메뉴 건너뛰기




Volumn 133, Issue 11, 2014, Pages 1383-1394

Differentially co-expressed genes in postmortem prefrontal cortex of individuals with alcohol use disorders: influence on alcohol metabolism-related pathways

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL DEHYDROGENASE; ALCOHOL DEHYDROGENASE 2; ALCOHOL DEHYDROGENASE 7A1; ALCOHOL DEHYDROGENASE 9A1; TRANSCRIPTOME; UNCLASSIFIED DRUG; ALCOHOL;

EID: 84919449221     PISSN: 03406717     EISSN: 14321203     Source Type: Journal    
DOI: 10.1007/s00439-014-1473-x     Document Type: Article
Times cited : (33)

References (41)
  • 1
    • 77956141721 scopus 로고    scopus 로고
    • Alcohol and the prefrontal cortex
    • PID: 20813246, COI: 1:CAS:528:DC%2BC3cXhsFKnsr3N
    • Abernathy K, Chandler LJ, Woodward JJ (2010) Alcohol and the prefrontal cortex. Int Rev Neurobiol 91:289–320
    • (2010) Int Rev Neurobiol , vol.91 , pp. 289-320
    • Abernathy, K.1    Chandler, L.J.2    Woodward, J.J.3
  • 2
    • 85061424653 scopus 로고    scopus 로고
    • Identifying genetic variation for alcohol dependence
    • PID: 23134043
    • Agrawal A, Bierut LJ (2012) Identifying genetic variation for alcohol dependence. Alcohol Res 34:274–281
    • (2012) Alcohol Res , vol.34 , pp. 274-281
    • Agrawal, A.1    Bierut, L.J.2
  • 5
    • 84888300066 scopus 로고    scopus 로고
    • Two gene co-expression modules differentiate psychotics and controls
    • PID: 23147385, COI: 1:CAS:528:DC%2BC3sXhvVWnsb7N
    • Chen C, Cheng L, Grennan K, Pibiri F, Zhang C, Badner JA, Members of the Bipolar Disorder Genome Study C, Gershon ES, Liu C (2013) Two gene co-expression modules differentiate psychotics and controls. Mol Psychiatry 18:1308–1314
    • (2013) Mol Psychiatry , vol.18 , pp. 1308-1314
    • Chen, C.1    Cheng, L.2    Grennan, K.3    Pibiri, F.4    Zhang, C.5    Badner, J.A.6    Gershon, E.S.7    Liu, C.8
  • 6
    • 34249876887 scopus 로고    scopus 로고
    • Chronic ethanol exposure causes mitochondrial dysfunction and oxidative stress in immature central nervous system neurons
    • PID: 17431646, COI: 1:CAS:528:DC%2BD2sXls1SgsLo%3D
    • Chu J, Tong M, de la Monte SM (2007) Chronic ethanol exposure causes mitochondrial dysfunction and oxidative stress in immature central nervous system neurons. Acta Neuropathol 113:659–673
    • (2007) Acta Neuropathol , vol.113 , pp. 659-673
    • Chu, J.1    Tong, M.2    de la Monte, S.M.3
  • 7
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • COI: 1:CAS:528:DC%2BD1cXhsFCkurnI
    • da Huang W, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4:44–57
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 8
    • 46249088370 scopus 로고    scopus 로고
    • Lumi: a pipeline for processing Illumina microarray
    • PID: 18467348, COI: 1:CAS:528:DC%2BD1cXnvV2rtLg%3D
    • Du P, Kibbe WA, Lin SM (2008) Lumi: a pipeline for processing Illumina microarray. Bioinformatics 24:1547–1548
    • (2008) Bioinformatics , vol.24 , pp. 1547-1548
    • Du, P.1    Kibbe, W.A.2    Lin, S.M.3
  • 9
    • 34247847741 scopus 로고    scopus 로고
    • The genetics of alcoholism: identifying specific genes through family studies
    • PID: 16961766
    • Edenberg HJ, Foroud T (2006) The genetics of alcoholism: identifying specific genes through family studies. Addict Biol 11:386–396
    • (2006) Addict Biol , vol.11 , pp. 386-396
    • Edenberg, H.J.1    Foroud, T.2
  • 10
    • 0030570833 scopus 로고    scopus 로고
    • Inhibition of the Kupffer cell inflammatory response by acute ethanol: NF-kappa B activation and subsequent cytokine production
    • PID: 8769106, COI: 1:CAS:528:DyaK28Xlslaqurg%3D
    • Fox ES, Cantrell CH, Leingang KA (1996) Inhibition of the Kupffer cell inflammatory response by acute ethanol: NF-kappa B activation and subsequent cytokine production. Biochem Biophys Res Commun 225:134–140
    • (1996) Biochem Biophys Res Commun , vol.225 , pp. 134-140
    • Fox, E.S.1    Cantrell, C.H.2    Leingang, K.A.3
  • 12
    • 84866449583 scopus 로고    scopus 로고
    • EnrichNet: network-based gene set enrichment analysis
    • PID: 22962466, COI: 1:CAS:528:DC%2BC38Xhtlanu77L
    • Glaab E, Baudot A, Krasnogor N, Schneider R, Valencia A (2012) EnrichNet: network-based gene set enrichment analysis. Bioinformatics 28:i451–i457
    • (2012) Bioinformatics , vol.28 , pp. i451-i457
    • Glaab, E.1    Baudot, A.2    Krasnogor, N.3    Schneider, R.4    Valencia, A.5
  • 13
    • 0023107032 scopus 로고
    • The role of essential fatty acids in alcohol dependence and tissue damage
    • PID: 3551662, COI: 1:CAS:528:DyaL2sXhsFSrsrk%3D
    • Glen I, Skinner F, Glen E, MacDonell L (1987) The role of essential fatty acids in alcohol dependence and tissue damage. Alcohol Clin Exp Res 11:37–41
    • (1987) Alcohol Clin Exp Res , vol.11 , pp. 37-41
    • Glen, I.1    Skinner, F.2    Glen, E.3    MacDonell, L.4
  • 14
    • 2942522762 scopus 로고    scopus 로고
    • The 12-month prevalence and trends in DSM-IV alcohol abuse and dependence: United States, 1991–1992 and 2001–2002
    • PID: 15194200
    • Grant BF, Dawson DA, Stinson FS, Chou SP, Dufour MC, Pickering RP (2004) The 12-month prevalence and trends in DSM-IV alcohol abuse and dependence: United States, 1991–1992 and 2001–2002. Drug Alcohol Depend 74:223–234
    • (2004) Drug Alcohol Depend , vol.74 , pp. 223-234
    • Grant, B.F.1    Dawson, D.A.2    Stinson, F.S.3    Chou, S.P.4    Dufour, M.C.5    Pickering, R.P.6
  • 15
    • 0036083422 scopus 로고    scopus 로고
    • Alcohol and mitochondria: a dysfunctional relationship
    • PID: 12055609, COI: 1:CAS:528:DC%2BD38Xlt12gsb8%3D
    • Hoek JB, Cahill A, Pastorino JG (2002) Alcohol and mitochondria: a dysfunctional relationship. Gastroenterology 122:2049–2063
    • (2002) Gastroenterology , vol.122 , pp. 2049-2063
    • Hoek, J.B.1    Cahill, A.2    Pastorino, J.G.3
  • 16
    • 33845432928 scopus 로고    scopus 로고
    • Adjusting batch effects in microarray expression data using empirical Bayes methods
    • PID: 16632515
    • Johnson WE, Li C, Rabinovic A (2007) Adjusting batch effects in microarray expression data using empirical Bayes methods. Biostatistics 8:118–127
    • (2007) Biostatistics , vol.8 , pp. 118-127
    • Johnson, W.E.1    Li, C.2    Rabinovic, A.3
  • 17
    • 41449085571 scopus 로고    scopus 로고
    • Eigengene networks for studying the relationships between co-expression modules
    • PID: 18031580
    • Langfelder P, Horvath S (2007) Eigengene networks for studying the relationships between co-expression modules. BMC Syst Biol 1:54
    • (2007) BMC Syst Biol , vol.1 , pp. 54
    • Langfelder, P.1    Horvath, S.2
  • 18
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: an R package for weighted correlation network analysis
    • Langfelder P, Horvath S (2008) WGCNA: an R package for weighted correlation network analysis. C Bioinform 9:559
    • (2008) C Bioinform , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 19
    • 0034541793 scopus 로고    scopus 로고
    • Gene expression in human alcoholism: microarray analysis of frontal cortex
    • PID: 11141048, COI: 1:STN:280:DC%2BD3M7ksFWgtw%3D%3D
    • Lewohl JM, Wang L, Miles MF, Zhang L, Dodd PR, Harris RA (2000) Gene expression in human alcoholism: microarray analysis of frontal cortex. Alcohol Clin Exp Res 24:1873–1882
    • (2000) Alcohol Clin Exp Res , vol.24 , pp. 1873-1882
    • Lewohl, J.M.1    Wang, L.2    Miles, M.F.3    Zhang, L.4    Dodd, P.R.5    Harris, R.A.6
  • 20
    • 39149111937 scopus 로고    scopus 로고
    • Model-based variance-stabilizing transformation for Illumina microarray data
    • PID: 18178591
    • Lin SM, Du P, Huber W, Kibbe WA (2008) Model-based variance-stabilizing transformation for Illumina microarray data. Nucleic Acids Res 36:e11
    • (2008) Nucleic Acids Res , vol.36 , pp. e11
    • Lin, S.M.1    Du, P.2    Huber, W.3    Kibbe, W.A.4
  • 21
    • 4444356798 scopus 로고    scopus 로고
    • Gene expression profiling of individual cases reveals consistent transcriptional changes in alcoholic human brain
    • PID: 15312160, COI: 1:CAS:528:DC%2BD2cXns1Sru74%3D
    • Liu J, Lewohl JM, Dodd PR, Randall PK, Harris RA, Mayfield RD (2004) Gene expression profiling of individual cases reveals consistent transcriptional changes in alcoholic human brain. J Neurochem 90:1050–1058
    • (2004) J Neurochem , vol.90 , pp. 1050-1058
    • Liu, J.1    Lewohl, J.M.2    Dodd, P.R.3    Randall, P.K.4    Harris, R.A.5    Mayfield, R.D.6
  • 22
    • 33745214876 scopus 로고    scopus 로고
    • Patterns of gene expression in the frontal cortex discriminate alcoholic from nonalcoholic individuals
    • PID: 16292326, COI: 1:CAS:528:DC%2BD28Xls1Kitrg%3D
    • Liu J, Lewohl JM, Harris RA, Iyer VR, Dodd PR, Randall PK, Mayfield RD (2006) Patterns of gene expression in the frontal cortex discriminate alcoholic from nonalcoholic individuals. Neuropsychopharmacology 31:1574–1582
    • (2006) Neuropsychopharmacology , vol.31 , pp. 1574-1582
    • Liu, J.1    Lewohl, J.M.2    Harris, R.A.3    Iyer, V.R.4    Dodd, P.R.5    Randall, P.K.6    Mayfield, R.D.7
  • 23
    • 79956086384 scopus 로고    scopus 로고
    • Differential expression of 14-3-3 isoforms in human alcoholic brain
    • PID: 21332526, COI: 1:CAS:528:DC%2BC3MXoslOmu7s%3D
    • MacKay RK, Colson NJ, Dodd PR, Lewohl JM (2011) Differential expression of 14-3-3 isoforms in human alcoholic brain. Alcohol Clin Exp Res 35:1041–1049
    • (2011) Alcohol Clin Exp Res , vol.35 , pp. 1041-1049
    • MacKay, R.K.1    Colson, N.J.2    Dodd, P.R.3    Lewohl, J.M.4
  • 24
    • 78650909074 scopus 로고    scopus 로고
    • Cellular and mitochondrial effects of alcohol consumption
    • PID: 21318009, COI: 1:CAS:528:DC%2BC3MXisFSntQ%3D%3D
    • Manzo-Avalos S, Saavedra-Molina A (2010) Cellular and mitochondrial effects of alcohol consumption. Int J Environ Res Public Health 7:4281–4304
    • (2010) Int J Environ Res Public Health , vol.7 , pp. 4281-4304
    • Manzo-Avalos, S.1    Saavedra-Molina, A.2
  • 25
    • 0036315907 scopus 로고    scopus 로고
    • Patterns of gene expression are altered in the frontal and motor cortices of human alcoholics
    • PID: 12065639, COI: 1:CAS:528:DC%2BD38XktFCntLg%3D
    • Mayfield RD, Lewohl JM, Dodd PR, Herlihy A, Liu J, Harris RA (2002) Patterns of gene expression are altered in the frontal and motor cortices of human alcoholics. J Neurochem 81:802–813
    • (2002) J Neurochem , vol.81 , pp. 802-813
    • Mayfield, R.D.1    Lewohl, J.M.2    Dodd, P.R.3    Herlihy, A.4    Liu, J.5    Harris, R.A.6
  • 26
    • 0034928713 scopus 로고    scopus 로고
    • An integrative theory of prefrontal cortex function
    • PID: 11283309, COI: 1:CAS:528:DC%2BD3MXls1Shsro%3D
    • Miller EK, Cohen JD (2001) An integrative theory of prefrontal cortex function. Annu Rev Neurosci 24:167–202
    • (2001) Annu Rev Neurosci , vol.24 , pp. 167-202
    • Miller, E.K.1    Cohen, J.D.2
  • 28
    • 84880958291 scopus 로고    scopus 로고
    • Protein phosphatases but not reactive oxygen species play functional role in acute amphetamine-mediated dopamine release
    • PID: 23625176, COI: 1:CAS:528:DC%2BC3sXhtF2msb7J
    • Paszti-Gere E, Jakus J (2013) Protein phosphatases but not reactive oxygen species play functional role in acute amphetamine-mediated dopamine release. Cell Biochem Biophys 66:831–841
    • (2013) Cell Biochem Biophys , vol.66 , pp. 831-841
    • Paszti-Gere, E.1    Jakus, J.2
  • 30
    • 84863011005 scopus 로고    scopus 로고
    • Gene coexpression networks in human brain identify epigenetic modifications in alcohol dependence
    • PID: 22302827, COI: 1:CAS:528:DC%2BC38XitFOltLs%3D
    • Ponomarev I, Wang S, Zhang L, Harris RA, Mayfield RD (2012) Gene coexpression networks in human brain identify epigenetic modifications in alcohol dependence. J Neurosci 32:1884–1897
    • (2012) J Neurosci , vol.32 , pp. 1884-1897
    • Ponomarev, I.1    Wang, S.2    Zhang, L.3    Harris, R.A.4    Mayfield, R.D.5
  • 32
    • 59249097875 scopus 로고    scopus 로고
    • Alcohol-use disorders
    • PID: 19168210
    • Schuckit MA (2009) Alcohol-use disorders. Lancet 373:492–501
    • (2009) Lancet , vol.373 , pp. 492-501
    • Schuckit, M.A.1
  • 33
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • PID: 12883005, COI: 1:CAS:528:DC%2BD3sXmtlyktbY%3D
    • Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci USA 100:9440
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 9440
    • Storey, J.D.1    Tibshirani, R.2
  • 35
    • 77950669072 scopus 로고    scopus 로고
    • Coexpression network analysis of neural tissue reveals perturbations in developmental processes in schizophrenia
    • PID: 20197298, COI: 1:CAS:528:DC%2BC3cXkvFKhtrg%3D
    • Torkamani A, Dean B, Schork NJ, Thomas EA (2010) Coexpression network analysis of neural tissue reveals perturbations in developmental processes in schizophrenia. Genome Res 20:403–412
    • (2010) Genome Res , vol.20 , pp. 403-412
    • Torkamani, A.1    Dean, B.2    Schork, N.J.3    Thomas, E.A.4
  • 36
    • 84888367236 scopus 로고    scopus 로고
    • Widespread sex differences in gene expression and splicing in the adult human brain
    • PID: 24264146
    • Trabzuni D, Ramasamy A, Imran S, Walker R, Smith C, Weale ME, Hardy J, Ryten M, North American Brain Expression C (2013) Widespread sex differences in gene expression and splicing in the adult human brain. Nat Commun 4:2771
    • (2013) Nat Commun , vol.4 , pp. 2771
    • Trabzuni, D.1    Ramasamy, A.2    Imran, S.3    Walker, R.4    Smith, C.5    Weale, M.E.6    Hardy, J.7    Ryten, M.8
  • 37
    • 84862640021 scopus 로고    scopus 로고
    • Beyond the dopamine receptor: regulation and roles of serine/threonine protein phosphatases
    • PID: 21904525, COI: 1:CAS:528:DC%2BC38XjvV2msQ%3D%3D
    • Walaas SI, Hemmings HC Jr, Greengard P, Nairn AC (2011) Beyond the dopamine receptor: regulation and roles of serine/threonine protein phosphatases. Front Neuroanat 5:50
    • (2011) Front Neuroanat , vol.5 , pp. 50
    • Walaas, S.I.1    Hemmings, H.C.2    Greengard, P.3    Nairn, A.C.4
  • 38
    • 84894056067 scopus 로고    scopus 로고
    • Sex-biased methylome and transcriptome in human prefrontal cortex
    • PID: 24163133, COI: 1:CAS:528:DC%2BC2cXitFWitL4%3D
    • Xu H, Wang F, Liu Y, Yu Y, Gelernter J, Zhang H (2014) Sex-biased methylome and transcriptome in human prefrontal cortex. Hum Mol Genet 23:1260–1270
    • (2014) Hum Mol Genet , vol.23 , pp. 1260-1270
    • Xu, H.1    Wang, F.2    Liu, Y.3    Yu, Y.4    Gelernter, J.5    Zhang, H.6
  • 39
    • 0037047284 scopus 로고    scopus 로고
    • Ethanol induces fatty acid synthesis pathways by activation of sterol regulatory element-binding protein (SREBP)
    • PID: 12036955, COI: 1:CAS:528:DC%2BD38XmsVKjtrY%3D
    • You M, Fischer M, Deeg MA, Crabb DW (2002) Ethanol induces fatty acid synthesis pathways by activation of sterol regulatory element-binding protein (SREBP). J Biol Chem 277:29342–29347
    • (2002) J Biol Chem , vol.277 , pp. 29342-29347
    • You, M.1    Fischer, M.2    Deeg, M.A.3    Crabb, D.W.4
  • 40
    • 34347252306 scopus 로고    scopus 로고
    • Overview: how is alcohol metabolized by the body?
    • PID: 17718403
    • Zakhari S (2006) Overview: how is alcohol metabolized by the body? Alcohol Res Health 29:245–254
    • (2006) Alcohol Res Health , vol.29 , pp. 245-254
    • Zakhari, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.