-
1
-
-
0016157155
-
Isolation, culture characteristics, and identification of anaerobic bacteria from the chicken cecum
-
Salanitro JP, Fairchilds IG, Zgornicki YD (1974) Isolation, culture characteristics, and identification of anaerobic bacteria from the chicken cecum. Appl Microbiol 27: 678-687.
-
(1974)
Appl Microbiol
, vol.27
, pp. 678-687
-
-
Salanitro, J.P.1
Fairchilds, I.G.2
Zgornicki, Y.D.3
-
2
-
-
3242717878
-
Characteristics of the gastrointestinal microbial communities, with special reference to the chicken
-
Apajalahti J, Kettunen A, Graham H (2004) Characteristics of the gastrointestinal microbial communities, with special reference to the chicken. World's Poultry Science Journal 60: 223-232.
-
(2004)
World's Poultry Science Journal
, vol.60
, pp. 223-232
-
-
Apajalahti, J.1
Kettunen, A.2
Graham, H.3
-
3
-
-
33947378258
-
Quantitative analysis of the intestinal bacterial community in one- to three-week-old commercially reared broiler chickens fed conventional or antibiotic-free vegetable-based diets
-
DOI 10.1111/j.1365-2672.2006.03153.x
-
Wise MG, Siragusa GR (2007) Quantitative analysis of the intestinal bacterial community in one- to three-week-old commercially reared broiler chickens fed conventional or antibiotic-free vegetable-based diets. J Appl Microbiol 102: 1138-1149. (Pubitemid 46457478)
-
(2007)
Journal of Applied Microbiology
, vol.102
, Issue.4
, pp. 1138-1149
-
-
Wise, M.G.1
Siragusa, G.R.2
-
4
-
-
79959397353
-
Immune response of chicken gut to natural colonization by gut microflora and to Salmonella enterica serovar enteritidis infection
-
Crhanova M, Hradecka H, Faldynova M, Matulova M, Havlickova H, et al. (2011) Immune response of chicken gut to natural colonization by gut microflora and to Salmonella enterica serovar enteritidis infection. Infect Immun 79: 2755-2763.
-
(2011)
Infect Immun
, vol.79
, pp. 2755-2763
-
-
Crhanova, M.1
Hradecka, H.2
Faldynova, M.3
Matulova, M.4
Havlickova, H.5
-
5
-
-
0036136459
-
16S rRNA-based analysis of microbiota from the cecum of broiler chickens
-
DOI 10.1128/AEM.68.1.124-137.2002
-
Zhu XY, Zhong T, Pandya Y, Joerger RD (2002) 16S rRNA-based analysis of microbiota from the cecum of broiler chickens. Appl Environ Microbiol 68: 124-137. (Pubitemid 34031171)
-
(2002)
Applied and Environmental Microbiology
, vol.68
, Issue.1
, pp. 124-137
-
-
Zhu, X.Y.1
Zhong, T.2
Pandya, Y.3
Joerger, R.D.4
-
6
-
-
78049253926
-
Interrelations between the microbiotas in the litter and in the intestines of commercial broiler chickens
-
Cressman MD, Yu Z, Nelson MC, Moeller SJ, Lilburn MS, et al. (2010) Interrelations between the microbiotas in the litter and in the intestines of commercial broiler chickens. Appl Environ Microbiol 76: 6572-6582.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 6572-6582
-
-
Cressman, M.D.1
Yu, Z.2
Nelson, M.C.3
Moeller, S.J.4
Lilburn, M.S.5
-
7
-
-
33845678685
-
16S rRNA gene-based analysis of mucosa-associated bacterial community and phylogeny in the chicken gastrointestinal tracts: From crops to ceca
-
DOI 10.1111/j.1574-6941.2006.00193.x
-
Gong J, Si W, Forster RJ, Huang R, Yu H, et al. (2007) 16S rRNA gene-based analysis of mucosa-associated bacterial community and phylogeny in the chicken gastrointestinal tracts: from crops to ceca. FEMS Microbiol Ecol 59: 147-157. (Pubitemid 44952417)
-
(2007)
FEMS Microbiology Ecology
, vol.59
, Issue.1
, pp. 147-157
-
-
Gong, J.1
Si, W.2
Forster, R.J.3
Huang, R.4
Yu, H.5
Yin, Y.6
Yang, C.7
Han, Y.8
-
8
-
-
84861134838
-
Abrupt temporal fluctuations in the chicken fecal microbiota are explained by its gastrointestinal origin
-
Sekelja M, Rud I, Knutsen SH, Denstadli V, Westereng B, et al. (2012) Abrupt temporal fluctuations in the chicken fecal microbiota are explained by its gastrointestinal origin. Appl Environ Microbiol 78: 2941-2948.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 2941-2948
-
-
Sekelja, M.1
Rud, I.2
Knutsen, S.H.3
Denstadli, V.4
Westereng, B.5
-
9
-
-
84871051885
-
Intestinal microbiota associated with differential feed conversion efficiency in chickens
-
Stanley D, Denman SE, Hughes RJ, Geier MS, Crowley TM, et al. (2012) Intestinal microbiota associated with differential feed conversion efficiency in chickens. Appl Microbiol Biotechnol 96: 1361-1369.
-
(2012)
Appl Microbiol Biotechnol
, vol.96
, pp. 1361-1369
-
-
Stanley, D.1
Denman, S.E.2
Hughes, R.J.3
Geier, M.S.4
Crowley, T.M.5
-
10
-
-
81155128154
-
Modulations of the chicken cecal microbiome and metagenome in response to anticoccidial and growth promoter treatment
-
Danzeisen JL, Kim HB, Isaacson RE, Tu ZJ, Johnson TJ (2011) Modulations of the chicken cecal microbiome and metagenome in response to anticoccidial and growth promoter treatment. PLoS One 6: e27949.
-
(2011)
PLoS One
, vol.6
-
-
Danzeisen, J.L.1
Kim, H.B.2
Isaacson, R.E.3
Tu, Z.J.4
Johnson, T.J.5
-
11
-
-
63249131326
-
Evaluation of the bacterial diversity in cecal contents of laying hens fed various molting diets by using bacterial tag-encoded FLX amplicon pyrosequencing
-
Callaway TR, Dowd SE, Wolcott RD, Sun Y, McReynolds JL, et al. (2009) Evaluation of the bacterial diversity in cecal contents of laying hens fed various molting diets by using bacterial tag-encoded FLX amplicon pyrosequencing. Poult Sci 88: 298-302.
-
(2009)
Poult Sci
, vol.88
, pp. 298-302
-
-
Callaway, T.R.1
Dowd, S.E.2
Wolcott, R.D.3
Sun, Y.4
McReynolds, J.L.5
-
12
-
-
84864613327
-
Changes in the caecal microflora of chickens following Clostridium perfringens challenge to induce necrotic enteritis
-
Stanley D, Keyburn AL, Denman SE, Moore RJ (2012) Changes in the caecal microflora of chickens following Clostridium perfringens challenge to induce necrotic enteritis. Veterinary Microbiology 159: 155-162.
-
(2012)
Veterinary Microbiology
, vol.159
, pp. 155-162
-
-
Stanley, D.1
Keyburn, A.L.2
Denman, S.E.3
Moore, R.J.4
-
13
-
-
2442510059
-
Improved extraction of PCR-quality community DNA from digesta and fecal samples
-
Yu Z, Morrison M (2004) Improved extraction of PCR-quality community DNA from digesta and fecal samples. Biotechniques 36: 808-812. (Pubitemid 38620199)
-
(2004)
BioTechniques
, vol.36
, Issue.5
, pp. 808-812
-
-
Yu, Z.1
Morrison, M.2
-
15
-
-
15244351941
-
Characterisation of the microbial diversity in a pig manure storage pit using small subunit rDNA sequence analysis
-
DOI 10.1016/j.femsec.2004.11.016
-
Snell-Castro R, Godon JJ, Delgenes JP, Dabert P (2005) Characterisation of the microbial diversity in a pig manure storage pit using small subunit rDNA sequence analysis. FEMS Microbiol Ecol 52: 229-242. (Pubitemid 40386997)
-
(2005)
FEMS Microbiology Ecology
, vol.52
, Issue.2
, pp. 229-242
-
-
Snell-Castro, R.1
Godon, J.-J.2
Delgenes, J.-P.3
Dabert, P.4
-
16
-
-
38749091304
-
Pyrobayes: An improved base caller for SNP discovery in pyrosequences
-
DOI 10.1038/nmeth.1172, PII NMETH.1172
-
Quinlan AR, Stewart DA, Stromberg MP, Marth GT (2008) Pyrobayes: an improved base caller for SNP discovery in pyrosequences. Nat Methods 5: 179-181. (Pubitemid 351181747)
-
(2008)
Nature Methods
, vol.5
, Issue.2
, pp. 179-181
-
-
Quinlan, A.R.1
Stewart, D.A.2
Stromberg, M.P.3
Marth, G.T.4
-
17
-
-
29144504177
-
At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies
-
DOI 10.1128/AEM.71.12.7724-7736.2005
-
Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ (2005) At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies. Appl Environ Microbiol 71: 7724-7736. (Pubitemid 41803890)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.12
, pp. 7724-7736
-
-
Ashelford, K.E.1
Chuzhanova, N.A.2
Fry, J.C.3
Jones, A.J.4
Weightman, A.J.5
-
18
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, et al. (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7: 335-336.
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
-
20
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
21
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27: 2194-2200.
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
22
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DOI 10.1128/AEM.03006-05
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, et al. (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 72: 5069-5072. (Pubitemid 44078840)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.7
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
23
-
-
35648991375
-
EzTaxon: A web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences
-
DOI 10.1099/ijs.0.64915-0
-
Chun J, Lee JH, Jung Y, Kim M, Kim S, et al. (2007) EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57: 2259-2261. (Pubitemid 350031697)
-
(2007)
International Journal of Systematic and Evolutionary Microbiology
, vol.57
, Issue.10
, pp. 2259-2261
-
-
Chun, J.1
Lee, J.-H.2
Jung, Y.3
Kim, M.4
Kim, S.5
Kim, B.K.6
Lim, Y.-W.7
-
25
-
-
84877091328
-
Analyses of the stability and core taxonomic memberships of the human microbiome
-
Li K, Bihan M, Methé BA (2013) Analyses of the stability and core taxonomic memberships of the human microbiome. PLoS One 8: e63139.
-
(2013)
PLoS One
, vol.8
-
-
Li, K.1
Bihan, M.2
Methé, B.A.3
-
26
-
-
77954730922
-
Animal-to-animal variation in fecal microbial diversity among beef cattle
-
Durso LM, Harhay GP, Smith TPL, Bono JL, DeSantis TZ, et al. (2010) Animal-to-animal variation in fecal microbial diversity among beef cattle. Appl Environ Microbiol 76: 4858-4862.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 4858-4862
-
-
Durso, L.M.1
Harhay, G.P.2
Smith, T.P.L.3
Bono, J.L.4
DeSantis, T.Z.5
-
27
-
-
84866066519
-
Early life: Gut microbiota and immune development in infancy
-
Martin R, Nauta AJ, Ben Amor K, Knippels LM, Knol J, et al. (2010) Early life: gut microbiota and immune development in infancy. Benef Microbes 1: 367-382.
-
(2010)
Benef Microbes
, vol.1
, pp. 367-382
-
-
Martin, R.1
Nauta, A.J.2
Ben Amor, K.3
Knippels, L.M.4
Knol, J.5
-
28
-
-
53649106826
-
Antibiotic-induced perturbations of the intestinal microbiota alter host susceptibility to enteric infection
-
Sekirov I, Tam NM, Jogova M, Robertson ML, Li Y, et al. (2008) Antibiotic-induced perturbations of the intestinal microbiota alter host susceptibility to enteric infection. Infect Immun 76: 4726-4736.
-
(2008)
Infect Immun
, vol.76
, pp. 4726-4736
-
-
Sekirov, I.1
Tam, N.M.2
Jogova, M.3
Robertson, M.L.4
Li, Y.5
-
29
-
-
78650216494
-
Effect of Bacillus-based direct-fed microbials on Eimeria maxima infection in broiler chickens
-
Lee KW, Lillehoj HS, Jang SI, Li G, Lee SH, et al. (2010) Effect of Bacillus-based direct-fed microbials on Eimeria maxima infection in broiler chickens. Comp Immunol Microbiol Infect Dis 33: e105-110.
-
(2010)
Comp Immunol Microbiol Infect Dis
, vol.33
-
-
Lee, K.W.1
Lillehoj, H.S.2
Jang, S.I.3
Li, G.4
Lee, S.H.5
-
30
-
-
77955386857
-
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
-
Dominguez-Bello MG, Costello EK, Contreras M, Magris M, Hidalgo G, et al. (2010) Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc Natl Acad Sci U S A 107: 11971-11975.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 11971-11975
-
-
Dominguez-Bello, M.G.1
Costello, E.K.2
Contreras, M.3
Magris, M.4
Hidalgo, G.5
-
31
-
-
33644828006
-
Reduced enterobacterial and increased staphylococcal colonization of the infantile bowel: An effect of hygienic lifestyle?
-
Adlerberth I, Lindberg E, Aberg N, Hesselmar B, Saalman R, et al. (2006) Reduced enterobacterial and increased staphylococcal colonization of the infantile bowel: an effect of hygienic lifestyle? Pediatr Res 59: 96-101.
-
(2006)
Pediatr Res
, vol.59
, pp. 96-101
-
-
Adlerberth, I.1
Lindberg, E.2
Aberg, N.3
Hesselmar, B.4
Saalman, R.5
|