-
1
-
-
67849122320
-
MEME SUITE: tools for motif discovery and searching
-
Bailey T.L., Boden M., Buske F.A., Frith M., Grant C.E., Clementi L., Ren J., Li W.W., Noble W.S. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 2009, 37:W202-W208.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
Clementi, L.6
Ren, J.7
Li, W.W.8
Noble, W.S.9
-
2
-
-
2942620598
-
The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana
-
Cannon S.B., Mitra A., Baumgarten A., Young N.D., May G. The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol. 2004, 4:10.
-
(2004)
BMC Plant Biol.
, vol.4
, pp. 10
-
-
Cannon, S.B.1
Mitra, A.2
Baumgarten, A.3
Young, N.D.4
May, G.5
-
3
-
-
0034625265
-
Endless forms: the evolution of gene regulation and morphological diversity
-
Carroll S.B. Endless forms: the evolution of gene regulation and morphological diversity. Cell 2000, 101:577-580.
-
(2000)
Cell
, vol.101
, pp. 577-580
-
-
Carroll, S.B.1
-
4
-
-
80053914535
-
BRAD, the genetics and genomics database for Brassica plants
-
Cheng F., Liu S., Wu J., Fang L., Sun S., Liu B., Li P., Hua W., Wang X. BRAD, the genetics and genomics database for Brassica plants. BMC Plant Biol. 2011, 11:136.
-
(2011)
BMC Plant Biol.
, vol.11
, pp. 136
-
-
Cheng, F.1
Liu, S.2
Wu, J.3
Fang, L.4
Sun, S.5
Liu, B.6
Li, P.7
Hua, W.8
Wang, X.9
-
5
-
-
84888771799
-
Syntenic gene analysis between Brassica rapa and other Brassicaceae species
-
Cheng F., Wu J., Fang L., Wang X. Syntenic gene analysis between Brassica rapa and other Brassicaceae species. Front. Plant Sci. 2012, 3.
-
(2012)
Front. Plant Sci.
, pp. 3
-
-
Cheng, F.1
Wu, J.2
Fang, L.3
Wang, X.4
-
6
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
Chenna R., Sugawara H., Koike T., Lopez R., Gibson T.J., Higgins D.G., Thompson J.D. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 2003, 31:3497-3500.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.J.5
Higgins, D.G.6
Thompson, J.D.7
-
7
-
-
0034903865
-
Differential induction of two potato genes, Stprx2 and StNAC, in response to infection by Phytophthora infestans and to wounding
-
Collinge M., Boller T. Differential induction of two potato genes, Stprx2 and StNAC, in response to infection by Phytophthora infestans and to wounding. Plant Mol. Biol. 2001, 46:521-529.
-
(2001)
Plant Mol. Biol.
, vol.46
, pp. 521-529
-
-
Collinge, M.1
Boller, T.2
-
8
-
-
29944434339
-
The transcription factor ATAF2 represses the expression of pathogenesis-related genes in Arabidopsis
-
Delessert C., Kazan K., Wilson I.W., Straeten D.V.D., Manners J., Dennis E.S., Dolferus R. The transcription factor ATAF2 represses the expression of pathogenesis-related genes in Arabidopsis. Plant J. 2005, 43:745-757.
-
(2005)
Plant J.
, vol.43
, pp. 745-757
-
-
Delessert, C.1
Kazan, K.2
Wilson, I.W.3
Straeten, D.V.D.4
Manners, J.5
Dennis, E.S.6
Dolferus, R.7
-
9
-
-
56449090054
-
Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice
-
Fang Y., You J., Xie K., Xie W., Xiong L. Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice. Mol. Genet. Genomics 2008, 280:547-563.
-
(2008)
Mol. Genet. Genomics
, vol.280
, pp. 547-563
-
-
Fang, Y.1
You, J.2
Xie, K.3
Xie, W.4
Xiong, L.5
-
10
-
-
4944243432
-
A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway
-
Fujita M., Fujita Y., Maruyama K., Seki M., Hiratsu K., Ohme-Takagi M., Tran L.S.P., Yamaguchi-Shinozaki K., Shinozaki K. A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway. Plant J. 2004, 39:863-876.
-
(2004)
Plant J.
, vol.39
, pp. 863-876
-
-
Fujita, M.1
Fujita, Y.2
Maruyama, K.3
Seki, M.4
Hiratsu, K.5
Ohme-Takagi, M.6
Tran, L.S.P.7
Yamaguchi-Shinozaki, K.8
Shinozaki, K.9
-
11
-
-
84872483140
-
Genome-wide analysis of the AP2/ERF superfamily in apple and transcriptional evidence of ERF involvement in scab pathogenesis
-
Girardi C.L., Rombaldi C.V., Dal Cero J., Nobile P.M., Laurens F., Bouzayen M., Quecini V. Genome-wide analysis of the AP2/ERF superfamily in apple and transcriptional evidence of ERF involvement in scab pathogenesis. Sci. Hortic. 2013, 151:112-121.
-
(2013)
Sci. Hortic.
, vol.151
, pp. 112-121
-
-
Girardi, C.L.1
Rombaldi, C.V.2
Dal Cero, J.3
Nobile, P.M.4
Laurens, F.5
Bouzayen, M.6
Quecini, V.7
-
12
-
-
0347930304
-
Molecular characterization of Brassicanapus NAC domain transcriptional activators induced in response to biotic and abiotic stress
-
Hegedus D., Yu M., Baldwin D., Gruber M., Sharpe A., Parkin I., Whitwill S., Lydiate D. Molecular characterization of Brassicanapus NAC domain transcriptional activators induced in response to biotic and abiotic stress. Plant Mol. Biol. 2003, 53:383-397.
-
(2003)
Plant Mol. Biol.
, vol.53
, pp. 383-397
-
-
Hegedus, D.1
Yu, M.2
Baldwin, D.3
Gruber, M.4
Sharpe, A.5
Parkin, I.6
Whitwill, S.7
Lydiate, D.8
-
13
-
-
33748364557
-
Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice
-
Hu H., Dai M., Yao J., Xiao B., Li X., Zhang Q., Xiong L. Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:12987-12992.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 12987-12992
-
-
Hu, H.1
Dai, M.2
Yao, J.3
Xiao, B.4
Li, X.5
Zhang, Q.6
Xiong, L.7
-
14
-
-
0037446860
-
What happens to genes in duplicated genomes
-
Kellogg E.A. What happens to genes in duplicated genomes. Proc. Natl. Acad. Sci. U. S. A. 2003, 100:4369-4371.
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 4369-4371
-
-
Kellogg, E.A.1
-
15
-
-
84880822353
-
Genome-wide analysis of the distribution of AP2/ERF transcription factors reveals duplication and elucidates their potential function in Chinese Cabbage (Brassica rapa ssp. pekinensis)
-
Li M.Y., Wang F., Jiang Q., Li R., Ma J., Xiong A.-S. Genome-wide analysis of the distribution of AP2/ERF transcription factors reveals duplication and elucidates their potential function in Chinese Cabbage (Brassica rapa ssp. pekinensis). Plant Mol. Biol. Rep. 2013, 31:1002-1011.
-
(2013)
Plant Mol. Biol. Rep.
, vol.31
, pp. 1002-1011
-
-
Li, M.Y.1
Wang, F.2
Jiang, Q.3
Li, R.4
Ma, J.5
Xiong, A.-S.6
-
16
-
-
33846065315
-
A novel drought-inducible gene, ATAF1, encodes a NAC family protein that negatively regulates the expression of stress-responsive genes in Arabidopsis
-
Lu P.L., Chen N.Z., An R., Su Z., Qi B.S., Ren F., Chen J., Wang X.C. A novel drought-inducible gene, ATAF1, encodes a NAC family protein that negatively regulates the expression of stress-responsive genes in Arabidopsis. Plant Mol. Biol. 2007, 63:289-305.
-
(2007)
Plant Mol. Biol.
, vol.63
, pp. 289-305
-
-
Lu, P.L.1
Chen, N.Z.2
An, R.3
Su, Z.4
Qi, B.S.5
Ren, F.6
Chen, J.7
Wang, X.C.8
-
18
-
-
75249102751
-
In silico analysis of transcription factor repertoire and prediction of stress responsive transcription factors in soybean
-
Mochida K., Yoshida T., Sakurai T., Yamaguchi-Shinozaki K., Shinozaki K., Tran L.S.P. In silico analysis of transcription factor repertoire and prediction of stress responsive transcription factors in soybean. DNA Res. 2009, 16:353-369.
-
(2009)
DNA Res.
, vol.16
, pp. 353-369
-
-
Mochida, K.1
Yoshida, T.2
Sakurai, T.3
Yamaguchi-Shinozaki, K.4
Shinozaki, K.5
Tran, L.S.P.6
-
20
-
-
14744269229
-
The evolutionary dynamics of plant duplicate genes
-
Moore R.C., Purugganan M.D. The evolutionary dynamics of plant duplicate genes. Curr. Opin. Plant Biol. 2005, 8:122-128.
-
(2005)
Curr. Opin. Plant Biol.
, vol.8
, pp. 122-128
-
-
Moore, R.C.1
Purugganan, M.D.2
-
21
-
-
84856594358
-
NAC transcription factors in plant abiotic stress responses
-
Nakashima K., Takasaki H., Mizoi J., Shinozaki K., Yamaguchi-Shinozaki K. NAC transcription factors in plant abiotic stress responses. Biochim. Biophys. Acta 2012, 1819:97-103.
-
(2012)
Biochim. Biophys. Acta
, vol.1819
, pp. 97-103
-
-
Nakashima, K.1
Takasaki, H.2
Mizoi, J.3
Shinozaki, K.4
Yamaguchi-Shinozaki, K.5
-
22
-
-
84885415215
-
Roles of NAC transcription factors in the regulation of biotic and abiotic stress responses in plants
-
Nuruzzaman M., Sharoni A.M., Kikuchi S. Roles of NAC transcription factors in the regulation of biotic and abiotic stress responses in plants. Front. Microbiol. 2013, 4:248.
-
(2013)
Front. Microbiol.
, vol.4
, pp. 248
-
-
Nuruzzaman, M.1
Sharoni, A.M.2
Kikuchi, S.3
-
23
-
-
13744249762
-
NAC transcription factors: structurally distinct, functionally diverse
-
Olsen A.N., Ernst H.A., Leggio L.L., Skriver K. NAC transcription factors: structurally distinct, functionally diverse. Trends Plant Sci. 2005, 10:79-87.
-
(2005)
Trends Plant Sci.
, vol.10
, pp. 79-87
-
-
Olsen, A.N.1
Ernst, H.A.2
Leggio, L.L.3
Skriver, K.4
-
24
-
-
10744233719
-
Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana
-
Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K., Osato N., Kawai J., Carninci P. Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. DNA Res. 2003, 10:239-247.
-
(2003)
DNA Res.
, vol.10
, pp. 239-247
-
-
Ooka, H.1
Satoh, K.2
Doi, K.3
Nagata, T.4
Otomo, Y.5
Murakami, K.6
Matsubara, K.7
Osato, N.8
Kawai, J.9
Carninci, P.10
-
25
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl M.W. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 2001, 29:e45.
-
(2001)
Nucleic Acids Res.
, vol.29
-
-
Pfaffl, M.W.1
-
26
-
-
77954424658
-
Reference gene selection for real-time quantitative polymerase chain reaction of mRNA Transcript levels in Chinese Cabbage (Brassica rapa L. ssp. pekinensis)
-
Qi J., Yu S., Zhang F., Shen X., Zhao X., Yu Y., Zhang D. Reference gene selection for real-time quantitative polymerase chain reaction of mRNA Transcript levels in Chinese Cabbage (Brassica rapa L. ssp. pekinensis). Plant Mol. Biol. Rep. 2010, 28:597-604.
-
(2010)
Plant Mol. Biol. Rep.
, vol.28
, pp. 597-604
-
-
Qi, J.1
Yu, S.2
Zhang, F.3
Shen, X.4
Zhao, X.5
Yu, Y.6
Zhang, D.7
-
27
-
-
0034671865
-
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes
-
Riechmann J.L. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 2000, 290:2105-2110.
-
(2000)
Science
, vol.290
, pp. 2105-2110
-
-
Riechmann, J.L.1
-
28
-
-
46249099719
-
Tobacco transcription factors: novel insights into transcriptional regulation in the Solanaceae
-
Rushton P.J., Bokowiec M.T., Han S., Zhang H., Brannock J.F., Chen X., Laudeman T.W., Timko M.P. Tobacco transcription factors: novel insights into transcriptional regulation in the Solanaceae. Plant Physiol. 2008, 147:280-295.
-
(2008)
Plant Physiol.
, vol.147
, pp. 280-295
-
-
Rushton, P.J.1
Bokowiec, M.T.2
Han, S.3
Zhang, H.4
Brannock, J.F.5
Chen, X.6
Laudeman, T.W.7
Timko, M.P.8
-
29
-
-
0032130157
-
Transcriptional control of plant genes responsive to pathogens
-
Rushton P.J., Somssich I.E. Transcriptional control of plant genes responsive to pathogens. Curr. Opin. Plant Biol. 1998, 1:311-315.
-
(1998)
Curr. Opin. Plant Biol.
, vol.1
, pp. 311-315
-
-
Rushton, P.J.1
Somssich, I.E.2
-
31
-
-
0036779396
-
Transcription factors in plant defense and stress responses
-
Singh K. Transcription factors in plant defense and stress responses. Curr. Opin. Plant Biol. 2002, 5:430-436.
-
(2002)
Curr. Opin. Plant Biol.
, vol.5
, pp. 430-436
-
-
Singh, K.1
-
32
-
-
0029960982
-
The no apical meristem gene of petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries
-
Souer E., van Houwelingen A., Kloos D., Mol J., Koes R. The no apical meristem gene of petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries. Cell 1996, 85:159-170.
-
(1996)
Cell
, vol.85
, pp. 159-170
-
-
Souer, E.1
van Houwelingen, A.2
Kloos, D.3
Mol, J.4
Koes, R.5
-
33
-
-
33750963793
-
Selection for more of the same product as a force to enhance concerted evolution of duplicated genes
-
Sugino R.P., Innan H. Selection for more of the same product as a force to enhance concerted evolution of duplicated genes. Trends Genet. 2006, 22:642-644.
-
(2006)
Trends Genet.
, vol.22
, pp. 642-644
-
-
Sugino, R.P.1
Innan, H.2
-
34
-
-
0035032744
-
The CUP-SHAPED COTYLEDON1 gene of Arabidopsis regulates shoot apical meristem formation
-
Takada S., Hibara K., Ishida T., Tasaka M. The CUP-SHAPED COTYLEDON1 gene of Arabidopsis regulates shoot apical meristem formation. Development 2001, 128:1127-1135.
-
(2001)
Development
, vol.128
, pp. 1127-1135
-
-
Takada, S.1
Hibara, K.2
Ishida, T.3
Tasaka, M.4
-
35
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
36
-
-
10944230777
-
Duplication and divergence: the evolution of new genes and old ideas
-
Taylor J.S., Raes J. Duplication and divergence: the evolution of new genes and old ideas. Annu. Rev. Genet. 2004, 38:615-643.
-
(2004)
Annu. Rev. Genet.
, vol.38
, pp. 615-643
-
-
Taylor, J.S.1
Raes, J.2
-
37
-
-
0038381027
-
The CUP-SHAPED COTYLEDON3 gene is required for boundary and shoot meristem formation in Arabidopsis
-
Vroemen C.W., Mordhorst A.P., Albrecht C., Kwaaitaal M.A.C.J., de Vries S.C. The CUP-SHAPED COTYLEDON3 gene is required for boundary and shoot meristem formation in Arabidopsis. Plant Cell 2003, 15:1563-1577.
-
(2003)
Plant Cell
, vol.15
, pp. 1563-1577
-
-
Vroemen, C.W.1
Mordhorst, A.P.2
Albrecht, C.3
Kwaaitaal, M.A.C.J.4
de Vries, S.C.5
-
38
-
-
80053386792
-
The genome of the mesopolyploid crop species Brassica rapa
-
Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.-H., Bancroft I., Cheng F. The genome of the mesopolyploid crop species Brassica rapa. Nat. Genet. 2011, 43:1035-1039.
-
(2011)
Nat. Genet.
, vol.43
, pp. 1035-1039
-
-
Wang, X.1
Wang, H.2
Wang, J.3
Sun, R.4
Wu, J.5
Liu, S.6
Bai, Y.7
Mun, J.-H.8
Bancroft, I.9
Cheng, F.10
-
39
-
-
33745944196
-
Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses
-
Yamaguchi-Shinozaki K., Shinozaki K. Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. Annu. Rev. Plant Biol. 2006, 57:781-803.
-
(2006)
Annu. Rev. Plant Biol.
, vol.57
, pp. 781-803
-
-
Yamaguchi-Shinozaki, K.1
Shinozaki, K.2
-
40
-
-
33751112491
-
Divergence of the Dof gene families in poplar, Arabidopsis, and rice suggests multiple modes of gene evolution after duplication
-
Yang X., Tuskan G.A. Divergence of the Dof gene families in poplar, Arabidopsis, and rice suggests multiple modes of gene evolution after duplication. Plant Physiol. 2006, 142:820-830.
-
(2006)
Plant Physiol.
, vol.142
, pp. 820-830
-
-
Yang, X.1
Tuskan, G.A.2
-
41
-
-
84863155771
-
Identification of rice transcription factors associated with drought tolerance using the Ecotilling method
-
Yu S., Liao F., Wang F., Wen W., Li J., Mei H., Luo L. Identification of rice transcription factors associated with drought tolerance using the Ecotilling method. PLoS ONE 2012, 7:e30765.
-
(2012)
PLoS ONE
, vol.7
-
-
Yu, S.1
Liao, F.2
Wang, F.3
Wen, W.4
Li, J.5
Mei, H.6
Luo, L.7
-
42
-
-
84888772511
-
The research and developing trend of heat-tolerance Chinese cabbage in China
-
Yuan X.H., Chu Y.P., Su X.J., Zhuang Y. The research and developing trend of heat-tolerance Chinese cabbage in China. Adv. Hortic. 1998, 2:499-506.
-
(1998)
Adv. Hortic.
, vol.2
, pp. 499-506
-
-
Yuan, X.H.1
Chu, Y.P.2
Su, X.J.3
Zhuang, Y.4
-
43
-
-
0034034336
-
Agrobacterium-mediated transformation of cotyledonary explants of Chinese cabbage (Brassica campestris L. ssp. pekinensis)
-
Zhang F.L., Takahata Y., Watanabe M., Xu J.B. Agrobacterium-mediated transformation of cotyledonary explants of Chinese cabbage (Brassica campestris L. ssp. pekinensis). Plant Cell Rep. 2000, 19:569-575.
-
(2000)
Plant Cell Rep.
, vol.19
, pp. 569-575
-
-
Zhang, F.L.1
Takahata, Y.2
Watanabe, M.3
Xu, J.B.4
-
44
-
-
84888792183
-
Research on fertilizer of autumn Chinese cabbage '87-114' based on the '3414' field experiments
-
Zhang S.X., Yang X.Y., Si C.G., Zhang Q.X., Wang Y., Sun Z.F., Wang D.S. Research on fertilizer of autumn Chinese cabbage '87-114' based on the '3414' field experiments. Chinese Agric. Sci. Bull. 2012, 28:245-248.
-
(2012)
Chinese Agric. Sci. Bull.
, vol.28
, pp. 245-248
-
-
Zhang, S.X.1
Yang, X.Y.2
Si, C.G.3
Zhang, Q.X.4
Wang, Y.5
Sun, Z.F.6
Wang, D.S.7
-
45
-
-
58949093371
-
Overexpression of a NAC transcription factor enhances rice drought and salt tolerance
-
Zheng X., Chen B., Lu G., Han B. Overexpression of a NAC transcription factor enhances rice drought and salt tolerance. Biochem. Biophys. Res. Commun. 2009, 379:985-989.
-
(2009)
Biochem. Biophys. Res. Commun.
, vol.379
, pp. 985-989
-
-
Zheng, X.1
Chen, B.2
Lu, G.3
Han, B.4
-
46
-
-
0036999615
-
Salt and drought stress signal transduction in plants
-
Zhu J.-K. Salt and drought stress signal transduction in plants. Annu. Rev. Plant Biol. 2002, 53:247.
-
(2002)
Annu. Rev. Plant Biol.
, vol.53
, pp. 247
-
-
Zhu, J.-K.1
-
47
-
-
70349414286
-
Genome-wide analysis of the putative AP2/ERF family genes in Vitis vinifera
-
Zhuang J., Peng R.H., Cheng Z.M., Zhang J., Cai B., Zhang Z., Gao F., Zhu Bo Fu X.Y., Jin X.F., Chen J.M., Qiao Y.S., Xiong A.S., Yao Q.H. Genome-wide analysis of the putative AP2/ERF family genes in Vitis vinifera. Sci. Hortic. 2009, 123:73-81.
-
(2009)
Sci. Hortic.
, vol.123
, pp. 73-81
-
-
Zhuang, J.1
Peng, R.H.2
Cheng, Z.M.3
Zhang, J.4
Cai, B.5
Zhang, Z.6
Gao, F.7
Zhu Bo Fu, X.Y.8
Jin, X.F.9
Chen, J.M.10
Qiao, Y.S.11
Xiong, A.S.12
Yao, Q.H.13
|