 (2006) 1858-1872
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 1858-1872
-
-
Eichler, S.1
Christen, R.2
Höltje, C.3
Westphal, P.4
Bötel, J.5
Brettar, I.6
Mehling, A.7
Höfle, M.G.8
-
8
-
-
50949090204
-
Novelty and uniqueness patterns of rare members of the soil biosphere
-
Elshahed M.S., Youssef N.H., Spain A.M., Sheik C., Najar F.Z., Sukharnikov L.O., Roe B.A., Davis J.P., Schloss P.D., Bailey V.L., and Krumholz L.R. Novelty and uniqueness patterns of rare members of the soil biosphere. Applied and Environmental Microbiology 74 (2008) 5422-5428
-
(2008)
Applied and Environmental Microbiology
, vol.74
, pp. 5422-5428
-
-
Elshahed, M.S.1
Youssef, N.H.2
Spain, A.M.3
Sheik, C.4
Najar, F.Z.5
Sukharnikov, L.O.6
Roe, B.A.7
Davis, J.P.8
Schloss, P.D.9
Bailey, V.L.10
Krumholz, L.R.11
-
9
-
-
54449090495
-
Persistence of Helicobacter pylori in heterotrophic drinking-water biofilms
-
Gião M.S., Azevedo N.F., Wilks S.A., Vieira M.J., and Keevil C.W. Persistence of Helicobacter pylori in heterotrophic drinking-water biofilms. Applied and Environmental Microbiology 74 (2008) 5898-5904
-
(2008)
Applied and Environmental Microbiology
, vol.74
, pp. 5898-5904
-
-
Gião, M.S.1
Azevedo, N.F.2
Wilks, S.A.3
Vieira, M.J.4
Keevil, C.W.5
-
10
-
-
63449091671
-
Incorporation of natural uncultivable Legionella pneumophila into potable water biofilms provides a protective niche against chlorination stress
-
Gião M.S., Wilks S., Azevedo N.F., Vieira M.J., and Keevil C.W. Incorporation of natural uncultivable Legionella pneumophila into potable water biofilms provides a protective niche against chlorination stress. Biofouling 25 (2009) 335-341
-
(2009)
Biofouling
, vol.25
, pp. 335-341
-
-
Gião, M.S.1
Wilks, S.2
Azevedo, N.F.3
Vieira, M.J.4
Keevil, C.W.5
-
11
-
-
13844313098
-
Identification of culturable bacteria present in hemodialysis water and fluid
-
Gomila M., Gascó J., Busquets A., Gil J., Bernabeu R., Buades J.M., and Lalucat J. Identification of culturable bacteria present in hemodialysis water and fluid. FEMS Microbiology Ecology 52 (2005) 101-114
-
(2005)
FEMS Microbiology Ecology
, vol.52
, pp. 101-114
-
-
Gomila, M.1
Gascó, J.2
Busquets, A.3
Gil, J.4
Bernabeu, R.5
Buades, J.M.6
Lalucat, J.7
-
12
-
-
0003425384
-
-
American Public Health Association, Washington, D.C
-
Greenberg A., Clesceri L., and Eaton A. Standard Methods for the Examination of Water and Wastewater. eighteenth ed. (1992), American Public Health Association, Washington, D.C
-
(1992)
Standard Methods for the Examination of Water and Wastewater. eighteenth ed.
-
-
Greenberg, A.1
Clesceri, L.2
Eaton, A.3
-
13
-
-
32044456940
-
Development of a rapid method for simultaneous recovery of diverse microbes in drinking water by ultrafiltration with sodium polyphosphate and surfactants
-
Hill V.R., Polaczyk A.L., Hahn D., Narayanan J., Cromeans T.L., Roberts J.M., and Amburgey J.E. Development of a rapid method for simultaneous recovery of diverse microbes in drinking water by ultrafiltration with sodium polyphosphate and surfactants. Applied and Environmental Microbiology 71 (2005) 6878-6884
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 6878-6884
-
-
Hill, V.R.1
Polaczyk, A.L.2
Hahn, D.3
Narayanan, J.4
Cromeans, T.L.5
Roberts, J.M.6
Amburgey, J.E.7
-
14
-
-
33751401032
-
DNA- versus RNA-based denaturing gradient gel electrophoresis profiles of a bacterial community during replenishment after soil fumigation
-
Hoshino Y.T., and Matsumoto N. DNA- versus RNA-based denaturing gradient gel electrophoresis profiles of a bacterial community during replenishment after soil fumigation. Soil Biology and Biochemistry 39 (2007) 434-444
-
(2007)
Soil Biology and Biochemistry
, vol.39
, pp. 434-444
-
-
Hoshino, Y.T.1
Matsumoto, N.2
-
15
-
-
50049102753
-
Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition-FISH
-
Hoshino T., Yilmaz L.S., Noguera D.R., Daims H., and Wagner M. Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition-FISH. Applied and Environmental Microbiology 74 (2008) 5068-5077
-
(2008)
Applied and Environmental Microbiology
, vol.74
, pp. 5068-5077
-
-
Hoshino, T.1
Yilmaz, L.S.2
Noguera, D.R.3
Daims, H.4
Wagner, M.5
-
16
-
-
5044240973
-
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
-
Huber T., Faulkner G., and Hugenholtz P. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20 (2004) 2317-2319
-
(2004)
Bioinformatics
, vol.20
, pp. 2317-2319
-
-
Huber, T.1
Faulkner, G.2
Hugenholtz, P.3
-
17
-
-
0000225313
-
Similarity analysis of rRNAs
-
Gerhardt P., Murray R.G.E., Wood W.A., and Krieg N.R. (Eds), American Society for Microbiology, Washington, DC
-
Johnson J.L. Similarity analysis of rRNAs. In: Gerhardt P., Murray R.G.E., Wood W.A., and Krieg N.R. (Eds). Methods for General and Molecular Bacteriology (1994), American Society for Microbiology, Washington, DC 683-700
-
(1994)
Methods for General and Molecular Bacteriology
, pp. 683-700
-
-
Johnson, J.L.1
-
18
-
-
0030716777
-
Isolation of new bacterial species from drinking water biofilms and proof of their in situ dominance with highly specific 16S rRNA probes
-
Kalmbach S., Manz W., and Szewzyk U. Isolation of new bacterial species from drinking water biofilms and proof of their in situ dominance with highly specific 16S rRNA probes. Applied and Environmental Microbiology 63 (1997) 4164-4170
-
(1997)
Applied and Environmental Microbiology
, vol.63
, pp. 4164-4170
-
-
Kalmbach, S.1
Manz, W.2
Szewzyk, U.3
-
19
-
-
0032953641
-
Aquabacterium gen. nov., with description of Aquabacterium citratiphilum sp. nov., Aquabacterium parvum sp. nov. and Aquabacterium commune sp. nov., three in situ dominant bacterial species from the Berlin drinking water system
-
Kalmbach S., Manz W., Wecke J., and Szewzyk U. Aquabacterium gen. nov., with description of Aquabacterium citratiphilum sp. nov., Aquabacterium parvum sp. nov. and Aquabacterium commune sp. nov., three in situ dominant bacterial species from the Berlin drinking water system. International Journal of Systematic and Evolutionary Microbiology 49 (1999) 769-777
-
(1999)
International Journal of Systematic and Evolutionary Microbiology
, vol.49
, pp. 769-777
-
-
Kalmbach, S.1
Manz, W.2
Wecke, J.3
Szewzyk, U.4
-
20
-
-
0037401010
-
Molecular methods for the assessment of bacterial viability
-
Keer J.T., and Birch L. Molecular methods for the assessment of bacterial viability. Journal of Microbiological Methods 53 (2003) 175-183
-
(2003)
Journal of Microbiological Methods
, vol.53
, pp. 175-183
-
-
Keer, J.T.1
Birch, L.2
-
21
-
-
33645212312
-
Identification of active bacterial communities in a model drinking water biofilm using 16S rRNA-based clone libraries
-
Keinanen-Toivola M.M., Revetta R.P., and Santo Domingo J.W. Identification of active bacterial communities in a model drinking water biofilm using 16S rRNA-based clone libraries. FEMS Microbiology Letters 257 (2006) 182-188
-
(2006)
FEMS Microbiology Letters
, vol.257
, pp. 182-188
-
-
Keinanen-Toivola, M.M.1
Revetta, R.P.2
Santo Domingo, J.W.3
-
22
-
-
0001857117
-
16S/23S rRNA sequencing
-
Stackebrandt E., and Goodfellow M. (Eds), Wiley, New York
-
Lane D.J. 16S/23S rRNA sequencing. In: Stackebrandt E., and Goodfellow M. (Eds). Nucleic Acid Techniques in Bacterial Systematics (1991), Wiley, New York 115-175
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
23
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar, Buchner A., Lai T., Steppi S., Jobb G., Förster W., Brettske I., Gerber S., Ginhart A.W., Gross O., Grumann S., Hermann S., Jost R., König A., Liss T., Lübmann R., May M., Nonhoff B., Reichel B., Strehlow R., Stamatakis A., Stuckmann N., Vilbig A., Lenke M., Ludwig T., Bode A., and Schleifer K.-H. ARB: a software environment for sequence data. Nucleic Acids Research 32 (2004) 1363-1371
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar6
Buchner, A.7
Lai, T.8
Steppi, S.9
Jobb, G.10
Förster, W.11
Brettske, I.12
Gerber, S.13
Ginhart, A.W.14
Gross, O.15
Grumann, S.16
Hermann, S.17
Jost, R.18
König, A.19
Liss, T.20
Lübmann, R.21
May, M.22
Nonhoff, B.23
Reichel, B.24
Strehlow, R.25
Stamatakis, A.26
Stuckmann, N.27
Vilbig, A.28
Lenke, M.29
Ludwig, T.30
Bode, A.31
Schleifer, K.-H.32
more..
-
24
-
-
29144436638
-
Identification of bacteria in biofilm and bulk water samples from a nonchlorinated model drinking water distribution system: detection of a large nitrite-oxidizing population associated with Nitrospira spp
-
Martiny A.C., Albrechtsen H.-J., Arvin E., and Molin S. Identification of bacteria in biofilm and bulk water samples from a nonchlorinated model drinking water distribution system: detection of a large nitrite-oxidizing population associated with Nitrospira spp. Applied and Environmental Microbiology 71 (2005) 8611-8617
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 8611-8617
-
-
Martiny, A.C.1
Albrechtsen, H.-J.2
Arvin, E.3
Molin, S.4
-
25
-
-
0031792579
-
rRNA stability in heat-killed and UV-irradiated enterotoxigenic Staphylococcus aureus and Escherichia coli O157:H7
-
McKillip J.L., Jaykus L.A., and Drake M. rRNA stability in heat-killed and UV-irradiated enterotoxigenic Staphylococcus aureus and Escherichia coli O157:H7. Applied and Environmental Microbiology 64 (1998) 4264-4268
-
(1998)
Applied and Environmental Microbiology
, vol.64
, pp. 4264-4268
-
-
McKillip, J.L.1
Jaykus, L.A.2
Drake, M.3
-
26
-
-
44749092050
-
Presence and activity of ammonia-oxidising bacteria detected amongst the overall bacterial diversity along a physico-chemical gradient of a nitrifying wastewater treatment plant
-
Milner M.G., Curtis T.P., and Davenport R.J. Presence and activity of ammonia-oxidising bacteria detected amongst the overall bacterial diversity along a physico-chemical gradient of a nitrifying wastewater treatment plant. Water Research 42 (2008) 2863-2872
-
(2008)
Water Research
, vol.42
, pp. 2863-2872
-
-
Milner, M.G.1
Curtis, T.P.2
Davenport, R.J.3
-
27
-
-
0032846469
-
Identification of novel bacterial lineages as active members of microbial populations in a freshwater sediment using a rapid RNA extraction procedure and RT-PCR
-
Miskin I.P., Farrimond P., and Head I.M. Identification of novel bacterial lineages as active members of microbial populations in a freshwater sediment using a rapid RNA extraction procedure and RT-PCR. Microbiology 145 (1999) 1977-1987
-
(1999)
Microbiology
, vol.145
, pp. 1977-1987
-
-
Miskin, I.P.1
Farrimond, P.2
Head, I.M.3
-
28
-
-
1542301476
-
Distribution and culturability of the uncultivated 'AGG58 cluster' of the Bacteroidetes phylum in aquatic environments
-
O'Sullivan L.A., Fuller K.E., Thomas E.M., Turley C.M., Fry J.C., and Weightman A.J. Distribution and culturability of the uncultivated 'AGG58 cluster' of the Bacteroidetes phylum in aquatic environments. FEMS Microbiology Ecology 47 (2004) 359-370
-
(2004)
FEMS Microbiology Ecology
, vol.47
, pp. 359-370
-
-
O'Sullivan, L.A.1
Fuller, K.E.2
Thomas, E.M.3
Turley, C.M.4
Fry, J.C.5
Weightman, A.J.6
-
29
-
-
42149101067
-
Population dynamics of ammonia-oxidizing bacteria in an aerated submerged biofilm reactor for micropolluted raw water pretreatment
-
Qin Y.Y., Zhang X.W., Ren H.Q., Li D.T., and Yang H. Population dynamics of ammonia-oxidizing bacteria in an aerated submerged biofilm reactor for micropolluted raw water pretreatment. Applied Microbiology and Biotechnology 79 (2008) 135-145
-
(2008)
Applied Microbiology and Biotechnology
, vol.79
, pp. 135-145
-
-
Qin, Y.Y.1
Zhang, X.W.2
Ren, H.Q.3
Li, D.T.4
Yang, H.5
-
30
-
-
0021971186
-
A new medium for the enumeration and subculture of bacteria from potable water
-
Reasoner D., and Geldreich E. A new medium for the enumeration and subculture of bacteria from potable water. Applied and Environmental Microbiology 49 (1985) 1-7
-
(1985)
Applied and Environmental Microbiology
, vol.49
, pp. 1-7
-
-
Reasoner, D.1
Geldreich, E.2
-
31
-
-
0037209949
-
Diversity of nitrifying bacteria in full-scale chloraminated distribution systems
-
Regan J.M., Harrington G.W., Baribeau H., Leon R.D., and Noguera D.R. Diversity of nitrifying bacteria in full-scale chloraminated distribution systems. Water Research 37 (2003) 197-205
-
(2003)
Water Research
, vol.37
, pp. 197-205
-
-
Regan, J.M.1
Harrington, G.W.2
Baribeau, H.3
Leon, R.D.4
Noguera, D.R.5
-
32
-
-
0002308688
-
Enhanced survival of the cyanobacterium Oscillatoria terebriformis in darkness under anaerobic conditions
-
Richardson L.L., and Castenholz R.W. Enhanced survival of the cyanobacterium Oscillatoria terebriformis in darkness under anaerobic conditions. Applied Environment Microbiology 53 (1987) 2151-2158
-
(1987)
Applied Environment Microbiology
, vol.53
, pp. 2151-2158
-
-
Richardson, L.L.1
Castenholz, R.W.2
-
33
-
-
0037268467
-
Molecular characterization of bacteria inhabiting a water distribution system simulator
-
Santo Domingo J.W., Meckes M.C., Simpson J.M., Sloss B., and Reasoner D.J. Molecular characterization of bacteria inhabiting a water distribution system simulator. Water Science and Technology 47 (2003) 149-154
-
(2003)
Water Science and Technology
, vol.47
, pp. 149-154
-
-
Santo Domingo, J.W.1
Meckes, M.C.2
Simpson, J.M.3
Sloss, B.4
Reasoner, D.J.5
-
34
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
Schloss P.D., and Handelsman J. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Applied and Environmental Microbiology 71 (2005) 1501-1506
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
35
-
-
33750078701
-
Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community member ships and structures
-
Schloss P.D., and Handelsman J. Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community member ships and structures. Applied and Environmental Microbiology 72 (2006) 6773-6779
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 6773-6779
-
-
Schloss, P.D.1
Handelsman, J.2
-
36
-
-
0034919134
-
Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses
-
Takeuchi M., Hamana K., and Hiraishi A. Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. International Journal of Systematic and Evolutionary Microbiology 51 (2001) 1405-1417
-
(2001)
International Journal of Systematic and Evolutionary Microbiology
, vol.51
, pp. 1405-1417
-
-
Takeuchi, M.1
Hamana, K.2
Hiraishi, A.3
-
37
-
-
34548293679
-
Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q., Garrity G.M., Tiedje J.M., and Cole J.R. Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology 73 (2007) 5261-5267
-
(2007)
Applied and Environmental Microbiology
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
38
-
-
0141592803
-
Growth of Escherichia coli in model distribution system biofilms exposed to hypochlorous acid or monochloramine
-
Williams M.M., and Braun-Howland E.B. Growth of Escherichia coli in model distribution system biofilms exposed to hypochlorous acid or monochloramine. Applied and Environmental Microbiology 69 (2003) 5463-5471
-
(2003)
Applied and Environmental Microbiology
, vol.69
, pp. 5463-5471
-
-
Williams, M.M.1
Braun-Howland, E.B.2
-
39
-
-
2342501844
-
Phylogenetic diversity of drinking water bacteria in a distribution system simulator
-
Williams M.M., Santo Domingo J.W., Meckes M.C., Kelty C.A., and Rochon H.S. Phylogenetic diversity of drinking water bacteria in a distribution system simulator. Journal of Applied Microbiology 96 (2004) 954-964
-
(2004)
Journal of Applied Microbiology
, vol.96
, pp. 954-964
-
-
Williams, M.M.1
Santo Domingo, J.W.2
Meckes, M.C.3
Kelty, C.A.4
Rochon, H.S.5
|