-
1
-
-
0036136459
-
16S rRNA-based analysis of microbiota from the cecum of broiler chickens
-
10.1128/AEM.68.1.124-137.2002, 126585, 11772618
-
Zhu XY, Zhong T, Pandya Y, Joerger RD. 16S rRNA-based analysis of microbiota from the cecum of broiler chickens. Appl Environ Microbiol 2002, 68:124-137. 10.1128/AEM.68.1.124-137.2002, 126585, 11772618.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 124-137
-
-
Zhu, X.Y.1
Zhong, T.2
Pandya, Y.3
Joerger, R.D.4
-
2
-
-
0242515761
-
Effects of dietary fat source and subtherapeutic levels of antibiotic on the bacterial community in the ileum of broiler chickens at various ages
-
10.1128/AEM.68.12.5918-5924.2002, 134372, 12450811
-
Knarreborg A, Simon MA, Engberg RM, Jensen BB, Tannock GW. Effects of dietary fat source and subtherapeutic levels of antibiotic on the bacterial community in the ileum of broiler chickens at various ages. Appl Environ Microbiol 2002, 68:5918-5924. 10.1128/AEM.68.12.5918-5924.2002, 134372, 12450811.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 5918-5924
-
-
Knarreborg, A.1
Simon, M.A.2
Engberg, R.M.3
Jensen, B.B.4
Tannock, G.W.5
-
3
-
-
0242489005
-
Diversity and succession of the intestinal bacterial community of the maturing broiler chicken
-
10.1128/AEM.69.11.6816-6824.2003, 262306, 14602645
-
Lu J, Idris U, Harmon B, Hofacre C, Maurer JJ, Lee MD. Diversity and succession of the intestinal bacterial community of the maturing broiler chicken. Appl Environ Microbiol 2003, 69:6816-6824. 10.1128/AEM.69.11.6816-6824.2003, 262306, 14602645.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 6816-6824
-
-
Lu, J.1
Idris, U.2
Harmon, B.3
Hofacre, C.4
Maurer, J.J.5
Lee, M.D.6
-
4
-
-
80051856129
-
The influence of the cage system and colonisation of Salmonella Enteritidis on the microbial gut flora of laying hens studied by T-RFLP and 454 pyrosequencing
-
10.1186/1471-2180-11-187, 3188488, 21859465
-
Nordentoft S, Molbak L, Bjerrum L, De Vylder J, Van Immerseel F, Pedersen K. The influence of the cage system and colonisation of Salmonella Enteritidis on the microbial gut flora of laying hens studied by T-RFLP and 454 pyrosequencing. BMC Microbiol 2011, 11:187. 10.1186/1471-2180-11-187, 3188488, 21859465.
-
(2011)
BMC Microbiol
, vol.11
, pp. 187
-
-
Nordentoft, S.1
Molbak, L.2
Bjerrum, L.3
De Vylder, J.4
Van Immerseel, F.5
Pedersen, K.6
-
5
-
-
70450182962
-
Economic, ecological, and social performance of conventional and organic broiler production in the Netherlands
-
10.1080/00071660903140999, 19904633
-
Bokkers EA, de Boer IJ. Economic, ecological, and social performance of conventional and organic broiler production in the Netherlands. Br Poult Sci 2009, 50:546-557. 10.1080/00071660903140999, 19904633.
-
(2009)
Br Poult Sci
, vol.50
, pp. 546-557
-
-
Bokkers, E.A.1
de Boer, I.J.2
-
6
-
-
4444247028
-
Microflora ecology of the chicken intestine using 16S ribosomal DNA primers
-
Amit-Romach E, Sklan D, Uni Z. Microflora ecology of the chicken intestine using 16S ribosomal DNA primers. Poult Sci 2004, 83:1093-1098.
-
(2004)
Poult Sci
, vol.83
, pp. 1093-1098
-
-
Amit-Romach, E.1
Sklan, D.2
Uni, Z.3
-
7
-
-
51449108782
-
Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum microbiome
-
10.1371/journal.pone.0002945, 2492807, 18698407
-
Qu A, Brulc JM, Wilson MK, Law BF, Theoret JR, Joens LA, Konkel ME, Angly F, Dinsdale EA, Edwards RA, et al. Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum microbiome. PLoS One 2008, 3:e2945. 10.1371/journal.pone.0002945, 2492807, 18698407.
-
(2008)
PLoS One
, vol.3
-
-
Qu, A.1
Brulc, J.M.2
Wilson, M.K.3
Law, B.F.4
Theoret, J.R.5
Joens, L.A.6
Konkel, M.E.7
Angly, F.8
Dinsdale, E.A.9
Edwards, R.A.10
-
8
-
-
79959397353
-
Immune response of chicken gut to natural colonization by gut microflora and to Salmonella enterica serovar Enteritidis infection
-
10.1128/IAI.01375-10, 3191970, 21555397
-
Crhanova M, Hradecka H, Faldynova M, Matulova M, Havlickova H, Sisak F, Rychlik I. Immune response of chicken gut to natural colonization by gut microflora and to Salmonella enterica serovar Enteritidis infection. Infect Immun 2011, 79:2755-2763. 10.1128/IAI.01375-10, 3191970, 21555397.
-
(2011)
Infect Immun
, vol.79
, pp. 2755-2763
-
-
Crhanova, M.1
Hradecka, H.2
Faldynova, M.3
Matulova, M.4
Havlickova, H.5
Sisak, F.6
Rychlik, I.7
-
9
-
-
56849106496
-
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
-
10.1371/journal.pbio.0060280, 2586385, 19018661
-
Dethlefsen L, Huse S, Sogin ML, Relman DA. The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol 2008, 6:e280. 10.1371/journal.pbio.0060280, 2586385, 19018661.
-
(2008)
PLoS Biol
, vol.6
-
-
Dethlefsen, L.1
Huse, S.2
Sogin, M.L.3
Relman, D.A.4
-
10
-
-
66549102207
-
Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation
-
10.1128/IAI.01520-08, 2687343, 19307217
-
Antonopoulos DA, Huse SM, Morrison HG, Schmidt TM, Sogin ML, Young VB. Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation. Infect Immun 2009, 77:2367-2375. 10.1128/IAI.01520-08, 2687343, 19307217.
-
(2009)
Infect Immun
, vol.77
, pp. 2367-2375
-
-
Antonopoulos, D.A.1
Huse, S.M.2
Morrison, H.G.3
Schmidt, T.M.4
Sogin, M.L.5
Young, V.B.6
-
11
-
-
78049522796
-
Long-term impacts of antibiotic exposure on the human intestinal microbiota
-
10.1099/mic.0.040618-0, 20705661
-
Jernberg C, Lofmark S, Edlund C, Jansson JK. Long-term impacts of antibiotic exposure on the human intestinal microbiota. Microbiology 2010, 156:3216-3223. 10.1099/mic.0.040618-0, 20705661.
-
(2010)
Microbiology
, vol.156
, pp. 3216-3223
-
-
Jernberg, C.1
Lofmark, S.2
Edlund, C.3
Jansson, J.K.4
-
12
-
-
79952759738
-
Antibiotic administration alters the community structure of the gastrointestinal micobiota
-
10.4161/gmic.1.4.12614, 2954510,2954510, 20953272
-
Robinson CJ, Young VB. Antibiotic administration alters the community structure of the gastrointestinal micobiota. Gut Microbes 2010, 1:279-284. 10.4161/gmic.1.4.12614, 2954510,2954510, 20953272.
-
(2010)
Gut Microbes
, vol.1
, pp. 279-284
-
-
Robinson, C.J.1
Young, V.B.2
-
13
-
-
0037305429
-
Broad-range ribosomal RNA real-time PCR after removal of DNA from reagents: melting profiles for clinically important bacteria
-
10.1373/49.2.306, 12560356
-
Tseng CP, Cheng JC, Tseng CC, Wang C, Chen YL, Chiu DT, Liao HC, Chang SS. Broad-range ribosomal RNA real-time PCR after removal of DNA from reagents: melting profiles for clinically important bacteria. Clin Chem 2003, 49:306-309. 10.1373/49.2.306, 12560356.
-
(2003)
Clin Chem
, vol.49
, pp. 306-309
-
-
Tseng, C.P.1
Cheng, J.C.2
Tseng, C.C.3
Wang, C.4
Chen, Y.L.5
Chiu, D.T.6
Liao, H.C.7
Chang, S.S.8
-
14
-
-
0036682224
-
PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database
-
10.1093/nar/gkf450, 137075, 12140334
-
Ashelford KE, Weightman AJ, Fry JC. PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database. Nucleic Acids Res 2002, 30:3481-9. 10.1093/nar/gkf450, 137075, 12140334.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3481-3489
-
-
Ashelford, K.E.1
Weightman, A.J.2
Fry, J.C.3
-
15
-
-
84871905995
-
Influence of Salmonella enterica serovar Enteritidis infection on the development of cecum microbiota in newly hatched chicks
-
10.1128/AEM.02628-12, 23144133
-
Juricova H, Videnska P, Lukac M, Faldynova M, Babak V, Havlickova H, Sisak F, Rychlik I. Influence of Salmonella enterica serovar Enteritidis infection on the development of cecum microbiota in newly hatched chicks. Appl Environ Microbiol 2013, 79:745-7. 10.1128/AEM.02628-12, 23144133.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 745-747
-
-
Juricova, H.1
Videnska, P.2
Lukac, M.3
Faldynova, M.4
Babak, V.5
Havlickova, H.6
Sisak, F.7
Rychlik, I.8
-
16
-
-
84867686885
-
Characterization of chicken spleen transcriptome after infection with Salmonella enterica serovar Enteritidis
-
10.1371/journal.pone.0048101, 3477135, 23094107
-
Matulova M, Rajova J, Vlasatikova L, Volf J, Stepanova H, Havlickova H, Sisak F, Rychlik I. Characterization of chicken spleen transcriptome after infection with Salmonella enterica serovar Enteritidis. PLoS One 2012, 7:e48101. 10.1371/journal.pone.0048101, 3477135, 23094107.
-
(2012)
PLoS One
, vol.7
-
-
Matulova, M.1
Rajova, J.2
Vlasatikova, L.3
Volf, J.4
Stepanova, H.5
Havlickova, H.6
Sisak, F.7
Rychlik, I.8
-
17
-
-
10744219802
-
Quantitative real-time PCR using TaqMan and SYBR Green for Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, tetQ gene and total bacteria
-
10.1016/S0928-8244(03)00224-4, 14557000
-
Maeda H, Fujimoto C, Haruki Y, Maeda T, Kokeguchi S, Petelin M, Arai H, Tanimoto I, Nishimura F, Takashiba S. Quantitative real-time PCR using TaqMan and SYBR Green for Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, tetQ gene and total bacteria. FEMS Immunol Med Microbiol 2003, 39:81-86. 10.1016/S0928-8244(03)00224-4, 14557000.
-
(2003)
FEMS Immunol Med Microbiol
, vol.39
, pp. 81-86
-
-
Maeda, H.1
Fujimoto, C.2
Haruki, Y.3
Maeda, T.4
Kokeguchi, S.5
Petelin, M.6
Arai, H.7
Tanimoto, I.8
Nishimura, F.9
Takashiba, S.10
-
18
-
-
77956578390
-
Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome
-
10.3748/wjg.v16.i33.4135, 2932916, 20806429
-
Nossa CW, Oberdorf WE, Yang L, Aas JA, Paster BJ, Desantis TZ, Brodie EL, Malamud D, Poles MA, Pei Z. Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome. World J Gastroenterol 2010, 16:4135-4144. 10.3748/wjg.v16.i33.4135, 2932916, 20806429.
-
(2010)
World J Gastroenterol
, vol.16
, pp. 4135-4144
-
-
Nossa, C.W.1
Oberdorf, W.E.2
Yang, L.3
Aas, J.A.4
Paster, B.J.5
Desantis, T.Z.6
Brodie, E.L.7
Malamud, D.8
Poles, M.A.9
Pei, Z.10
-
19
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
10.1038/nmeth.f.303, 3156573, 20383131
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010, 7:335-336. 10.1038/nmeth.f.303, 3156573, 20383131.
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Pena, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
-
20
-
-
29144464937
-
UniFrac: a new phylogenetic method for comparing microbial communities
-
10.1128/AEM.71.12.8228-8235.2005, 1317376, 16332807
-
Lozupone C, Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 2005, 71:8228-8235. 10.1128/AEM.71.12.8228-8235.2005, 1317376, 16332807.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
|