Overexpression of NAC gene from Lepidium latifolium L. enhances biomass, shortens life cycle and induces cold stress tolerance in tobacco: potential for engineering fourth generation biofuel crops

Molecular Biology Reports

Volumn 41, Issue 11, 2014, Pages 7479-7489

  Grover, Atul ^a   Singh, Sadhana ^a   Pandey, Pankaj ^a,b   Patade, Vikas Yadav ^a   Gupta, Sanjay Mohan ^a   Nasim, M ^a  

^a Defence Institute of Bio Energy Research   (India)

^b NATIONAL AGRI FOOD BIOTECHNOLOGY INSTITUTE   (India)

Author keywords

Biomass; Flowering; Lepidium latifolium L; NAC; Nicotiana tabacum; Overexpression

Indexed keywords

ARTICLE; BIOENGINEERING; BIOMASS; COLD STRESS; CONTROLLED STUDY; DRY WEIGHT; ENERGY CROP; FRESH WEIGHT; GENE EXPRESSION PROFILING; GENE ISOLATION; LEPIDIUM; LEPIDIUM LATIFOLIUM; NAC GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENE; PLANT LEAF; PLANT ROOT; PLANT TISSUE; TOBACCO; ACCLIMATIZATION; COLD; GENE EXPRESSION REGULATION; GENETIC ENGINEERING; GENETIC TRANSFORMATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; LIFE CYCLE STAGE; METABOLISM; PHYSIOLOGY; PROCEDURES;

LEPIDIUM LATIFOLIUM; NICOTIANA OBTUSIFOLIA; NICOTIANA TABACUM;

BIOFUEL; VEGETABLE PROTEIN;

ACCLIMATIZATION; BIOFUELS; BIOMASS; COLD TEMPERATURE; GENE EXPRESSION REGULATION, PLANT; GENETIC ENGINEERING; LEPIDIUM; LIFE CYCLE STAGES; PLANT PROTEINS; TOBACCO; TRANSFORMATION, GENETIC;

EID: 84917689340     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-014-3638-z     Document Type: Article

References (45)

1. Zhu XG, Long SP, Ort DR (2008) What is the maximum efficiency with which photosynthesis can convert solar energy into biomass? Curr Opin Biotechnol 19:153–159
2. Wilhelm WW, Johnson JMF, Karlen DL, Lightle DT (2007) Corn stover to sustain soil organic carbon further constrains biomass supply. Agron J 99:1665–1667
3. Demura T, Ye Z-H (2010) Regulation of plant biomass production. Curr Opin Plant Biol 13:299–304
4. Grover A, Patade VY, Kumari M, Gupta SM, Arif M, Ahmed Z (2013) Omics approaches in biofuel production for a green environment. In: Barh D, Zambare V, Azevedo V (eds) OMICS: applications in biomedical, agricultural, and environmental sciences. CRC Press, Taylor and Francis Group, Boca Raton, pp 623–636
5. Hisano H, Nandakumar R, Wang Z-Y (2009) Genetic modification of lignin biosynthesis for improved biofuel production. In Vitro Cell Dev Biol Plant 45:306–313
6. Shen H, Yin Y, Chen F, Xu Y, Dixon RA (2009) A bioinformatic analysis of NAC genes for plant cell wall development in relation to lignocellulosic bioenergy production. Bioenergy Res 2:217–232
7. Chen F, Dixon RA (2007) Lignin modification improves fermentable sugar yields for biofuel production. Nat Biotechnol 25:759–761
8. He X-J, Mu R-L, Cao W-H, Zhang Z-G, Zhang J-S, Chen S-Y (2005) AtNAC2, a transcription factor downstream of ethylene and auxin signalling pathways, is involved in salt stress response and lateral root development. Plant J 44:903–916
9. Shan W, Kuang J-F, Chen L, Xie H et al (2012) Molecular characterization of banana NAC transcription factors and their interactions with ethylene signalling component EIL during fruit ripening. J Exp Bot 63:5171–5187
10. Puranik S, Sahu PP, Srivastava PS, Prasad M (2012) NAC proteins: regulation and role in stress tolerance. Trends Plant Sci 17:369–381
11. Ooka H, Satoh K, Doi K et al (2003) Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. DNA Res 10:239–247
12. Fang Y, You J, Xie K, Xie W, Xiong L (2008) Systematic sequence analysis and identification of tissue specific or stress responsive genes of NAC transcription factor family in rice. Mol Genet Genomics 280:547–563
13. Tran L-SP, Quach TN, Guttikonda SK, Aldrich DL, Kumar R, Neelakandan A, Valliyodan B, Nguyen T (2009) Molecular characterization of stress-inducible GmNAC genes in soybean. Mol Genet Genomics 281:647–664
14. Ma J, Wang F, Li M-Y, Jiang Q, Tan G-F, Xiong A-S (2014) Genome wide analysis of the NAC transcription factor family in Chinese cabbage to elucidate responses to temperature stress. Sci Hortic 165:82–90
15. Puranik S, Sahu PP, Mandal SN, Suresh BV, Parida SK, Prasad M (2013) Comprehensive genome-wide survey, genomic constitution and expression profiling of the NAC transcription factor family in foxtail millet (Setaria italica L.). PLoS One 8:e64594
16. Puranik S, Bahadur RP, Srivastava PS, Prasad M (2011) Molecular cloning and characterization of a membrane associated NAC family gene, SiNAC from foxtail millet [Setaria italica (L.) P. Beauv.]. Mol Biotechnol 49:138–150
17. Puranik S, Kumar K, Srivastava PS, Prasad M (2011) Electrophoretic mobility shift assay reveals a novel recognition sequence for Setaria italica NAC protein. Plant Signal Behav 6:10
18. Kikuchi K, Ueguchi-Tanaka M, Yoshida KT, Nagato Y, Matsusoka M, Hirano HY (2000) Molecular analysis of the NAC gene family in rice. Mol Genet Genomics 262:1047–1051
19. Kim S-Y, Kim S-G, Kim Y-S, Seo PJ, Bae M, Yoon H-K, Park C-M (2007) Exploring membrance-associated NAC transcription factors in Arabidopsis: implications for membrane biology in genome regulation. Nucleic Acids Res 35:203–213
20. Hao Y-J, Wei W, Song Q-X et al (2011) Soybean NAC transcription factors promote abiotic stress tolerance and lateral root formation in transgenic plants. Plant J 68:302–313
21. Yamaguchi M, Demura T (2010) Transcriptional regulation of secondary wall formation controlled by NAC domain proteins. Plant Biotechnol 27:237–242
22. Zhong R, Lee C, Ye Z-H (2010) Functional characterization of poplar wood associated NAC domain transcription factors. Plant Physiol 152:1044–1055
23. Zhong R, Ye Z-H (2012) MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368–380
24. Aslam M, Grover A, Sinha VB, Fakher B, Pande V, Patade PV, Gupta SM, Anandhan S, Ahmed Z (2012) Isolation and characterization of cold responsive NAC gene from Lepidium latifolium. Mol Biol Rep 39:9629–9638
25. Shamimuzzaman M, Vodkin L (2013) Genome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq. BMC Genomics 14:477
26. Hussey SG, Mizrachi E, Spokevicius AV, Bossinger G, Berger DK, Myburg AA (2011) SND2, a NAC transcription factor gene regulates genes involved in secondary cell wall development in Arabidopsis fibres and increases fibre cell area in Eucalyptus. BMC Plant Biol 11:173
27. Valdivia ER, Herrera MT, Gianzo C, Fidalgo J, Revilla G, Zarra I, Sampedro J (2013) Regulation of secondary wall synthesis and cell death by NAC transcription factors in the monocot Brachypodium distachyon. J Exp Bot 64:1333–1343
28. Torbert KA, Rines HW, Somers DA (1995) Use of paromomycin as a selective agent for oat transformation. Plant Cell Rep 14:635–640
29. Patade VY, Khatri D, Kumar K, Grover A, Kumari M, Gupta SM, Kumar D, Nasim M (2014) RNAi mediated curcin precursor gene silencing in Jatropha (Jatropha curcas L.). Mol Biol Rep 41:4305–4312
30. Pandey SK, Singh H (2011) A simple, cost-effective method for leaf area estimation. J Bot 2011:658240
31. −ΔΔCT method. Methods 25:402–408
32. Zimmermann P, Laule O, Schmitz J, Hruz T, Bleuler S, Gruissem W (2008) Genevestigator transcriptome MetaAnalysis and biomarker search using rice and barley gene expression databases. Mol Plant 5:851–857
33. Olsen AN, Ernst HA, Lo LL, Skriver K (2005) DNA-binding specificity and molecular functions of NAC transcription factors. Plant Sci 169:785–797
34. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410
35. Rhee SY, Beavis W, Beradini TZ et al (2003) The Arabidopsis information resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res 31:224–228
36. Conesa A, Gotz S (2008) Blast2GO: a comprehensive suite for functional analysis in plant genomics. Int J Plant Genomics 2008:L619832
37. Hruz T, Laule O, Szabo G, Wessendrop F, Bleuler S, Oertle L, Widmayer V, Gruissem W, Zimmermann P (2008) Genevestigator V3: A reference expression database for the meta-analysis of transcriptomes. Adv Bioinform 2008:420747
38. Ko JH, Yang SH, Park AH, Lerouxel O, Han KH (2007) ANAC012, a member of the plant-specific NAC transcription factor family, negatively regulates xylary fiber development in Arabidopsis thaliana. Plant J 50:1035–1048
39. Mitsuda N, Iwase A, Yamamoto H, Yoshida M, Seki M, Shinozaki K, Ohme-Takagi M (2007) NAC transcription factors, NST1 and NST3, are key regulators of the formation of secondary walls in woody tissues of Arabidopsis. Plant Cell 19:270–280
40. Baek I-J, Seo D-S, Yon J-M et al (2007) Tissue expression and cellular localization of phospholipid hydroperoxide glutathione peroxidase (PHGPx) mRNA in male mice. J Mol Histol 38:237–244
41. Rahimizadeh M, Habibi D, Madani H, Mohammadi GN, Mehraban A, Sabet AM (2007) The effect of micronutrients on antioxidant enzymes metabolism in sunflower (Helianthusannuus L.) under drought stress. Helia 30:167–173
42. Mitsuda N, Ohme-Takagi M (2008) NAC transcription factors NST1 and NST3 regulate pod shattering in a partially redundant manner by promoting secondary wall formation after the establishment of tissue identity. Plant J 56:768–778
43. Bennett T, van den Toom A, Sanchez-Perez GF, Campilho A, Willemsen V, Snel B, Scheres B (2010) SOMBERO, BEARSKIN1, and BEARSKIN2 regulate root cap maturation in Arabidopsis. Plant Cell 22:640–654
44. Karp A, Shield I (2008) Bioenergy from plants and the sustainable yield challenge. New Phytol 179:15–32
45. Grover A, Patade VY, Kumari M, Gupta SM, Arif M, Ahmed Z (2013) Bioenergy crops enter into the omics era. In: Barh D (ed) Omics applications in crop science. CRC Press, Taylor & Francis LLC, pp 549–561