메뉴 건너뛰기




Volumn 104, Issue 6, 2014, Pages 482-489

Genome-wide transcriptome analysis of human epidermal melanocytes

Author keywords

Melanocytes; Melanosomes; Pigmentation; RNA Seq; Signal transduction; Transcriptome

Indexed keywords

G PROTEIN COUPLED RECEPTOR; ION CHANNEL; MESSENGER RNA; TRANSCRIPTION FACTOR; TRANSCRIPTOME;

EID: 84918799293     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2014.09.010     Document Type: Article
Times cited : (32)

References (69)
  • 2
    • 33947616725 scopus 로고    scopus 로고
    • Human skin pigmentation: melanocytes modulate skin color in response to stress
    • Costin G.E., Hearing V.J. Human skin pigmentation: melanocytes modulate skin color in response to stress. FASEB J. 2007, 21:976-994.
    • (2007) FASEB J. , vol.21 , pp. 976-994
    • Costin, G.E.1    Hearing, V.J.2
  • 3
    • 84918776147 scopus 로고    scopus 로고
    • Skin cancer statistics, in, Centers for Disease Control and Prevention.
    • Skin cancer statistics, in, Centers for Disease Control and Prevention.
  • 7
    • 0028580577 scopus 로고
    • Skin cancer in African Americans
    • Halder R.M., Bridgeman-Shah S. Skin cancer in African Americans. Cancer 1995, 75:667-673.
    • (1995) Cancer , vol.75 , pp. 667-673
    • Halder, R.M.1    Bridgeman-Shah, S.2
  • 8
    • 0026470860 scopus 로고
    • Nonmelanoma cancers of the skin
    • Preston D.S., Stern R.S. Nonmelanoma cancers of the skin. N. Engl. J. Med. 1992, 327:1649-1662.
    • (1992) N. Engl. J. Med. , vol.327 , pp. 1649-1662
    • Preston, D.S.1    Stern, R.S.2
  • 11
    • 0033854056 scopus 로고    scopus 로고
    • MITF: a stream flowing for pigment cells
    • Tachibana M. MITF: a stream flowing for pigment cells. Pigment Cell Res. 2000, 13:230-240.
    • (2000) Pigment Cell Res. , vol.13 , pp. 230-240
    • Tachibana, M.1
  • 13
    • 0026015177 scopus 로고
    • Pigment content of cultured human melanocytes does not correlate with tyrosinase message level
    • Naeyaert J.M., Eller M., Gordon P.R., Park H.Y., Gilchrest B.A. Pigment content of cultured human melanocytes does not correlate with tyrosinase message level. Br. J. Dermatol. 1991, 125:297-303.
    • (1991) Br. J. Dermatol. , vol.125 , pp. 297-303
    • Naeyaert, J.M.1    Eller, M.2    Gordon, P.R.3    Park, H.Y.4    Gilchrest, B.A.5
  • 16
    • 0027732667 scopus 로고
    • Contribution of melanogenic proteins to the heterogeneous pigmentation of human melanocytes
    • Abdel-Malek Z., Swope V., Collins C., Boissy R., Zhao H., Nordlund J. Contribution of melanogenic proteins to the heterogeneous pigmentation of human melanocytes. J. Cell Sci. 1993, 106(Pt 4):1323-1331.
    • (1993) J. Cell Sci. , vol.106 , pp. 1323-1331
    • Abdel-Malek, Z.1    Swope, V.2    Collins, C.3    Boissy, R.4    Zhao, H.5    Nordlund, J.6
  • 17
    • 0037906585 scopus 로고    scopus 로고
    • Ethnic variation in tyrosinase and TYRP1 expression in photoexposed and photoprotected human skin
    • Alaluf S., Barrett K., Blount M., Carter N. Ethnic variation in tyrosinase and TYRP1 expression in photoexposed and photoprotected human skin. Pigment Cell Res. 2003, 16:35-42.
    • (2003) Pigment Cell Res. , vol.16 , pp. 35-42
    • Alaluf, S.1    Barrett, K.2    Blount, M.3    Carter, N.4
  • 19
    • 33747184831 scopus 로고    scopus 로고
    • A golden age of human pigmentation genetics
    • Sturm R.A. A golden age of human pigmentation genetics. Trends Genet. 2006, 22:464-468.
    • (2006) Trends Genet. , vol.22 , pp. 464-468
    • Sturm, R.A.1
  • 20
    • 0036215886 scopus 로고    scopus 로고
    • Distinctive distribution of AIM1 polymorphism among major human populations with different skin color
    • Nakayama K., Fukamachi S., Kimura H., Koda Y., Soemantri A., Ishida T. Distinctive distribution of AIM1 polymorphism among major human populations with different skin color. J. Hum. Genet. 2002, 47:92-94.
    • (2002) J. Hum. Genet. , vol.47 , pp. 92-94
    • Nakayama, K.1    Fukamachi, S.2    Kimura, H.3    Koda, Y.4    Soemantri, A.5    Ishida, T.6
  • 21
    • 14944367557 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms in the MATP gene are associated with normal human pigmentation variation
    • Graf J., Hodgson R., van Daal A. Single nucleotide polymorphisms in the MATP gene are associated with normal human pigmentation variation. Hum. Mutat. 2005, 25:278-284.
    • (2005) Hum. Mutat. , vol.25 , pp. 278-284
    • Graf, J.1    Hodgson, R.2    van Daal, A.3
  • 23
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
    • Marioni J.C., Mason C.E., Mane S.M., Stephens M., Gilad Y. RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res. 2008, 18:1509-1517.
    • (2008) Genome Res. , vol.18 , pp. 1509-1517
    • Marioni, J.C.1    Mason, C.E.2    Mane, S.M.3    Stephens, M.4    Gilad, Y.5
  • 24
    • 57749195712 scopus 로고    scopus 로고
    • RNA-seq: a revolutionary tool for transcriptomics
    • Wang Z., Gerstein M., Snyder M. RNA-seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet. 2009, 10:57-63.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 26
    • 84859436530 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): current status, new features and genome annotation policy
    • Pruitt K.D., Tatusova T., Brown G.R., Maglott D.R. NCBI reference sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res. 2012, 40:D130-D135.
    • (2012) Nucleic Acids Res. , vol.40 , pp. D130-D135
    • Pruitt, K.D.1    Tatusova, T.2    Brown, G.R.3    Maglott, D.R.4
  • 27
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B., Trapnell C., Pop M., Salzberg S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009, 10:R25.
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 28
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-seq
    • Trapnell C., Pachter L., Salzberg S.L. TopHat: discovering splice junctions with RNA-seq. Bioinformatics 2009, 25:1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 30
    • 84858041341 scopus 로고    scopus 로고
    • Differential expression analysis of multifactor RNA-seq experiments with respect to biological variation
    • McCarthy D.J., Chen Y., Smyth G.K. Differential expression analysis of multifactor RNA-seq experiments with respect to biological variation. Nucleic Acids Res. 2012, 40:4288-4297.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 4288-4297
    • McCarthy, D.J.1    Chen, Y.2    Smyth, G.K.3
  • 31
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: a bioconductor package for differential expression analysis of digital gene expression data
    • Robinson M.D., McCarthy D.J., Smyth G.K. edgeR: a bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 2010, 26:139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 32
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Benjamini Y., Yekutieli D. The control of the false discovery rate in multiple testing under dependency. Ann. Appl. Stat. 2001, 29:1165-1188.
    • (2001) Ann. Appl. Stat. , vol.29 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 35
    • 0029886028 scopus 로고    scopus 로고
    • Mutation in and lack of expression of tyrosinase-related protein-1 (TRP-1) in melanocytes from an individual with brown oculocutaneous albinism: a new subtype of albinism classified as "OCA3"
    • Boissy R.E., Zhao H., Oetting W.S., Austin L.M., Wildenberg S.C., Boissy Y.L., Zhao Y., Sturm R.A., Hearing V.J., King R.A., Nordlund J.J. Mutation in and lack of expression of tyrosinase-related protein-1 (TRP-1) in melanocytes from an individual with brown oculocutaneous albinism: a new subtype of albinism classified as "OCA3". Am. J. Hum. Genet. 1996, 58:1145-1156.
    • (1996) Am. J. Hum. Genet. , vol.58 , pp. 1145-1156
    • Boissy, R.E.1    Zhao, H.2    Oetting, W.S.3    Austin, L.M.4    Wildenberg, S.C.5    Boissy, Y.L.6    Zhao, Y.7    Sturm, R.A.8    Hearing, V.J.9    King, R.A.10    Nordlund, J.J.11
  • 36
    • 0030828856 scopus 로고    scopus 로고
    • Rufous oculocutaneous albinism in southern African Blacks is caused by mutations in the TYRP1 gene
    • Manga P., Kromberg J.G., Box N.F., Sturm R.A., Jenkins T., Ramsay M. Rufous oculocutaneous albinism in southern African Blacks is caused by mutations in the TYRP1 gene. Am. J. Hum. Genet. 1997, 61:1095-1101.
    • (1997) Am. J. Hum. Genet. , vol.61 , pp. 1095-1101
    • Manga, P.1    Kromberg, J.G.2    Box, N.F.3    Sturm, R.A.4    Jenkins, T.5    Ramsay, M.6
  • 38
    • 0028639196 scopus 로고
    • Targeted and natural (piebald-lethal) mutations of endothelin-B receptor gene produce megacolon associated with spotted coat color in mice
    • Hosoda K., Hammer R.E., Richardson J.A., Baynash A.G., Cheung J.C., Giaid A., Yanagisawa M. Targeted and natural (piebald-lethal) mutations of endothelin-B receptor gene produce megacolon associated with spotted coat color in mice. Cell 1994, 79:1267-1276.
    • (1994) Cell , vol.79 , pp. 1267-1276
    • Hosoda, K.1    Hammer, R.E.2    Richardson, J.A.3    Baynash, A.G.4    Cheung, J.C.5    Giaid, A.6    Yanagisawa, M.7
  • 39
    • 0034124462 scopus 로고    scopus 로고
    • The melanocortin 1 receptor (MC1R): more than just red hair
    • Rees J.L. The melanocortin 1 receptor (MC1R): more than just red hair. Pigment Cell Res. 2000, 13:135-140.
    • (2000) Pigment Cell Res. , vol.13 , pp. 135-140
    • Rees, J.L.1
  • 45
    • 33646153073 scopus 로고    scopus 로고
    • Distinctive role of the cKit receptor tyrosine kinase signaling in mammalian melanocytes
    • Alexeev V., Yoon K. Distinctive role of the cKit receptor tyrosine kinase signaling in mammalian melanocytes. J. Invest. Dermatol. 2006, 126:1102-1110.
    • (2006) J. Invest. Dermatol. , vol.126 , pp. 1102-1110
    • Alexeev, V.1    Yoon, K.2
  • 47
    • 34648846034 scopus 로고    scopus 로고
    • Melanocyte receptors: clinical implications and therapeutic relevance
    • (viii-ix)
    • Carlson J.A., Linette G.P., Aplin A., Ng B., Slominski A. Melanocyte receptors: clinical implications and therapeutic relevance. Dermatol. Clin. 2007, 25:541-557. (viii-ix).
    • (2007) Dermatol. Clin. , vol.25 , pp. 541-557
    • Carlson, J.A.1    Linette, G.P.2    Aplin, A.3    Ng, B.4    Slominski, A.5
  • 48
    • 36749008553 scopus 로고    scopus 로고
    • Activating mutation in a mucolipin transient receptor potential channel leads to melanocyte loss in varitint-waddler mice
    • Xu H., Delling M., Li L., Dong X., Clapham D.E. Activating mutation in a mucolipin transient receptor potential channel leads to melanocyte loss in varitint-waddler mice. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:18321-18326.
    • (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , pp. 18321-18326
    • Xu, H.1    Delling, M.2    Li, L.3    Dong, X.4    Clapham, D.E.5
  • 49
  • 51
    • 42149185064 scopus 로고    scopus 로고
    • Molecular physiology of bestrophins: multifunctional membrane proteins linked to best disease and other retinopathies
    • Hartzell H.C., Qu Z., Yu K., Xiao Q., Chien L.T. Molecular physiology of bestrophins: multifunctional membrane proteins linked to best disease and other retinopathies. Physiol. Rev. 2008, 88:639-672.
    • (2008) Physiol. Rev. , vol.88 , pp. 639-672
    • Hartzell, H.C.1    Qu, Z.2    Yu, K.3    Xiao, Q.4    Chien, L.T.5
  • 52
    • 77952670207 scopus 로고    scopus 로고
    • Two decades with dimorphic Chloride Intracellular Channels (CLICs)
    • Singh H. Two decades with dimorphic Chloride Intracellular Channels (CLICs). FEBS Lett. 2010, 584:2112-2121.
    • (2010) FEBS Lett. , vol.584 , pp. 2112-2121
    • Singh, H.1
  • 53
    • 0033119629 scopus 로고    scopus 로고
    • A capsaicin-receptor homologue with a high threshold for noxious heat
    • Caterina M.J., Rosen T.A., Tominaga M., Brake A.J., Julius D. A capsaicin-receptor homologue with a high threshold for noxious heat. Nature 1999, 398:436-441.
    • (1999) Nature , vol.398 , pp. 436-441
    • Caterina, M.J.1    Rosen, T.A.2    Tominaga, M.3    Brake, A.J.4    Julius, D.5
  • 58
    • 84873479199 scopus 로고    scopus 로고
    • UV light phototransduction activates transient receptor potential A1 ion channels in human melanocytes
    • Bellono N.W., Kammel L.G., Zimmerman A.L., Oancea E. UV light phototransduction activates transient receptor potential A1 ion channels in human melanocytes. Proc. Natl. Acad. Sci. U. S. A. 2013, 110:2383-2388.
    • (2013) Proc. Natl. Acad. Sci. U. S. A. , vol.110 , pp. 2383-2388
    • Bellono, N.W.1    Kammel, L.G.2    Zimmerman, A.L.3    Oancea, E.4
  • 60
    • 33747882661 scopus 로고    scopus 로고
    • MITF: master regulator of melanocyte development and melanoma oncogene
    • Levy C., Khaled M., Fisher D.E. MITF: master regulator of melanocyte development and melanoma oncogene. Trends Mol. Med. 2006, 12:406-414.
    • (2006) Trends Mol. Med. , vol.12 , pp. 406-414
    • Levy, C.1    Khaled, M.2    Fisher, D.E.3
  • 61
    • 0034536338 scopus 로고    scopus 로고
    • Direct regulation of the Microphthalmia promoter by Sox10 links Waardenburg-Shah syndrome (WS4)-associated hypopigmentation and deafness to WS2
    • Lee M., Goodall J., Verastegui C., Ballotti R., Goding C.R. Direct regulation of the Microphthalmia promoter by Sox10 links Waardenburg-Shah syndrome (WS4)-associated hypopigmentation and deafness to WS2. J. Biol. Chem. 2000, 275:37978-37983.
    • (2000) J. Biol. Chem. , vol.275 , pp. 37978-37983
    • Lee, M.1    Goodall, J.2    Verastegui, C.3    Ballotti, R.4    Goding, C.R.5
  • 66
    • 79958152296 scopus 로고    scopus 로고
    • Identification of an animal sucrose transporter
    • Meyer H., Vitavska O., Wieczorek H. Identification of an animal sucrose transporter. J. Cell Sci. 2011, 124:1984-1991.
    • (2011) J. Cell Sci. , vol.124 , pp. 1984-1991
    • Meyer, H.1    Vitavska, O.2    Wieczorek, H.3
  • 67
    • 0026686945 scopus 로고
    • The mouse pink-eyed dilution gene: association with human Prader-Willi and Angelman syndromes
    • Gardner J.M., Nakatsu Y., Gondo Y., Lee S., Lyon M.F., King R.A., Brilliant M.H. The mouse pink-eyed dilution gene: association with human Prader-Willi and Angelman syndromes. Science 1992, 257:1121-1124.
    • (1992) Science , vol.257 , pp. 1121-1124
    • Gardner, J.M.1    Nakatsu, Y.2    Gondo, Y.3    Lee, S.4    Lyon, M.F.5    King, R.A.6    Brilliant, M.H.7
  • 68
    • 84857192750 scopus 로고    scopus 로고
    • HERC2 rs12913832 modulates human pigmentation by attenuating chromatin-loop formation between a long-range enhancer and the OCA2 promoter
    • Visser M., Kayser M., Palstra R.J. HERC2 rs12913832 modulates human pigmentation by attenuating chromatin-loop formation between a long-range enhancer and the OCA2 promoter. Genome Res. 2012, 22:446-455.
    • (2012) Genome Res. , vol.22 , pp. 446-455
    • Visser, M.1    Kayser, M.2    Palstra, R.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.