메뉴 건너뛰기




Volumn 9, Issue 12, 2014, Pages

Succession and replacement of bacterial populations in the caecum of egg laying hens over their whole life

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

EID: 84918818701     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0115142     Document Type: Article
Times cited : (161)

References (38)
  • 1
    • 67651151152 scopus 로고    scopus 로고
    • The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age
    • Mariat D, Firmesse O, Levenez F, Guimarəes V, Sokol H, et al. (2009) The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age. BMC Microbiol 9: 123.
    • (2009) BMC Microbiol , vol.9 , pp. 123
    • Mariat, D.1    Firmesse, O.2    Levenez, F.3    Guimarəes, V.4    Sokol, H.5
  • 2
    • 79952757721 scopus 로고    scopus 로고
    • Composition, variability, and temporal stability of the intestinal microbiota of the elderly
    • Claesson MJ, Cusack S, O'Sullivan O, Greene-Diniz R, de Weerd H, et al. (2011) Composition, variability, and temporal stability of the intestinal microbiota of the elderly. Proc Natl Acad Sci U S A 108 Suppl 1: 4586-91.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 4586-4591
    • Claesson, M.J.1    Cusack, S.2    O'Sullivan, O.3    Greene-Diniz, R.4    De Weerd, H.5
  • 3
    • 84864722033 scopus 로고    scopus 로고
    • Gut microbiota composition correlates with diet and health in the elderly
    • Claesson MJ, Jeffery IB, Conde S, Power SE, O'Connor EM, et al. (2012) Gut microbiota composition correlates with diet and health in the elderly. Nature 488: 178-84.
    • (2012) Nature , vol.488 , pp. 178-184
    • Claesson, M.J.1    Jeffery, I.B.2    Conde, S.3    Power, S.E.4    O'Connor, E.M.5
  • 4
    • 75349111298 scopus 로고    scopus 로고
    • Gut microbiota: Changes throughout the lifespan from infancy to elderly
    • O'Toole PW, Claesson MJ (2010) Gut microbiota: Changes throughout the lifespan from infancy to elderly. Int Dairy J 20: 281-91.
    • (2010) Int Dairy J , vol.20 , pp. 281-291
    • O'Toole, P.W.1    Claesson, M.J.2
  • 5
    • 80053618114 scopus 로고    scopus 로고
    • Linking long-term dietary patterns with gut microbial enterotypes
    • Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, et al. (2011) Linking long-term dietary patterns with gut microbial enterotypes. Science 334: 105-8.
    • (2011) Science , vol.334 , pp. 105-108
    • Wu, G.D.1    Chen, J.2    Hoffmann, C.3    Bittinger, K.4    Chen, Y.Y.5
  • 6
    • 0242489005 scopus 로고    scopus 로고
    • Diversity and succession of the intestinal bacterial community of the maturing broiler chicken
    • Lu J, Idris U, Harmon B, Hofacre C, Maurer JJ, et al. (2003) Diversity and succession of the intestinal bacterial community of the maturing broiler chicken. Appl Environ Microbiol 69: 6816-24.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 6816-6824
    • Lu, J.1    Idris, U.2    Harmon, B.3    Hofacre, C.4    Maurer, J.J.5
  • 7
    • 84896696508 scopus 로고    scopus 로고
    • Highly variable microbiota development in the chicken gastrointestinal tract
    • Stanley D, Geier MS, Hughes RJ, Denman SE, Moore RJ (2013) Highly variable microbiota development in the chicken gastrointestinal tract. PLoS One 8: e84290.
    • (2013) PLoS One , vol.8 , pp. e84290
    • Stanley, D.1    Geier, M.S.2    Hughes, R.J.3    Denman, S.E.4    Moore, R.J.5
  • 8
    • 0343051989 scopus 로고    scopus 로고
    • Prevention of Salmonella typhimurium caecal colonisation by different preparations for competitive exclusion
    • Hoszowski A, Truszczynski M (1997) Prevention of Salmonella typhimurium caecal colonisation by different preparations for competitive exclusion. Comp Immunol Microbiol Infect Dis 20: 111-7.
    • (1997) Comp Immunol Microbiol Infect Dis , vol.20 , pp. 111-117
    • Hoszowski, A.1    Truszczynski, M.2
  • 9
    • 0032769580 scopus 로고    scopus 로고
    • Combination of vaccination and competitive exclusion to prevent Salmonella colonization in chickens: Experimental studies
    • Methner U, Barrow PA, Berndt A, Steinbach G (1999) Combination of vaccination and competitive exclusion to prevent Salmonella colonization in chickens: experimental studies. Int J Food Microbiol 49: 35-42.
    • (1999) Int J Food Microbiol , vol.49 , pp. 35-42
    • Methner, U.1    Barrow, P.A.2    Berndt, A.3    Steinbach, G.4
  • 10
    • 0030933360 scopus 로고    scopus 로고
    • Comparative study of the protective effect against Salmonella colonisation in newly hatched SPF chickens using live, attenuated Salmonella vaccine strains, wild-type Salmonella strains or a competitive exclusion product
    • Methner U, Barrow PA, Martin G, Meyer H (1997) Comparative study of the protective effect against Salmonella colonisation in newly hatched SPF chickens using live, attenuated Salmonella vaccine strains, wild-type Salmonella strains or a competitive exclusion product. Int J Food Microbiol 35: 223-30.
    • (1997) Int J Food Microbiol , vol.35 , pp. 223-230
    • Methner, U.1    Barrow, P.A.2    Martin, G.3    Meyer, H.4
  • 11
    • 78149317654 scopus 로고    scopus 로고
    • The microbiota mediates pathogen clearance from the gut lumen after non-typhoidal Salmonella diarrhea
    • Endt K, Stecher B, Chaffron S, Slack E, Tchitchek N, et al. (2010) The microbiota mediates pathogen clearance from the gut lumen after non-typhoidal Salmonella diarrhea. PLoS Pathog 6: e1001097.
    • (2010) PLoS Pathog , vol.6 , pp. e1001097
    • Endt, K.1    Stecher, B.2    Chaffron, S.3    Slack, E.4    Tchitchek, N.5
  • 12
    • 0036136459 scopus 로고    scopus 로고
    • 16S rRNA-based analysis of microbiota from the cecum of broiler chickens
    • Zhu XY, Zhong T, Pandya Y, Joerger RD (2002) 16S rRNA-based analysis of microbiota from the cecum of broiler chickens. Appl Environ Microbiol 68: 124-37.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 124-137
    • Zhu, X.Y.1    Zhong, T.2    Pandya, Y.3    Joerger, R.D.4
  • 13
    • 63249131326 scopus 로고    scopus 로고
    • Evaluation of the bacterial diversity in cecal contents of laying hens fed various molting diets by using bacterial tag-encoded FLX amplicon pyrosequencing
    • Callaway TR, Dowd SE, Wolcott RD, Sun Y, McReynolds JL, et al. (2009) Evaluation of the bacterial diversity in cecal contents of laying hens fed various molting diets by using bacterial tag-encoded FLX amplicon pyrosequencing. Poult Sci 88: 298-302.
    • (2009) Poult Sci , vol.88 , pp. 298-302
    • Callaway, T.R.1    Dowd, S.E.2    Wolcott, R.D.3    Sun, Y.4    McReynolds, J.L.5
  • 14
    • 80051856129 scopus 로고    scopus 로고
    • The influence of the cage system and colonisation of Salmonella Enteritidis on the microbial gut flora of laying hens studied by T-RFLP and 454 pyrosequencing
    • Nordentoft S, Molbak L, Bjerrum L, De Vylder J, Van Immerseel F, et al. (2011) The influence of the cage system and colonisation of Salmonella Enteritidis on the microbial gut flora of laying hens studied by T-RFLP and 454 pyrosequencing. BMC Microbiol 11: 187.
    • (2011) BMC Microbiol , vol.11 , pp. 187
    • Nordentoft, S.1    Molbak, L.2    Bjerrum, L.3    De Vylder, J.4    Van Immerseel, F.5
  • 15
    • 78049253926 scopus 로고    scopus 로고
    • Interrelations between the microbiotas in the litter and in the intestines of commercial broiler chickens
    • Cressman MD, Yu Z, Nelson MC, Moeller SJ, Lilburn MS, et al. (2010) Interrelations between the microbiotas in the litter and in the intestines of commercial broiler chickens. Appl Environ Microbiol 76: 6572-82.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 6572-6582
    • Cressman, M.D.1    Yu, Z.2    Nelson, M.C.3    Moeller, S.J.4    Lilburn, M.S.5
  • 16
    • 81155128154 scopus 로고    scopus 로고
    • Modulations of the chicken cecal microbiome and metagenome in response to anticoccidial and growth promoter treatment
    • Danzeisen JL, Kim HB, Isaacson RE, Tu ZJ, Johnson TJ (2011) Modulations of the chicken cecal microbiome and metagenome in response to anticoccidial and growth promoter treatment. PLoS One 6: e27949.
    • (2011) PLoS One , vol.6 , pp. e27949
    • Danzeisen, J.L.1    Kim, H.B.2    Isaacson, R.E.3    Tu, Z.J.4    Johnson, T.J.5
  • 17
    • 77149171151 scopus 로고    scopus 로고
    • Exposure of different bacterial inocula to newborn chicken affects gut microbiota development and ileum gene expression
    • Yin Y, Lei F, Zhu L, Li S, Wu Z, et al. (2010) Exposure of different bacterial inocula to newborn chicken affects gut microbiota development and ileum gene expression. ISME J 4: 367-76.
    • (2010) ISME J , vol.4 , pp. 367-376
    • Yin, Y.1    Lei, F.2    Zhu, L.3    Li, S.4    Wu, Z.5
  • 18
    • 84864613327 scopus 로고    scopus 로고
    • Changes in the caecal microflora of chickens following Clostridium perfringens challenge to induce necrotic enteritis
    • Stanley D, Keyburn AL, Denman SE, Moore RJ (2012) Changes in the caecal microflora of chickens following Clostridium perfringens challenge to induce necrotic enteritis. Vet Microbiol 159: 155-62.
    • (2012) Vet Microbiol , vol.159 , pp. 155-162
    • Stanley, D.1    Keyburn, A.L.2    Denman, S.E.3    Moore, R.J.4
  • 19
    • 84879898249 scopus 로고    scopus 로고
    • Quantitative genetic background of the host influences gut microbiomes in chickens
    • Zhao L, Wang G, Siegel P, He C, Wang H, et al. (2013) Quantitative genetic background of the host influences gut microbiomes in chickens. Sci Rep 3: 1163.
    • (2013) Sci Rep , vol.3 , pp. 1163
    • Zhao, L.1    Wang, G.2    Siegel, P.3    He, C.4    Wang, H.5
  • 20
    • 84880097532 scopus 로고    scopus 로고
    • Influence of Salmonella enterica serovar Enteritidis infection on the composition of chicken cecal microbiota
    • Videnska P, Sisak F, Havlickova H, Faldynova M, Rychlik I (2013) Influence of Salmonella enterica serovar Enteritidis infection on the composition of chicken cecal microbiota. BMC Vet Res 9: 140.
    • (2013) BMC Vet Res , vol.9 , pp. 140
    • Videnska, P.1    Sisak, F.2    Havlickova, H.3    Faldynova, M.4    Rychlik, I.5
  • 21
    • 84908042727 scopus 로고    scopus 로고
    • Characterization of egg laying hen and broiler fecal microbiota in poultry farms in Croatia, Czech Republic, Hungary and Slovenia
    • Videnska P, Rahman MM, Faldynova M, Babak V, Elsheimer Matulova M, et al. (2014) Characterization of egg laying hen and broiler fecal microbiota in poultry farms in Croatia, Czech Republic, Hungary and Slovenia. PLoS One 9: e110076.
    • (2014) PLoS One , vol.9 , pp. e110076
    • Videnska, P.1    Rahman, M.M.2    Faldynova, M.3    Babak, V.4    Elsheimer Matulova, M.5
  • 23
    • 0019940133 scopus 로고
    • Utilization of nutrients by isolated epithelial cells of the rat colon
    • Roediger WE (1982) Utilization of nutrients by isolated epithelial cells of the rat colon. Gastroenterology 83: 424-9.
    • (1982) Gastroenterology , vol.83 , pp. 424-429
    • Roediger, W.E.1
  • 24
    • 0028126050 scopus 로고
    • Effects of short chain fatty acids on gut morphology and function
    • Scheppach W (1994) Effects of short chain fatty acids on gut morphology and function. Gut 35: S35-S38.
    • (1994) Gut , vol.35 , pp. S35-S38
    • Scheppach, W.1
  • 25
    • 0034104703 scopus 로고    scopus 로고
    • Butyrate and glucose metabolism by colonocytes in experimental colitis in mice
    • Ahmad MS, Krishnan S, Ramakrishna BS, Mathan M, Pulimood AB, et al. (2000) Butyrate and glucose metabolism by colonocytes in experimental colitis in mice. Gut 46: 493-9.
    • (2000) Gut , vol.46 , pp. 493-499
    • Ahmad, M.S.1    Krishnan, S.2    Ramakrishna, B.S.3    Mathan, M.4    Pulimood, A.B.5
  • 26
    • 22144439446 scopus 로고    scopus 로고
    • pH and peptide supply can radically alter bacterial populations and short-chain fatty acid ratios within microbial communities from the human colon
    • Walker AW, Duncan SH, McWilliam Leitch EC, Child MW, Flint HJ (2005) pH and peptide supply can radically alter bacterial populations and short-chain fatty acid ratios within microbial communities from the human colon. Appl Environ Microbiol 71: 3692-700.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 3692-3700
    • Walker, A.W.1    Duncan, S.H.2    McWilliam Leitch, E.C.3    Child, M.W.4    Flint, H.J.5
  • 27
    • 33847233644 scopus 로고    scopus 로고
    • Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces
    • Duncan SH, Belenguer A, Holtrop G, Johnstone AM, Flint HJ, et al. (2007) Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces. Appl Environ Microbiol 73: 1073-8.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 1073-1078
    • Duncan, S.H.1    Belenguer, A.2    Holtrop, G.3    Johnstone, A.M.4    Flint, H.J.5
  • 28
    • 33947413117 scopus 로고    scopus 로고
    • Development of a semiquantitative degenerate real-time pcr-based assay for estimation of numbers of butyryl-coenzyme A (CoA) CoA transferase genes in complex bacterial samples
    • Louis P, Flint HJ (2007) Development of a semiquantitative degenerate real-time pcr-based assay for estimation of numbers of butyryl-coenzyme A (CoA) CoA transferase genes in complex bacterial samples. Appl Environ Microbiol 73: 2009-12.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 2009-2012
    • Louis, P.1    Flint, H.J.2
  • 29
    • 84877913270 scopus 로고    scopus 로고
    • Bacteroides thetaiotaomicron and Faecalibacterium prausnitzii influence the production of mucus glycans and the development of goblet cells in the colonic epithelium of a gnotobiotic model rodent
    • Wrzosek L, Miquel S, Noordine ML, Bouet S, Joncquel Chevalier-Curt M, et al. (2013) Bacteroides thetaiotaomicron and Faecalibacterium prausnitzii influence the production of mucus glycans and the development of goblet cells in the colonic epithelium of a gnotobiotic model rodent. BMC Biol 11: 61.
    • (2013) BMC Biol , vol.11 , pp. 61
    • Wrzosek, L.1    Miquel, S.2    Noordine, M.L.3    Bouet, S.4    Joncquel Chevalier-Curt, M.5
  • 30
    • 84884590677 scopus 로고    scopus 로고
    • In vitro characterization of the impact of selected dietary fibers on fecal microbiota composition and short chain fatty acid production
    • Yang J, Martinez I, Walter J, Keshavarzian A, Rose DJ (2013) In vitro characterization of the impact of selected dietary fibers on fecal microbiota composition and short chain fatty acid production. Anaerobe 23: 74-81.
    • (2013) Anaerobe , vol.23 , pp. 74-81
    • Yang, J.1    Martinez, I.2    Walter, J.3    Keshavarzian, A.4    Rose, D.J.5
  • 31
    • 79960418118 scopus 로고    scopus 로고
    • Sulfatases and a radical S-adenosyl-Lmethionine (AdoMet) enzyme are key for mucosal foraging and fitness of the prominent human gut symbiont, Bacteroides thetaiotaomicron
    • Benjdia A, Martens EC, Gordon JI, Berteau O (2011) Sulfatases and a radical S-adenosyl-Lmethionine (AdoMet) enzyme are key for mucosal foraging and fitness of the prominent human gut symbiont, Bacteroides thetaiotaomicron. J Biol Chem 286: 25973-82.
    • (2011) J Biol Chem , vol.286 , pp. 25973-25982
    • Benjdia, A.1    Martens, E.C.2    Gordon, J.I.3    Berteau, O.4
  • 33
    • 1242296822 scopus 로고    scopus 로고
    • Aberrant expansion of segmented filamentous bacteria in IgA-deficient gut
    • Suzuki K, Meek B, Doi Y, Muramatsu M, Chiba T, et al. (2004) Aberrant expansion of segmented filamentous bacteria in IgA-deficient gut. Proc Natl Acad Sci U S A 101: 1981-6.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 1981-1986
    • Suzuki, K.1    Meek, B.2    Doi, Y.3    Muramatsu, M.4    Chiba, T.5
  • 34
    • 84877844744 scopus 로고    scopus 로고
    • Chicken innate immune response to oral infection with Salmonella enterica serovar Enteritidis
    • Matulova M, Varmuzova K, Sisak F, Havlickova H, Babak V, et al. (2013) Chicken innate immune response to oral infection with Salmonella enterica serovar Enteritidis. Vet Res 44: 37.
    • (2013) Vet Res , vol.44 , pp. 37
    • Matulova, M.1    Varmuzova, K.2    Sisak, F.3    Havlickova, H.4    Babak, V.5
  • 35
    • 84874782497 scopus 로고    scopus 로고
    • Chicken faecal microbiota and disturbances induced by single or repeated therapy with tetracycline and streptomycin
    • Videnska P, Faldynova M, Juricova H, Babak V, Sisak F, et al. (2013) Chicken faecal microbiota and disturbances induced by single or repeated therapy with tetracycline and streptomycin. BMC Vet Res 9: 30.
    • (2013) BMC Vet Res , vol.9 , pp. 30
    • Videnska, P.1    Faldynova, M.2    Juricova, H.3    Babak, V.4    Sisak, F.5
  • 36
    • 84871905995 scopus 로고    scopus 로고
    • Influence of Salmonella enterica serovar Enteritidis infection on the development of the cecum microbiota in newly hatched chicks
    • Juricova H, Videnska P, Lukac M, Faldynova M, Babak V, et al. (2013) Influence of Salmonella enterica serovar Enteritidis infection on the development of the cecum microbiota in newly hatched chicks. Appl Environ Microbiol 79: 745-7.
    • (2013) Appl Environ Microbiol , vol.79 , pp. 745-747
    • Juricova, H.1    Videnska, P.2    Lukac, M.3    Faldynova, M.4    Babak, V.5
  • 38
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228-35.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.