메뉴 건너뛰기




Volumn 65, Issue 1, 2015, Pages 200-210

Genome-wide identification of long noncoding RNAs in rat models of cardiovascular and renal disease

Author keywords

Blood Pressure; Inbred Dahl; Inbred Shr; Rats; Rna Untranslated; Transcriptome

Indexed keywords

LONG UNTRANSLATED RNA; MESSENGER RNA; TRANSCRIPTOME;

EID: 84919451802     PISSN: 0194911X     EISSN: 15244563     Source Type: Journal    
DOI: 10.1161/HYPERTENSIONAHA.114.04498     Document Type: Article
Times cited : (50)

References (53)
  • 1
    • 84880870139 scopus 로고    scopus 로고
    • Lessons from functional analysis of genome-wide association studies
    • Sur I, Tuupanen S, Whitington T, Aaltonen LA, Taipale J. Lessons from functional analysis of genome-wide association studies. Cancer Res. 2013;73:4180-4184.
    • (2013) Cancer Res , vol.73 , pp. 4180-4184
    • Sur, I.1    Tuupanen, S.2    Whitington, T.3    Aaltonen, L.A.4    Taipale, J.5
  • 2
    • 84899014380 scopus 로고    scopus 로고
    • Disease genetics: Insights into missing heritability
    • Koch L. Disease genetics: insights into missing heritability. Nat Rev Genet. 2014;15:218.
    • (2014) Nat Rev Genet , vol.15 , pp. 218
    • Koch, L.1
  • 3
    • 84908318087 scopus 로고
    • Genetic variation in the noncoding genome: Involvement of micro-RNAs and long noncoding RNAs in disease
    • Hrdlickova B, de Almeida RC, Borek Z, Withoff S. Genetic variation in the noncoding genome: Involvement of micro-RNAs and long noncoding RNAs in disease. Biochim Biophys Acta. 2014;1842:1910-1922.
    • (1842) Biochim Biophys Acta , vol.2014 , pp. 1910-1922
    • Hrdlickova, B.1    De Almeida, R.C.2    Borek, Z.3    Withoff, S.4
  • 7
    • 84881176167 scopus 로고    scopus 로고
    • Genome sequencing reveals loci under artificial selection that underlie disease phenotypes in the laboratory rat
    • Atanur SS, Diaz AG, Maratou K, et al. Genome sequencing reveals loci under artificial selection that underlie disease phenotypes in the laboratory rat. Cell. 2013;154:691-703.
    • (2013) Cell , vol.154 , pp. 691-703
    • Atanur, S.S.1    Diaz, A.G.2    Maratou, K.3
  • 8
    • 85026338471 scopus 로고    scopus 로고
    • Epigenetic modifications: Basic mechanisms and role in cardiovascular disease (2013 Grover Conference series)
    • Loscalzo J, Handy DE. Epigenetic modifications: basic mechanisms and role in cardiovascular disease (2013 Grover Conference series). Pulm Circ. 2014;4:169-174.
    • (2014) Pulm Circ , vol.4 , pp. 169-174
    • Loscalzo, J.1    Handy, D.E.2
  • 9
    • 79957463780 scopus 로고    scopus 로고
    • Epigenetic modifications: Basic mechanisms and role in cardiovascular disease
    • Handy DE, Castro R, Loscalzo J. Epigenetic modifications: basic mechanisms and role in cardiovascular disease. Circulation. 2011;123:2145-2156.
    • (2011) Circulation , vol.123 , pp. 2145-2156
    • Handy, D.E.1    Castro, R.2    Loscalzo, J.3
  • 11
    • 84867745758 scopus 로고    scopus 로고
    • Genetic biomarkers of hypertension and future challenges integrating epigenomics
    • El Shamieh S, Visvikis-Siest S. Genetic biomarkers of hypertension and future challenges integrating epigenomics. Clin Chim Acta. 2012;414:259-265.
    • (2012) Clin Chim Acta , vol.414 , pp. 259-265
    • El Shamieh, S.1    Visvikis-Siest, S.2
  • 12
    • 33847035925 scopus 로고    scopus 로고
    • Unraveling hypertension: Epigenomics comes of age
    • Fornage M. Unraveling hypertension: epigenomics comes of age. Pharmacogenomics. 2007;8:125-128.
    • (2007) Pharmacogenomics , vol.8 , pp. 125-128
    • Fornage, M.1
  • 13
    • 33744940566 scopus 로고    scopus 로고
    • Genomics and epigenomics of hypertension
    • Fornage M, Doris PA. Genomics and epigenomics of hypertension. Curr Opin Mol Ther. 2006;8:206-214.
    • (2006) Curr Opin Mol Ther , vol.8 , pp. 206-214
    • Fornage, M.1    Doris, P.A.2
  • 14
    • 84858729145 scopus 로고    scopus 로고
    • Translational study of microRNAs and its application in kidney disease and hypertension research
    • Kriegel AJ, Mladinov D, Liang M. Translational study of microRNAs and its application in kidney disease and hypertension research. Clin Sci (Lond). 2012;122:439-447.
    • (2012) Clin Sci (Lond) , vol.122 , pp. 439-447
    • Kriegel, A.J.1    Mladinov, D.2    Liang, M.3
  • 15
    • 84878988418 scopus 로고    scopus 로고
    • Visiting noncodarnia
    • Perkel JM. Visiting noncodarnia. Biotechniques. 2013;54:301, 303- 301, 304.
    • (2013) Biotechniques , vol.54 , pp. 301303-301304
    • Perkel, J.M.1
  • 16
    • 84894532371 scopus 로고    scopus 로고
    • On the classification of long non-coding RNAs
    • Ma L, Bajic VB, Zhang Z. On the classification of long non-coding RNAs. RNA Biol. 2013;10:925-933.
    • (2013) RNA Biol , vol.10 , pp. 925-933
    • Ma, L.1    Bajic, V.B.2    Zhang, Z.3
  • 17
    • 79957840356 scopus 로고    scopus 로고
    • Long noncoding RNAs and human disease
    • Wapinski O, Chang HY. Long noncoding RNAs and human disease. Trends Cell Biol. 2011;21:354-361.
    • (2011) Trends Cell Biol , vol.21 , pp. 354-361
    • Wapinski, O.1    Chang, H.Y.2
  • 18
    • 23044437498 scopus 로고    scopus 로고
    • RNA meets chromatin
    • Bernstein E, Allis CD. RNA meets chromatin. Genes Dev. 2005;19:1635-1655.
    • (2005) Genes Dev , vol.19 , pp. 1635-1655
    • Bernstein, E.1    Allis, C.D.2
  • 19
    • 68349090253 scopus 로고    scopus 로고
    • Regulation of the mammalian epigenome by long noncoding RNAs
    • Whitehead J, Pandey GK, Kanduri C. Regulation of the mammalian epigenome by long noncoding RNAs. Biochim Biophys Acta. 2009;1790:936-947.
    • (2009) Biochim Biophys Acta , vol.1790 , pp. 936-947
    • Whitehead, J.1    Pandey, G.K.2    Kanduri, C.3
  • 20
    • 80053045739 scopus 로고    scopus 로고
    • Molecular mechanisms of long noncoding RNAs
    • Wang KC, Chang HY. Molecular mechanisms of long noncoding RNAs. Mol Cell. 2011;43:904-914.
    • (2011) Mol Cell , vol.43 , pp. 904-914
    • Wang, K.C.1    Chang, H.Y.2
  • 21
    • 84908606605 scopus 로고    scopus 로고
    • Expanding the functional role of long noncoding RNAs [published online ahead of print August 8, 2014]
    • Accessed October 29 2014
    • Johnsson P, Morris KV. Expanding the functional role of long noncoding RNAs [published online ahead of print August 8, 2014]. Cell Res. doi: 10.1038/cr.2014.104. http://www.nature.com/cr/journal/vaop/ncurrent/full/cr2014104a.html. Accessed October 29, 2014.
    • Cell Res
    • Johnsson, P.1    Morris, K.V.2
  • 22
    • 84897128298 scopus 로고    scopus 로고
    • The noncoding RNA revolution-trashing old rules to forge new ones
    • Cech TR, Steitz JA. The noncoding RNA revolution-trashing old rules to forge new ones. Cell. 2014;157:77-94.
    • (2014) Cell , vol.157 , pp. 77-94
    • Cech, T.R.1    Steitz, J.A.2
  • 24
    • 82655168824 scopus 로고    scopus 로고
    • A lincRNA switch for embryonic stem cell fate
    • Yang L, Lin C, Rosenfeld MG. A lincRNA switch for embryonic stem cell fate. Cell Res. 2011;21:1646-1648.
    • (2011) Cell Res , vol.21 , pp. 1646-1648
    • Yang, L.1    Lin, C.2    Rosenfeld, M.G.3
  • 25
    • 80054990557 scopus 로고    scopus 로고
    • New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes
    • Parker BJ, Moltke I, Roth A, Washietl S, Wen J, Kellis M, Breaker R, Pedersen JS. New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes. Genome Res. 2011;21:1929-1943.
    • (2011) Genome Res , vol.21 , pp. 1929-1943
    • Parker, B.J.1    Moltke, I.2    Roth, A.3    Washietl, S.4    Wen, J.5    Kellis, M.6    Breaker, R.7    Pedersen, J.S.8
  • 26
    • 80052869283 scopus 로고    scopus 로고
    • LincRNAs act in the circuitry controlling pluripotency and differentiation
    • Guttman M, Donaghey J, Carey BW, et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature. 2011;477: 295-300.
    • (2011) Nature , vol.477 , pp. 295-300
    • Guttman, M.1    Donaghey, J.2    Carey, B.W.3
  • 28
    • 62249133709 scopus 로고    scopus 로고
    • Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
    • Guttman M, Amit I, Garber M, et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature. 2009;458:223-227.
    • (2009) Nature , vol.458 , pp. 223-227
    • Guttman, M.1    Amit, I.2    Garber, M.3
  • 29
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 2011;25:1915-1927.
    • (2011) Genes Dev , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6    Rinn, J.L.7
  • 30
    • 77951118936 scopus 로고    scopus 로고
    • Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
    • Gupta RA, Shah N, Wang KC, et al. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature. 2010;464:1071-1076.
    • (2010) Nature , vol.464 , pp. 1071-1076
    • Gupta, R.A.1    Shah, N.2    Wang, K.C.3
  • 33
    • 84865727393 scopus 로고    scopus 로고
    • The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
    • Derrien T, Johnson R, Bussotti G, et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res. 2012;22:1775-1789.
    • (2012) Genome Res , vol.22 , pp. 1775-1789
    • Derrien, T.1    Johnson, R.2    Bussotti, G.3
  • 35
    • 84455206362 scopus 로고    scopus 로고
    • Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
    • Ulitsky I, Shkumatava A, Jan CH, Sive H, Bartel DP. Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Cell. 2011;147:1537-1550.
    • (2011) Cell , vol.147 , pp. 1537-1550
    • Ulitsky, I.1    Shkumatava, A.2    Jan, C.H.3    Sive, H.4    Bartel, D.P.5
  • 36
    • 84879987789 scopus 로고    scopus 로고
    • LincRNAs: Genomics, evolution, and mechanisms
    • Ulitsky I, Bartel DP. lincRNAs: genomics, evolution, and mechanisms. Cell. 2013;154:26-46.
    • (2013) Cell , vol.154 , pp. 26-46
    • Ulitsky, I.1    Bartel, D.P.2
  • 38
    • 0033979807 scopus 로고    scopus 로고
    • Genetic analysis of inherited hypertension in the rat
    • Rapp JP. Genetic analysis of inherited hypertension in the rat. Physiol Rev. 2000;80:135-172.
    • (2000) Physiol Rev , vol.80 , pp. 135-172
    • Rapp, J.P.1
  • 39
    • 0037408417 scopus 로고    scopus 로고
    • Time-course genetic analysis of albuminuria in Dahl salt-sensitive rats on low-salt diet
    • Garrett MR, Dene H, Rapp JP. Time-course genetic analysis of albuminuria in Dahl salt-sensitive rats on low-salt diet. J Am Soc Nephrol. 2003;14:1175-1187.
    • (2003) J Am Soc Nephrol , vol.14 , pp. 1175-1187
    • Garrett, M.R.1    Dene, H.2    Rapp, J.P.3
  • 40
    • 0034729610 scopus 로고    scopus 로고
    • Blood pressure QTL that differentiate Dahl salt-sensitive and spontaneously hypertensive rats
    • Garrett MR, Saad Y, Dene H, Rapp JP. Blood pressure QTL that differentiate Dahl salt-sensitive and spontaneously hypertensive rats. Physiol Genomics. 2000;3:33-38.
    • (2000) Physiol Genomics , vol.3 , pp. 33-38
    • Garrett, M.R.1    Saad, Y.2    Dene, H.3    Rapp, J.P.4
  • 41
    • 77949890531 scopus 로고    scopus 로고
    • Integrating human and rodent data to identify the genetic factors involved in chronic kidney disease
    • Garrett MR, Pezzolesi MG, Korstanje R. Integrating human and rodent data to identify the genetic factors involved in chronic kidney disease. J Am Soc Nephrol. 2010;21:398-405.
    • (2010) J Am Soc Nephrol , vol.21 , pp. 398-405
    • Garrett, M.R.1    Pezzolesi, M.G.2    Korstanje, R.3
  • 44
    • 77950510305 scopus 로고    scopus 로고
    • Mineralocorticoid receptors, salt-sensitive hypertension, and metabolic syndrome
    • Fujita T. Mineralocorticoid receptors, salt-sensitive hypertension, and metabolic syndrome. Hypertension. 2010;55:813-818.
    • (2010) Hypertension , vol.55 , pp. 813-818
    • Fujita, T.1
  • 45
    • 3042576712 scopus 로고    scopus 로고
    • Facets of the metabolic syndrome in Dahl hypertensive rats
    • Channa ML, Somova L, Nadar A. Facets of the metabolic syndrome in Dahl hypertensive rats. Cardiovasc J S Afr. 2004;15:61-63.
    • (2004) Cardiovasc J S Afr , vol.15 , pp. 61-63
    • Channa, M.L.1    Somova, L.2    Nadar, A.3
  • 46
    • 0032789180 scopus 로고    scopus 로고
    • Glucose metabolism and insulin sensitivity in Dahl hypertensive rats
    • Somova L, Channa ML. Glucose metabolism and insulin sensitivity in Dahl hypertensive rats. Methods Find Exp Clin Pharmacol. 1999;21:421-425.
    • (1999) Methods Find Exp Clin Pharmacol , vol.21 , pp. 421-425
    • Somova, L.1    Channa, M.L.2
  • 47
    • 33747114313 scopus 로고    scopus 로고
    • Mechanisms of insulin resistance in hypertensive rats
    • Shimamoto K, Ura N. Mechanisms of insulin resistance in hypertensive rats. Clin Exp Hypertens. 2006;28:543-552.
    • (2006) Clin Exp Hypertens , vol.28 , pp. 543-552
    • Shimamoto, K.1    Ura, N.2
  • 48
    • 0036120952 scopus 로고    scopus 로고
    • Genetics of Cd36 and the hypertension metabolic syndrome
    • Pravenec M, Kurtz TW. Genetics of Cd36 and the hypertension metabolic syndrome. Semin Nephrol. 2002;22:148-153.
    • (2002) Semin Nephrol , vol.22 , pp. 148-153
    • Pravenec, M.1    Kurtz, T.W.2
  • 49
    • 0032693236 scopus 로고    scopus 로고
    • Genetics of Cd36 and the clustering of multiple cardiovascular risk factors in spontaneous hypertension
    • Pravenec M, Zidek V, Simakova M, et al. Genetics of Cd36 and the clustering of multiple cardiovascular risk factors in spontaneous hypertension. J Clin Invest. 1999;103:1651-1657.
    • (1999) J Clin Invest , vol.103 , pp. 1651-1657
    • Pravenec, M.1    Zidek, V.2    Simakova, M.3
  • 50
    • 0030900338 scopus 로고    scopus 로고
    • Quantitative trait loci for cellular defects in glucose and fatty acid metabolism in hypertensive rats
    • Aitman TJ, Gotoda T, Evans AL, et al. Quantitative trait loci for cellular defects in glucose and fatty acid metabolism in hypertensive rats. Nat Genet. 1997;16:197-201.
    • (1997) Nat Genet , vol.16 , pp. 197-201
    • Aitman, T.J.1    Gotoda, T.2    Evans, A.L.3
  • 51
    • 80855140431 scopus 로고    scopus 로고
    • Integrated genomic approaches to identification of candidate genes underlying metabolic and cardiovascular phenotypes in the spontaneously hypertensive rat
    • Morrissey C, Grieve IC, Heinig M, Atanur S, Petretto E, Pravenec M, Hubner N, Aitman TJ. Integrated genomic approaches to identification of candidate genes underlying metabolic and cardiovascular phenotypes in the spontaneously hypertensive rat. Physiol Genomics. 2011;43:1207-1218.
    • (2011) Physiol Genomics , vol.43 , pp. 1207-1218
    • Morrissey, C.1    Grieve, I.C.2    Heinig, M.3    Atanur, S.4    Petretto, E.5    Pravenec, M.6    Hubner, N.7    Aitman, T.J.8
  • 52
    • 84897846868 scopus 로고    scopus 로고
    • Genetic susceptibility to type 2 diabetes and obesity: Follow-up of findings from genome-wide association studies
    • Basile KJ, Johnson ME, Xia Q, Grant SF. Genetic susceptibility to type 2 diabetes and obesity: follow-up of findings from genome-wide association studies. Int J Endocrinol. 2014;2014:769671.
    • (2014) Int J Endocrinol , vol.2014 , pp. 769671
    • Basile, K.J.1    Johnson, M.E.2    Xia, Q.3    Grant, S.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.