메뉴 건너뛰기




Volumn 6, Issue 11, 2014, Pages 1525-1531

JTD special edition 'Hot Topics in COPD'-The microbiome in COPD

Author keywords

Chronic obstructive pulmonary disease (COPD); Metagenomics; Microbiome

Indexed keywords

RNA 16S;

EID: 84917741087     PISSN: 20721439     EISSN: 20776624     Source Type: Journal    
DOI: 10.3978/j.issn.2072-1439.2014.11.08     Document Type: Review
Times cited : (19)

References (48)
  • 1
    • 0022462668 scopus 로고
    • Microbial ecology and evolution: a ribosomal RNA approach
    • [PubMed]
    • Olsen GJ, Lane DJ, Giovannoni SJ, et al. Microbial ecology and evolution: a ribosomal RNA approach. Annu Rev Microbiol 1986;40:337-65. [PubMed]
    • (1986) Annu Rev Microbiol , vol.40 , pp. 337-365
    • Olsen, G.J.1    Lane, D.J.2    Giovannoni, S.J.3
  • 2
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • [PubMed]
    • Hugenholtz P, Goebel BM, Pace NR. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 1998;180:4765-74. [PubMed]
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 3
    • 0029025721 scopus 로고
    • Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors
    • [PubMed]
    • Bond PL, Hugenholtz P, Keller J, et al. Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors. Appl Environ Microbiol 1995;61:1910-6. [PubMed]
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1910-1916
    • Bond, P.L.1    Hugenholtz, P.2    Keller, J.3
  • 4
    • 84920629237 scopus 로고    scopus 로고
    • A renaissance for the pioneering 16S rRNA gene
    • [PubMed]
    • Tringe SG, Hugenholtz P. A renaissance for the pioneering 16S rRNA gene. Curr Opin Microbiol 2008;11:442-6. [PubMed]
    • (2008) Curr Opin Microbiol , vol.11 , pp. 442-446
    • Tringe, S.G.1    Hugenholtz, P.2
  • 5
    • 52949115612 scopus 로고    scopus 로고
    • Microbiology: metagenomics
    • [PubMed]
    • Hugenholtz P, Tyson GW. Microbiology: metagenomics. Nature 2008;455:481-3. [PubMed]
    • (2008) Nature , vol.455 , pp. 481-483
    • Hugenholtz, P.1    Tyson, G.W.2
  • 6
    • 84858376593 scopus 로고    scopus 로고
    • The impact of the gut microbiota on human health: an integrative view
    • [PubMed]
    • Clemente JC, Ursell LK, Parfrey LW, et al. The impact of the gut microbiota on human health: an integrative view. Cell 2012;148:1258-70. [PubMed]
    • (2012) Cell , vol.148 , pp. 1258-1270
    • Clemente, J.C.1    Ursell, L.K.2    Parfrey, L.W.3
  • 7
    • 80053122563 scopus 로고    scopus 로고
    • Topographical continuity of bacterial populations in the healthy human respiratory tract
    • [PubMed]
    • Charlson ES, Bittinger K, Haas AR, et al. Topographical continuity of bacterial populations in the healthy human respiratory tract. Am J Respir Crit Care Med 2011;184:957-63. [PubMed]
    • (2011) Am J Respir Crit Care Med , vol.184 , pp. 957-963
    • Charlson, E.S.1    Bittinger, K.2    Haas, A.R.3
  • 8
    • 79952063902 scopus 로고    scopus 로고
    • Analysis of the lung microbiome in the "healthy" smoker and in COPD
    • [PubMed]
    • Erb-Downward JR, Thompson DL, Han MK, et al. Analysis of the lung microbiome in the "healthy" smoker and in COPD. PLoS One 2011;6:e16384. [PubMed]
    • (2011) PLoS One , vol.6
    • Erb-Downward, J.R.1    Thompson, D.L.2    Han, M.K.3
  • 9
    • 77649119443 scopus 로고    scopus 로고
    • Disordered microbial communities in asthmatic airways
    • [PubMed]
    • Hilty M, Burke C, Pedro H, et al. Disordered microbial communities in asthmatic airways. PLoS One 2010;5:e8578. [PubMed]
    • (2010) PLoS One , vol.5
    • Hilty, M.1    Burke, C.2    Pedro, H.3
  • 10
    • 84861399683 scopus 로고    scopus 로고
    • The lung tissue microbiome in chronic obstructive pulmonary disease
    • [PubMed]
    • Sze MA, Dimitriu PA, Hayashi S, et al. The lung tissue microbiome in chronic obstructive pulmonary disease. Am J Respir Crit Care Med 2012;185:1073-80. [PubMed]
    • (2012) Am J Respir Crit Care Med , vol.185 , pp. 1073-1080
    • Sze, M.A.1    Dimitriu, P.A.2    Hayashi, S.3
  • 12
    • 84895811657 scopus 로고    scopus 로고
    • Towards an ecology of the lung: new conceptual models of pulmonary microbiology and pneumonia pathogenesis
    • [PubMed]
    • Dickson RP, Erb-Downward JR, Huffnagle GB. Towards an ecology of the lung: new conceptual models of pulmonary microbiology and pneumonia pathogenesis. Lancet Respir Med 2014;2:238-46. [PubMed]
    • (2014) Lancet Respir Med , vol.2 , pp. 238-246
    • Dickson, R.P.1    Erb-Downward, J.R.2    Huffnagle, G.B.3
  • 13
    • 52049092682 scopus 로고    scopus 로고
    • Worlds within worlds: evolution of the vertebrate gut microbiota
    • [PubMed]
    • Ley RE, Lozupone CA, Hamady M, et al. Worlds within worlds: evolution of the vertebrate gut microbiota. Nat Rev Microbiol 2008;6:776-88. [PubMed]
    • (2008) Nat Rev Microbiol , vol.6 , pp. 776-788
    • Ley, R.E.1    Lozupone, C.A.2    Hamady, M.3
  • 14
    • 33845874101 scopus 로고    scopus 로고
    • An obesity-associated gut microbiome with increased capacity for energy harvest
    • [PubMed]
    • Turnbaugh PJ, Ley RE, Mahowald MA, et al. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 2006;444:1027-31. [PubMed]
    • (2006) Nature , vol.444 , pp. 1027-1031
    • Turnbaugh, P.J.1    Ley, R.E.2    Mahowald, M.A.3
  • 15
    • 84867427320 scopus 로고    scopus 로고
    • The lung microbiome in moderate and severe chronic obstructive pulmonary disease
    • [PubMed]
    • Pragman AA, Kim HB, Reilly CS, et al. The lung microbiome in moderate and severe chronic obstructive pulmonary disease. PLoS One 2012;7:e47305. [PubMed]
    • (2012) PLoS One , vol.7
    • Pragman, A.A.1    Kim, H.B.2    Reilly, C.S.3
  • 16
    • 84879973355 scopus 로고    scopus 로고
    • Analysis of the airway microbiota of healthy individuals and patients with chronic obstructive pulmonary disease by T-RFLP and clone sequencing
    • [PubMed]
    • Zakharkina T, Heinzel E, Koczulla RA, et al. Analysis of the airway microbiota of healthy individuals and patients with chronic obstructive pulmonary disease by T-RFLP and clone sequencing. PLoS One 2013;8:e68302. [PubMed]
    • (2013) PLoS One , vol.8
    • Zakharkina, T.1    Heinzel, E.2    Koczulla, R.A.3
  • 17
    • 84903815893 scopus 로고    scopus 로고
    • Bronchial microbiome of severe COPD patients colonised by Pseudomonas aeruginosa
    • [PubMed]
    • Millares L, Ferrari R, Gallego M, et al. Bronchial microbiome of severe COPD patients colonised by Pseudomonas aeruginosa. Eur J Clin Microbiol Infect Dis 2014;33:1101-11. [PubMed]
    • (2014) Eur J Clin Microbiol Infect Dis , vol.33 , pp. 1101-1111
    • Millares, L.1    Ferrari, R.2    Gallego, M.3
  • 18
    • 77049098120 scopus 로고    scopus 로고
    • A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations
    • [PubMed]
    • Huang YJ, Kim E, Cox MJ, et al. A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations. OMICS 2010;14:9-59. [PubMed]
    • (2010) OMICS , vol.14 , pp. 9-59
    • Huang, Y.J.1    Kim, E.2    Cox, M.J.3
  • 19
    • 84905217349 scopus 로고    scopus 로고
    • Airway microbiome dynamics in exacerbations of chronic obstructive pulmonary disease
    • [PubMed]
    • Huang YJ, Sethi S, Murphy T, et al. Airway microbiome dynamics in exacerbations of chronic obstructive pulmonary disease. J Clin Microbiol 2014;52:2813-23. [PubMed]
    • (2014) J Clin Microbiol , vol.52 , pp. 2813-2823
    • Huang, Y.J.1    Sethi, S.2    Murphy, T.3
  • 20
    • 33645053487 scopus 로고    scopus 로고
    • COPD exacerbations. 2: aetiology
    • [PubMed]
    • Sapey E, Stockley RA. COPD exacerbations. 2: aetiology. Thorax 2006;61:250-8. [PubMed]
    • (2006) Thorax , vol.61 , pp. 250-258
    • Sapey, E.1    Stockley, R.A.2
  • 21
    • 84875224340 scopus 로고    scopus 로고
    • A new short-term mouse model of chronic obstructive pulmonary disease identifies a role for mast cell tryptase in pathogenesis
    • [PubMed]
    • Beckett EL, Stevens RL, Jarnicki AG, et al. A new short-term mouse model of chronic obstructive pulmonary disease identifies a role for mast cell tryptase in pathogenesis. J Allergy Clin Immunol 2013;131:752-62. [PubMed]
    • (2013) J Allergy Clin Immunol , vol.131 , pp. 752-762
    • Beckett, E.L.1    Stevens, R.L.2    Jarnicki, A.G.3
  • 22
    • 84904692363 scopus 로고    scopus 로고
    • The adaptor ASC has extracellular and 'prionoid' activities that propagate inflammation
    • [PubMed]
    • Franklin BS, Bossaller L, De Nardo D, et al. The adaptor ASC has extracellular and 'prionoid' activities that propagate inflammation. Nat Immunol 2014;15:727-37. [PubMed]
    • (2014) Nat Immunol , vol.15 , pp. 727-737
    • Franklin, B.S.1    Bossaller, L.2    De Nardo, D.3
  • 23
    • 84879096032 scopus 로고    scopus 로고
    • Murine models of infectious exacerbations of airway inflammation
    • [PubMed]
    • Starkey MR, Jarnicki AG, Essilfie AT, et al. Murine models of infectious exacerbations of airway inflammation. Curr Opin Pharmacol 2013;13:337-44. [PubMed]
    • (2013) Curr Opin Pharmacol , vol.13 , pp. 337-344
    • Starkey, M.R.1    Jarnicki, A.G.2    Essilfie, A.T.3
  • 24
    • 84903516573 scopus 로고    scopus 로고
    • Importance of mast cell Prss31/transmembrane tryptase/tryptase-? in lung function and experimental chronic obstructive pulmonary disease and colitis
    • [PubMed]
    • Hansbro PM, Hamilton MJ, Fricker M, et al. Importance of mast cell Prss31/transmembrane tryptase/tryptase-? in lung function and experimental chronic obstructive pulmonary disease and colitis. J Biol Chem 2014;289:18214-27. [PubMed]
    • (2014) J Biol Chem , vol.289 , pp. 18214-18227
    • Hansbro, P.M.1    Hamilton, M.J.2    Fricker, M.3
  • 25
    • 84885766455 scopus 로고    scopus 로고
    • Inhaled corticosteroids in COPD and the risk of serious pneumonia
    • [PubMed]
    • Suissa S, Patenaude V, Lapi F, et al. Inhaled corticosteroids in COPD and the risk of serious pneumonia. Thorax 2013;68:1029-36. [PubMed]
    • (2013) Thorax , vol.68 , pp. 1029-1036
    • Suissa, S.1    Patenaude, V.2    Lapi, F.3
  • 26
    • 33847172367 scopus 로고    scopus 로고
    • Salmeterol and fluticasone propionate and survival in chronic obstructive pulmonary disease
    • [PubMed]
    • Calverley PM, Anderson JA, Celli B, et al. Salmeterol and fluticasone propionate and survival in chronic obstructive pulmonary disease. N Engl J Med 2007;356:775-89. [PubMed]
    • (2007) N Engl J Med , vol.356 , pp. 775-789
    • Calverley, P.M.1    Anderson, J.A.2    Celli, B.3
  • 27
    • 57149105188 scopus 로고    scopus 로고
    • Infection in the pathogenesis and course of chronic obstructive pulmonary disease
    • [PubMed]
    • Sethi S, Murphy TF. Infection in the pathogenesis and course of chronic obstructive pulmonary disease. N Engl J Med 2008;359:2355-65. [PubMed]
    • (2008) N Engl J Med , vol.359 , pp. 2355-2365
    • Sethi, S.1    Murphy, T.F.2
  • 28
    • 84857538593 scopus 로고    scopus 로고
    • Disease tolerance as a defense strategy
    • [PubMed]
    • Medzhitov R, Schneider DS, Soares MP. Disease tolerance as a defense strategy. Science 2012;335:936-41. [PubMed]
    • (2012) Science , vol.335 , pp. 936-941
    • Medzhitov, R.1    Schneider, D.S.2    Soares, M.P.3
  • 29
    • 79959558906 scopus 로고    scopus 로고
    • Endotoxin tolerance represents a distinctive state of alternative polarization (M2) in human mononuclear cells
    • [PubMed]
    • Pena OM, Pistolic J, Raj D, et al. Endotoxin tolerance represents a distinctive state of alternative polarization (M2) in human mononuclear cells. J Immunol 2011;186:7243-54. [PubMed]
    • (2011) J Immunol , vol.186 , pp. 7243-7254
    • Pena, O.M.1    Pistolic, J.2    Raj, D.3
  • 30
    • 84866841728 scopus 로고    scopus 로고
    • The adult cystic fibrosis airway microbiota is stable over time and infection type, and highly resilient to antibiotic treatment of exacerbations
    • [PubMed]
    • Fodor AA, Klem ER, Gilpin DF, et al. The adult cystic fibrosis airway microbiota is stable over time and infection type, and highly resilient to antibiotic treatment of exacerbations. PLoS One 2012;7:e45001. [PubMed]
    • (2012) PLoS One , vol.7
    • Fodor, A.A.1    Klem, E.R.2    Gilpin, D.F.3
  • 31
    • 80052450195 scopus 로고    scopus 로고
    • Does bacterial density in cystic fibrosis sputum increase prior to pulmonary exacerbation?
    • [PubMed]
    • Stressmann FA, Rogers GB, Marsh P, et al. Does bacterial density in cystic fibrosis sputum increase prior to pulmonary exacerbation? J Cyst Fibros 2011;10:357-65. [PubMed]
    • (2011) J Cyst Fibros , vol.10 , pp. 357-365
    • Stressmann, F.A.1    Rogers, G.B.2    Marsh, P.3
  • 32
    • 84859576702 scopus 로고    scopus 로고
    • Decade-long bacterial community dynamics in cystic fibrosis airways
    • [PubMed]
    • Zhao J, Schloss PD, Kalikin LM, et al. Decade-long bacterial community dynamics in cystic fibrosis airways. Proc Natl Acad Sci U S A 2012;109:5809-14. [PubMed]
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 5809-5814
    • Zhao, J.1    Schloss, P.D.2    Kalikin, L.M.3
  • 33
    • 40849116368 scopus 로고    scopus 로고
    • Airway infection in stable lung transplant patients is associated with decreased intracellular T-helper type 1 pro-inflammatory cytokines in bronchoalveolar lavage T-cell subsets
    • [PubMed]
    • Hodge G, Hodge S, Reynolds PN, et al. Airway infection in stable lung transplant patients is associated with decreased intracellular T-helper type 1 pro-inflammatory cytokines in bronchoalveolar lavage T-cell subsets. Transpl Infect Dis 2008;10:99-105. [PubMed]
    • (2008) Transpl Infect Dis , vol.10 , pp. 99-105
    • Hodge, G.1    Hodge, S.2    Reynolds, P.N.3
  • 34
    • 84875148797 scopus 로고    scopus 로고
    • Reestablishment of recipient-associated microbiota in the lung allograft is linked to reduced risk of bronchiolitis obliterans syndrome
    • [PubMed]
    • Willner DL, Hugenholtz P, Yerkovich ST, et al. Reestablishment of recipient-associated microbiota in the lung allograft is linked to reduced risk of bronchiolitis obliterans syndrome. Am J Respir Crit Care Med 2013;187:640-7. [PubMed]
    • (2013) Am J Respir Crit Care Med , vol.187 , pp. 640-647
    • Willner, D.L.1    Hugenholtz, P.2    Yerkovich, S.T.3
  • 35
    • 0037396889 scopus 로고    scopus 로고
    • Antimicrobial growth promoters used in animal feed: effects of less well known antibiotics on gram-positive bacteria
    • [PubMed]
    • Butaye P, Devriese LA, Haesebrouck F. Antimicrobial growth promoters used in animal feed: effects of less well known antibiotics on gram-positive bacteria. Clin Microbiol Rev 2003;16:175-88. [PubMed]
    • (2003) Clin Microbiol Rev , vol.16 , pp. 175-188
    • Butaye, P.1    Devriese, L.A.2    Haesebrouck, F.3
  • 36
    • 84865477413 scopus 로고    scopus 로고
    • Antibiotics in early life alter the murine colonic microbiome and adiposity
    • [PubMed]
    • Cho I, Yamanishi S, Cox L, et al. Antibiotics in early life alter the murine colonic microbiome and adiposity. Nature 2012;488:621-6. [PubMed]
    • (2012) Nature , vol.488 , pp. 621-626
    • Cho, I.1    Yamanishi, S.2    Cox, L.3
  • 37
    • 84873019660 scopus 로고    scopus 로고
    • Antibiotics as part of the management of severe acute malnutrition
    • [PubMed]
    • Trehan I, Goldbach HS, LaGrone LN, et al. Antibiotics as part of the management of severe acute malnutrition. N Engl J Med 2013;368:425-35. [PubMed]
    • (2013) N Engl J Med , vol.368 , pp. 425-435
    • Trehan, I.1    Goldbach, H.S.2    LaGrone, L.N.3
  • 38
    • 84866168894 scopus 로고    scopus 로고
    • Functional interactions between the gut microbiota and host metabolism
    • [PubMed]
    • Tremaroli V, Bäckhed F. Functional interactions between the gut microbiota and host metabolism. Nature 2012;489:242-9. [PubMed]
    • (2012) Nature , vol.489 , pp. 242-249
    • Tremaroli, V.1    Bäckhed, F.2
  • 39
    • 84907486084 scopus 로고    scopus 로고
    • The contributory role of gut microbiota in cardiovascular disease
    • [PubMed]
    • Tang WH, Hazen SL. The contributory role of gut microbiota in cardiovascular disease. J Clin Invest 2014;124:4204-11. [PubMed]
    • (2014) J Clin Invest , vol.124 , pp. 4204-4211
    • Tang, W.H.1    Hazen, S.L.2
  • 40
    • 79955121049 scopus 로고    scopus 로고
    • Microbiota regulates immune defense against respiratory tract influenza A virus infection
    • [PubMed]
    • Ichinohe T, Pang IK, Kumamoto Y, et al. Microbiota regulates immune defense against respiratory tract influenza A virus infection. Proc Natl Acad Sci U S A 2011;108:5354-9. [PubMed]
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 5354-5359
    • Ichinohe, T.1    Pang, I.K.2    Kumamoto, Y.3
  • 41
    • 84860436361 scopus 로고    scopus 로고
    • Early life antibiotic-driven changes in microbiota enhance susceptibility to allergic asthma
    • [PubMed]
    • Russell SL, Gold MJ, Hartmann M, et al. Early life antibiotic-driven changes in microbiota enhance susceptibility to allergic asthma. EMBO Rep 2012;13:440-7. [PubMed]
    • (2012) EMBO Rep , vol.13 , pp. 440-447
    • Russell, S.L.1    Gold, M.J.2    Hartmann, M.3
  • 42
    • 84899518070 scopus 로고    scopus 로고
    • Consequences of antibiotics and infections in infancy: bugs, drugs, and wheezing
    • Ong MS, Umetsu DT, Mandl KD. Consequences of antibiotics and infections in infancy: bugs, drugs, and wheezing. Ann Allergy Asthma Immunol 2014;112:441-445.e1.
    • (2014) Ann Allergy Asthma Immunol , vol.112 , pp. 441-445.e1
    • Ong, M.S.1    Umetsu, D.T.2    Mandl, K.D.3
  • 43
    • 9244261570 scopus 로고    scopus 로고
    • Inflammatory bowel disease and smoking: a review of epidemiology, pathophysiology, and therapeutic implications
    • [PubMed]
    • Birrenbach T, Böcker U. Inflammatory bowel disease and smoking: a review of epidemiology, pathophysiology, and therapeutic implications. Inflamm Bowel Dis 2004;10:848-59. [PubMed]
    • (2004) Inflamm Bowel Dis , vol.10 , pp. 848-859
    • Birrenbach, T.1    Böcker, U.2
  • 44
    • 44449179986 scopus 로고    scopus 로고
    • Increased risk of both ulcerative colitis and Crohn's disease in a population suffering from COPD
    • [PubMed]
    • Ekbom A, Brandt L, Granath F, et al. Increased risk of both ulcerative colitis and Crohn's disease in a population suffering from COPD. Lung 2008;186:167-72. [PubMed]
    • (2008) Lung , vol.186 , pp. 167-172
    • Ekbom, A.1    Brandt, L.2    Granath, F.3
  • 45
    • 83655181133 scopus 로고    scopus 로고
    • Pulmonary-intestinal cross-talk in mucosal inflammatory disease
    • [PubMed]
    • Keely S, Talley NJ, Hansbro PM. Pulmonary-intestinal cross-talk in mucosal inflammatory disease. Mucosal Immunol 2012;5:7-18. [PubMed]
    • (2012) Mucosal Immunol , vol.5 , pp. 7-18
    • Keely, S.1    Talley, N.J.2    Hansbro, P.M.3
  • 46
    • 84875047451 scopus 로고    scopus 로고
    • Smoking cessation induces profound changes in the composition of the intestinal microbiota in humans
    • [PubMed]
    • Biedermann L, Zeitz J, Mwinyi J, et al. Smoking cessation induces profound changes in the composition of the intestinal microbiota in humans. PLoS One 2013;8:e59260. [PubMed]
    • (2013) PLoS One , vol.8
    • Biedermann, L.1    Zeitz, J.2    Mwinyi, J.3
  • 47
    • 0024595711 scopus 로고
    • Quantitative bacterial cultures of bronchoalveolar lavage fluids and protected brush catheter specimens from normal subjects
    • [PubMed]
    • Kirkpatrick MB, Bass JB Jr. Quantitative bacterial cultures of bronchoalveolar lavage fluids and protected brush catheter specimens from normal subjects. Am Rev Respir Dis 1989;139:546-8. [PubMed]
    • (1989) Am Rev Respir Dis , vol.139 , pp. 546-548
    • Kirkpatrick, M.B.1    Bass Jr, J.B.2
  • 48
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • [PubMed]
    • Lander ES, Linton LM, Birren B, et al. Initial sequencing and analysis of the human genome. Nature 2001;409:860-921. [PubMed]
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1    Linton, L.M.2    Birren, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.