-
1
-
-
80054856259
-
DARPins and other repeat protein scaffolds: Advances in engineering and applications
-
Boersma YL, Plückthun A (2011) DARPins and other repeat protein scaffolds: Advances in engineering and applications. Curr Opin Biotechnol 22(6):849-857.
-
(2011)
Curr Opin Biotechnol
, vol.22
, Issue.6
, pp. 849-857
-
-
Boersma, Y.L.1
Plückthun, A.2
-
2
-
-
0035692811
-
The leucine-rich repeat as a protein recognition motif
-
Kobe B, Kajava AV (2001) The leucine-rich repeat as a protein recognition motif. Curr Opin Struct Biol 11(6):725-732.
-
(2001)
Curr Opin Struct Biol
, vol.11
, Issue.6
, pp. 725-732
-
-
Kobe, B.1
Kajava, A.V.2
-
3
-
-
0344628648
-
TPR proteins: The versatile helix
-
D'Andrea LD, Regan L (2003) TPR proteins: The versatile helix. Trends Biochem Sci 28(12):655-662.
-
(2003)
Trends Biochem Sci
, vol.28
, Issue.12
, pp. 655-662
-
-
D'Andrea, L.D.1
Regan, L.2
-
4
-
-
33845934490
-
Ankyrin repeat: A unique motif mediating proteinprotein interactions
-
Li J, Mahajan A, Tsai M-D (2006) Ankyrin repeat: A unique motif mediating proteinprotein interactions. Biochemistry 45(51):15168-15178.
-
(2006)
Biochemistry
, vol.45
, Issue.51
, pp. 15168-15178
-
-
Li, J.1
Mahajan, A.2
Tsai, M.-D.3
-
5
-
-
77649148783
-
Functional diversity of ankyrin repeats in microbial proteins
-
Al-Khodor S, Price CT, Kalia A, Abu Kwaik Y (2010) Functional diversity of ankyrin repeats in microbial proteins. Trends Microbiol 18(3):132-139.
-
(2010)
Trends Microbiol
, vol.18
, Issue.3
, pp. 132-139
-
-
Al-Khodor, S.1
Price, C.T.2
Kalia, A.3
Abu Kwaik, Y.4
-
6
-
-
84865174088
-
Tandem repeats in proteins: From sequence to structure
-
Kajava AV (2012) Tandem repeats in proteins: From sequence to structure. J Struct Biol 179(3):279-288.
-
(2012)
J Struct Biol
, vol.179
, Issue.3
, pp. 279-288
-
-
Kajava, A.V.1
-
7
-
-
84884635701
-
Repeat protein engineering: Creating functional nanostructures/biomaterials from modular building blocks
-
Main ERG, Phillips JJ, Millership C (2013) Repeat protein engineering: Creating functional nanostructures/biomaterials from modular building blocks. Biochem Soc Trans 41(5):1152-1158.
-
(2013)
Biochem Soc Trans
, vol.41
, Issue.5
, pp. 1152-1158
-
-
Main, E.R.G.1
Phillips, J.J.2
Millership, C.3
-
8
-
-
0037468685
-
A novel strategy to design binding molecules harnessing the modular nature of repeat proteins
-
Forrer P, Stumpp MT, Binz HK, Plückthun A (2003) A novel strategy to design binding molecules harnessing the modular nature of repeat proteins. FEBS Lett 539(1-3):2-6.
-
(2003)
FEBS Lett
, vol.539
, Issue.1-3
, pp. 2-6
-
-
Forrer, P.1
Stumpp, M.T.2
Binz, H.K.3
Plückthun, A.4
-
9
-
-
0037648552
-
Design of stable innodataalpha-helical arrays from an idealized TPR motif
-
Main ERG, Xiong Y, Cocco MJ, D'Andrea L, Regan L (2003) Design of stable innodataalpha-helical arrays from an idealized TPR motif. Structure 11(5):497-508.
-
(2003)
Structure
, vol.11
, Issue.5
, pp. 497-508
-
-
Main, E.R.G.1
Xiong, Y.2
Cocco, M.J.3
D'Andrea, L.4
Regan, L.5
-
10
-
-
0037452697
-
Designed to be stable: Crystal structure of a consensus ankyrin repeat protein
-
Kohl A, et al. (2003) Designed to be stable: Crystal structure of a consensus ankyrin repeat protein. Proc Natl Acad Sci USA 100(4):1700-1705.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.4
, pp. 1700-1705
-
-
Kohl, A.1
-
11
-
-
0042780350
-
Designing repeat proteins: Well-expressed, soluble and stable proteins from combinatorial libraries of consensus ankyrin repeat proteins
-
Binz HK, Stumpp MT, Forrer P, Amstutz P, Plückthun A (2003) Designing repeat proteins: Well-expressed, soluble and stable proteins from combinatorial libraries of consensus ankyrin repeat proteins. J Mol Biol 332(2):489-503.
-
(2003)
J Mol Biol
, vol.332
, Issue.2
, pp. 489-503
-
-
Binz, H.K.1
Stumpp, M.T.2
Forrer, P.3
Amstutz, P.4
Plückthun, A.5
-
12
-
-
78349304669
-
Design, production and molecular structure of a new family of artificial alpha-helicoidal repeat proteins (αRep) based on thermostable HEAT-like repeats
-
Urvoas A, et al. (2010) Design, production and molecular structure of a new family of artificial alpha-helicoidal repeat proteins (αRep) based on thermostable HEAT-like repeats. J Mol Biol 404(2):307-327.
-
(2010)
J Mol Biol
, vol.404
, Issue.2
, pp. 307-327
-
-
Urvoas, A.1
-
13
-
-
1042291215
-
Structural principles of leucine-rich repeat (LRR) proteins
-
Enkhbayar P, Kamiya M, Osaki M, Matsumoto T, Matsushima N (2004) Structural principles of leucine-rich repeat (LRR) proteins. Proteins 54(3):394-403.
-
(2004)
Proteins
, vol.54
, Issue.3
, pp. 394-403
-
-
Enkhbayar, P.1
Kamiya, M.2
Osaki, M.3
Matsumoto, T.4
Matsushima, N.5
-
14
-
-
0032478536
-
Structural diversity of leucine-rich repeat proteins
-
Kajava AV (1998) Structural diversity of leucine-rich repeat proteins. J Mol Biol 277(3):519-527.
-
(1998)
J Mol Biol
, vol.277
, Issue.3
, pp. 519-527
-
-
Kajava, A.V.1
-
15
-
-
42949142243
-
The leucine-rich repeat domain of Internalin B folds along a polarized N-terminal pathway
-
Courtemanche N, Barrick D (2008) The leucine-rich repeat domain of Internalin B folds along a polarized N-terminal pathway. Structure 16(5):705-714.
-
(2008)
Structure
, vol.16
, Issue.5
, pp. 705-714
-
-
Courtemanche, N.1
Barrick, D.2
-
16
-
-
84904157089
-
Capping motifs stabilize the leucine-rich repeat protein PP32 and rigidify adjacent repeats
-
Dao TP, Majumdar A, Barrick D (2014) Capping motifs stabilize the leucine-rich repeat protein PP32 and rigidify adjacent repeats. Protein Sci 23(6):801-11.
-
(2014)
Protein Sci
, vol.23
, Issue.6
, pp. 801-811
-
-
Dao, T.P.1
Majumdar, A.2
Barrick, D.3
-
17
-
-
0043281585
-
Designing repeat proteins: Modular leucine-rich repeat protein libraries based on the mammalian ribonuclease inhibitor family
-
Stumpp MT, Forrer P, Binz HK, Plückthun A (2003) Designing repeat proteins: Modular leucine-rich repeat protein libraries based on the mammalian ribonuclease inhibitor family. J Mol Biol 332(2):471-487.
-
(2003)
J Mol Biol
, vol.332
, Issue.2
, pp. 471-487
-
-
Stumpp, M.T.1
Forrer, P.2
Binz, H.K.3
Plückthun, A.4
-
18
-
-
84904169024
-
Consensus design of a NOD receptor leucine rich repeat domain with binding affinity for a muramyl dipeptide, a bacterial cell wall fragment
-
Parker R, Mercedes-Camacho A, Grove TZ (2014) Consensus design of a NOD receptor leucine rich repeat domain with binding affinity for a muramyl dipeptide, a bacterial cell wall fragment. Protein Sci 23(6):790-800.
-
(2014)
Protein Sci
, vol.23
, Issue.6
, pp. 790-800
-
-
Parker, R.1
Mercedes-Camacho, A.2
Grove, T.Z.3
-
19
-
-
84863229636
-
Design of a binding scaffold based on variable lymphocyte receptors of jawless vertebrates by module engineering
-
Lee S-C, et al. (2012) Design of a binding scaffold based on variable lymphocyte receptors of jawless vertebrates by module engineering. Proc Natl Acad Sci USA 109(9):3299-3304.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.9
, pp. 3299-3304
-
-
Lee, S.-C.1
-
20
-
-
79952478259
-
The contribution of entropy, enthalpy, and hydrophobic desolvation to cooperativity in repeat-protein folding
-
Aksel T, Majumdar A, Barrick D (2011) The contribution of entropy, enthalpy, and hydrophobic desolvation to cooperativity in repeat-protein folding. Structure 19(3): 349-360.
-
(2011)
Structure
, vol.19
, Issue.3
, pp. 349-360
-
-
Aksel, T.1
Majumdar, A.2
Barrick, D.3
-
21
-
-
0027718173
-
Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats
-
Kobe B, Deisenhofer J (1993) Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 366(6457):751-756.
-
(1993)
Nature
, vol.366
, Issue.6457
, pp. 751-756
-
-
Kobe, B.1
Deisenhofer, J.2
-
22
-
-
0030596012
-
Mechanism of ribonuclease inhibition by ribonuclease inhibitor protein based on the crystal structure of its complex with ribonuclease A
-
Kobe B, Deisenhofer J (1996) Mechanism of ribonuclease inhibition by ribonuclease inhibitor protein based on the crystal structure of its complex with ribonuclease A. J Mol Biol 264(5):1028-1043.
-
(1996)
J Mol Biol
, vol.264
, Issue.5
, pp. 1028-1043
-
-
Kobe, B.1
Deisenhofer, J.2
-
23
-
-
36749048724
-
Prediction of the structure of symmetrical protein assemblies
-
André I, Bradley P, Wang C, Baker D (2007) Prediction of the structure of symmetrical protein assemblies. Proc Natl Acad Sci USA 104(45):17656-17661.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.45
, pp. 17656-17661
-
-
André, I.1
Bradley, P.2
Wang, C.3
Baker, D.4
-
24
-
-
79959458821
-
Modeling symmetric macromolecular structures in Rosetta3
-
DiMaio F, Leaver-Fay A, Bradley P, Baker D, André I (2011) Modeling symmetric macromolecular structures in Rosetta3. PLoS ONE 6(6):e20450.
-
(2011)
PLoS ONE
, vol.6
, Issue.6
, pp. e20450
-
-
DiMaio, F.1
Leaver-Fay, A.2
Bradley, P.3
Baker, D.4
André, I.5
-
25
-
-
50649095790
-
Macromolecular modeling with rosetta
-
Das R, Baker D (2008) Macromolecular modeling with rosetta. Annu Rev Biochem 77:363-382.
-
(2008)
Annu Rev Biochem
, vol.77
, pp. 363-382
-
-
Das, R.1
Baker, D.2
-
26
-
-
79959615159
-
RosettaScripts: A scripting language interface to the Rosetta macromolecular modeling suite
-
Fleishman SJ, et al. (2011) RosettaScripts: A scripting language interface to the Rosetta macromolecular modeling suite. PLoS ONE 6(6):e20161.
-
(2011)
PLoS ONE
, vol.6
, Issue.6
, pp. e20161
-
-
Fleishman, S.J.1
-
27
-
-
80052334922
-
RosettaRemodel: A generalized framework for flexible backbone protein design
-
Huang P-S, et al. (2011) RosettaRemodel: A generalized framework for flexible backbone protein design. PLoS ONE 6(8):e24109.
-
(2011)
PLoS ONE
, vol.6
, Issue.8
, pp. e24109
-
-
Huang, P.-S.1
-
28
-
-
34548094323
-
Fourier transform infrared spectroscopic analysis of protein secondary structures
-
Kong J, Yu S (2007) Fourier transform infrared spectroscopic analysis of protein secondary structures. Acta Biochim Biophys Sin (Shanghai) 39(8):549-559.
-
(2007)
Acta Biochim Biophys Sin (Shanghai)
, vol.39
, Issue.8
, pp. 549-559
-
-
Kong, J.1
Yu, S.2
-
29
-
-
34250903564
-
Fractional 13C enrichment of isolated carbons using [1-13C]- or [2-13C]-glucose facilitates the accurate measurement of dynamics at backbone Calpha and side-chain methyl positions in proteins
-
Lundström P, et al. (2007) Fractional 13C enrichment of isolated carbons using [1-13C]- or [2-13C]-glucose facilitates the accurate measurement of dynamics at backbone Calpha and side-chain methyl positions in proteins. J Biomol NMR 38(3):199-212.
-
(2007)
J Biomol NMR
, vol.38
, Issue.3
, pp. 199-212
-
-
Lundström, P.1
-
30
-
-
80051673221
-
SHIFTX2: Significantly improved protein chemical shift prediction
-
Han B, Liu Y, Ginzinger SW, Wishart DS (2011) SHIFTX2: Significantly improved protein chemical shift prediction. J Biomol NMR 50(1):43-57.
-
(2011)
J Biomol NMR
, vol.50
, Issue.1
, pp. 43-57
-
-
Han, B.1
Liu, Y.2
Ginzinger, S.W.3
Wishart, D.S.4
-
31
-
-
78650615363
-
Sequence-specific
-
random coil chemical shifts of intrinsically disordered proteins
-
Tamiola K, Acar B, Mulder FAA (2010) Sequence-specific random coil chemical shifts of intrinsically disordered proteins. J Am Chem Soc 132(51):18000-18003.
-
(2010)
J Am Chem Soc
, vol.132
, Issue.51
, pp. 18000-18003
-
-
Tamiola, K.1
Acar, B.2
Mulder, F.A.A.3
-
32
-
-
0029088794
-
Proteins with leucine-rich repeats
-
Kobe B, Deisenhofer J (1995) Proteins with leucine-rich repeats. Curr Opin Struct Biol 5(3):409-416.
-
(1995)
Curr Opin Struct Biol
, vol.5
, Issue.3
, pp. 409-416
-
-
Kobe, B.1
Deisenhofer, J.2
-
33
-
-
0030437795
-
Structural and functional diversity in the leucine-rich repeat family of proteins
-
Buchanan SGSC, Gay NJ (1996) Structural and functional diversity in the leucine-rich repeat family of proteins. Prog Biophys Mol Biol 65(1-2):1-44.
-
(1996)
Prog Biophys Mol Biol
, vol.65
, Issue.1-2
, pp. 1-44
-
-
Buchanan, S.G.S.C.1
Gay, N.J.2
-
34
-
-
34447628760
-
Regions of IkappaBalpha that are critical for its inhibition of NF-kappaB.DNA interaction fold upon binding to NF-kappaB
-
Truhlar SME, Torpey JW, Komives EA (2006) Regions of IkappaBalpha that are critical for its inhibition of NF-kappaB.DNA interaction fold upon binding to NF-kappaB. Proc Natl Acad Sci USA 103(50):18951-18956.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.50
, pp. 18951-18956
-
-
Truhlar, S.M.E.1
Torpey, J.W.2
Komives, E.A.3
-
35
-
-
3042628330
-
Biophysical characterization of the free IkappaBalpha ankyrin repeat domain in solution
-
Croy CH, Bergqvist S, Huxford T, Ghosh G, Komives EA (2004) Biophysical characterization of the free IkappaBalpha ankyrin repeat domain in solution. Protein Sci 13(7):1767-1777.
-
(2004)
Protein Sci
, vol.13
, Issue.7
, pp. 1767-1777
-
-
Croy, C.H.1
Bergqvist, S.2
Huxford, T.3
Ghosh, G.4
Komives, E.A.5
-
36
-
-
36749050344
-
Repeat-protein folding: New insights into origins of cooperativity, stability, and topology
-
Kloss E, Courtemanche N, Barrick D (2008) Repeat-protein folding: New insights into origins of cooperativity, stability, and topology. Arch Biochem Biophys 469(1):83-99.
-
(2008)
Arch Biochem Biophys
, vol.469
, Issue.1
, pp. 83-99
-
-
Kloss, E.1
Courtemanche, N.2
Barrick, D.3
-
37
-
-
41149085409
-
Crystal structure and standardized geometric analysis of InlJ, a listerial virulence factor and leucine-rich repeat protein with a novel cysteine ladder
-
Bublitz M, et al. (2008) Crystal structure and standardized geometric analysis of InlJ, a listerial virulence factor and leucine-rich repeat protein with a novel cysteine ladder. J Mol Biol 378(1):87-96.
-
(2008)
J Mol Biol
, vol.378
, Issue.1
, pp. 87-96
-
-
Bublitz, M.1
|