Molecular characterization of stress-inducible GmNAC genes in soybean

Molecular Genetics and Genomics

Volumn 281, Issue 6, 2009, Pages 647-664

  Tran, Lam Son Phan ^a,b   Quach, Truyen N ^a   Guttikonda, Satish K ^a   Aldrich, Donavan L ^a   Kumar, Rajesh ^a   Neelakandan, Anjanasree ^a   Valliyodan, Babu ^a   Nguyen, Henry T ^a  

^a UNIVERSITY OF MISSOURI   (United States)

^b RIKEN Center for Sustainable Resource Science   (Japan)

Author keywords

Abiotic stress; Expression; Soybean; Transcription factors; Transcriptional activity

Indexed keywords

ABSCISIC ACID; OLIGONUCLEOTIDE; TRANSCRIPTION FACTOR;

ARABIDOPSIS; ARTICLE; CARBOXY TERMINAL SEQUENCE; COLD STRESS; CONTROLLED STUDY; CULTIVAR; DROUGHT; DROUGHT STRESS; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE INDUCTION; GENETIC TRANSCRIPTION; GMNAC GENE; HYBRID; MOLECULAR CLONING; MOLECULAR GENETICS; MULTIGENE FAMILY; NONHUMAN; OPEN READING FRAME; PHYLOGENY; PLANT DEVELOPMENT; PLANT GENE; PLANT GROWTH; PLANT ROOT; PLANT STRESS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FUNCTION; REAL TIME POLYMERASE CHAIN REACTION; REGULATORY SEQUENCE; RICE; SALT STRESS; SCREENING; SHOOT; SOYBEAN; TRANSCRIPTION INITIATION; TRANSGENIC CROP; YEAST; AMINO ACID SEQUENCE; BIOLOGICAL MODEL; CHEMISTRY; DEHYDRATION; GENETICS; METABOLISM; NUCLEOTIDE SEQUENCE; SEQUENCE HOMOLOGY;

ARABIDOPSIS; GLYCINE MAX;

ABSCISIC ACID; AMINO ACID SEQUENCE; BASE SEQUENCE; CLONING, MOLECULAR; DEHYDRATION; DROUGHTS; GENES, PLANT; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDES; OPEN READING FRAMES; PHYLOGENY; SEQUENCE HOMOLOGY, AMINO ACID; SOYBEANS; TRANSCRIPTION FACTORS;

EID: 67449155835     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-009-0436-8     Document Type: Article

References (62)

1. A Aharoni S Dixit R Jetter E Thoenes G van Arkel A Pereira 2004 The SHINE clade of AP2 domain transcription factors activates wax biosynthesis, alters cuticle properties, and confers drought tolerance when overexpressed in Arabidopsis Plant Cell 16 2463 2480
2. M Aida T Ishida H Fukaki H Fujisawa M Tasaka 1997 Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant Plant Cell 9 841 857
3. P Bhatnagar-Mathur MJ Devi DS Reddy M Lavanya V Vadez R Serraj K Yamaguchi-Shinozaki KK Sharma 2007 Stress-inducible expression of At DREB1A in transgenic peanut (Arachis hypogaea L) increases transpiration efficiency under water-limiting conditions Plant Cell Rep 26 2071 2082
4. EA Bray 2004 Genes commonly regulated by water-deficit stress in Arabidopsis thaliana J Exp Bot 55 2331 2341
5. M Collinge T Boller 2001 Differential induction of two potato genes, Stprx2 and StNAC, in response to infection by Phytophthora infestans and to wounding Plant Mol Biol 46 521 529
6. M Duval TF Hsieh SY Kim TL Thomas 2002 Molecular characterization of AtNAM: a member of the Arabidopsis NAC domain superfamily Plant Mol Biol 50 237 248
7. HA Ernst AN Olsen S Larsen L Lo Leggio 2004 Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors EMBO Rep 5 297 303
8. Y Fang J You K Xie W Xie L Xiong 2008 Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice Mol Genet Genomics 280 535 546
9. M Fujita Y Fujita K Maruyama M Seki K Hiratsu M Ohme-Takagi L-SP Tran K Yamaguchi-Shinozaki K Shinozaki 2004 A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway Plant J 39 863 876
10. Y Fujita M Fujita R Satoh K Maruyama MM Parvez M Seki K Hiratsu M Ohme-Takagi K Shinozaki K Yamaguchi-Shinozaki 2005 AREB1 is a transcription activator of novel ABRE-dependent ABA signaling that enhances drought stress tolerance in Arabidopsis Plant Cell 17 3470 3488
11. Y Guo S Gan 2006 AtNAP, a NAC family transcription factor, has an important role in leaf senescence Plant J 46 601 612
12. SP Hazen Y Wu JA Kreps 2003 Gene expression profiling of plant responses to abiotic stress Funct Integr Genomics 3 105 111
13. XJ He RL Mu WH Cao ZG Zhang JS Zhang SY Chen 2005 AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root development Plant J 44 903 916
14. D Hegedus M Yu D Baldwin M Gruber A Sharpe I Parkin S Whitwill D Lydiate 2003 Molecular characterization of Brassica napus NAC domain transcriptional activators induced in response to biotic and abiotic stress Plant Mol Biol 53 383 397
15. H Hu M Dai J Yao B Xiao X Li Q Zhang L Xiong 2006 Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice Proc Natl Acad Sci USA 103 12987 12992
16. H Hu J You Y Fang X Zhu Z Qi L Xiong 2008 Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice Plant Mol Biol 67 169 181
17. VA James I Neibaur F Altpeter 2008 Stress inducible expression of the DREB1A transcription factor from xeric, Hordeum spontaneum L in turf and forage grass (Paspalum notatum Flugge) enhances abiotic stress tolerance Transgenic Res 17 93 104
18. MK Jensen PH Hagedorn M de Torres-Zabala MR Grant JH Rung DB Collinge MF Lyngkjaer 2008 Transcriptional regulation by an NAC (NAM-ATAF1, 2-CUC2) transcription factor attenuates ABA signalling for efficient basal defence towards Blumeria graminis f sp hordei in Arabidopsis Plant J 56 867 880
19. B Jian B Liu Y Bi W Hou C Wu T Han 2008 Validation of internal control for gene expression study in soybean by quantitative real-time PCR BMC Mol Biol 23 9 59
20. I John R Hackett W Cooper R Drake A Farrell D Grierson 1997 Cloning and characterization of tomato leaf senescence-related cDNAs Plant Mol Biol 33 641 651
21. A Kacperska 2004 Sensor types in signal transduction pathways in plant cells responding to abiotic stressors: do they depend on stress intensity? Physiol Plant 122 159 168
22. M Kasuga Q Liu S Miura K Yamaguchi-Shinozaki K Shinozaki 1999 Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor Nat Biotechnol 17 287 291
23. HS Kim OB Park HJ Yoo MS Jung MS Lee JH Han EK Kim HS Kim OC Lim D-J Yun SW Chung 2007 Identification of a calmodulin-binding NAC protein (CBNAC) as a transcriptional repressor in Arabidopsis J Biol Chem 282 36292 36302
24. PL Lu NZ Chen R An Z Su BS Qi F Ren J Chen XC Wang 2007 A novel drought-inducible gene, ATAF1, encodes a NAC family protein that negatively regulates the expression of stress-responsive genes in Arabidopsis Plant Mol Biol 63 289 305
25. Q Meng C Zhang J Gai D Yu 2006 Molecular cloning, sequence characterization and tissue-specific expression of six NAC-like genes in soybean (Glycine max (L) Merr) J Plant Physiol 164 1002 1012
26. N Mitsuda M Seki K Shinozaki M Ohme-Takagi 2005 The NAC transcription factors NST1 and NST2 of Arabidopsis regulate secondary wall thickenings and are required for anther dehiscence Plant Cell 17 2993 3006
27. N Mitsuda A Iwase H Yamamoto M Yoshida M Seki K Shinozaki M Ohme-Takagi 2007 NAC transcription factors, NST1 and NST3 are key regulators of the formation of secondary walls in woody tissues of Arabidopsis Plant Cell 19 270 280
28. K Nakashima L-SP Tran VD Nguyen M Fujita K Maruyama D Todaka Y Ito N Hayashi K Shinozaki K Yamaguchi-Shinozaki 2007 Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice Plant J 51 617 630
29. SK Oh S Lee SH Yu D Choi 2005 Expression of a novel NAC domain-containing transcription factor (CaNAC1) is preferentially associated with incompatible interactions between chili pepper and pathogens Planta 222 876 887
30. AN Olsen HA Ernst LL Leggio K Skriver 2005 NAC transcription factors: structurally distinct, functionally diverse Trends Plant Sci 10 79 87
31. H Ooka K Satoh K Doi T Nagata Y Otomo K Murakami K Matsubara N Osato J Kawai P Carninci Y Hayashizaki K Suzuki K Kojima Y Takahara K Yamamoto S Kikuchi 2003 Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana DNA Res 20 239 247
32. MA Rabbani K Maruyama H Abe MA Khan K Katsura Y Ito K Yoshiwara M Seki K Shinozaki K Yamaguchi-Shinozaki 2003 Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses Plant Physiol 133 1755 1767
33. DM Riaño-Pachón S Ruzicic I Dreyer B Mueller-Roeber 2007 PlnTFDB: an integrative plant transcription factor database BMC Bioinformatics 8 42
34. JL Riechmann J Heard G Martin L Reuber C Jiang J Keddie L Adam O Pineda OJ Ratcliffe RR Samaha R Creelman M Pilgrim P Broun JZ Zhang D Ghandehari BK Sherman G Yu 2000 Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes Science 290 2105 2110
35. RWM Sablowski EM Meyerowitz 1998 A homolog of NO APICAL MERISTEM is an immediate target of the floral homeotic genes APETALA3/PISTILLATA Cell 92 93 103
36. Y Sakuma K Maruyama K Osakabe F Qin M Seki K Shinozaki K Yamaguchi-Shinozaki 2006 Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression Plant Cell 18 1292 1309 (Pubitemid 43956132)
37. M Seki A Kamei K Yamaguchi-Shinozaki K Shinozaki 2003 Molecular responses to drought, salinity and frost: common and different paths for plant protection Curr Opin Biotechnol 14 194 199
38. RE Sharp V Poroyko LG Hejlek WG Spollen GK Springer HJ Bohnert HT Nguyen 2004 Root growth maintenance during water deficits: physiology to functional genomics J Exp Bot 55 2343 2351
39. RC Shoemaker J Schlueter JJ Doyle 2006 Paleopolyploidy and gene duplication in soybean and other legumes Curr Opin Plant Biol 9 104 109
40. SD Simpson K Nakashima Y Narusaka M Seki K Shinozaki K Yamaguchi-Shinozaki 2003 Two different novel cis-acting elements of erd1, a clpA homologous Arabidopsis gene, function in induction by dehydration stress and dark-induced senescence Plant J 33 259 270
41. E Souer A van Houwelingen D Kloos J Mol R Koes 1996 The no apical meristem gene of petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries Cell 85 159 170
42. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: molecular evolutionary genetics analysis (MEGA) software version 40 Mol Biol Evol 24 1596 1599
43. MF Thomashow 1999 Plant cold acclimation: freezing tolerance genes and regulatory mechanisms Annu Rev Plant Physiol Plant Mol Biol 50 571 599
44. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882
45. L-SP Tran K Nakashima Y Sakuma SD Simpson Y Fujita K Maruyama M Fujita M Seki K Shinozaki K Yamaguchi-Shinozaki 2004 Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter Plant Cell 16 2481 2498
46. L-SP Tran K Nakashima Y Sakuma Y Osakabe F Qin SD Simpson K Maruyama Y Fujita K Shinozaki K Yamaguchi-Shinozaki 2007 Co-expression of the stress-inducible zinc finger homeodomain ZFHD1 and NAC transcription factors enhances expression of the ERD1 gene in Arabidopsis Plant J 49 46 63
47. L-SP Tran K Nakashima K Shinozaki K Yamaguchi-Shinozaki 2007 Plant gene networks in osmotic stress response: from genes to regulatory networks Methods Enzymol 428 109 128
48. L-SP Tran T Urao F Qin K Maruyama T Kakimoto K Shinozaki K Yamaguchi-Shinozaki 2007 Functional analysis of AHK1/ATHK1 and cytokinin receptor histidine kinases in response to abscisic acid, drought, and salt stress in Arabidopsis Proc Natl Acad Sci USA 104 20623 20628
49. C Uauy A Distelfeld T Fahima A Blechl J Dubcovsky 2006 A NAC gene regulating senescence improves grain protein, zinc, and iron content in wheat Science 314 1298 1301
50. B Valliyodan HT Nguyen 2006 Understanding regulatory networks and engineering for enhanced drought tolerance in plants Curr Opin Plant Biol 9 189 195
51. CW Vroemen AP Mordhorst C Albrecht M Kwaaitaal SC de Vries 2003 The CUP-SHAPED COTYLEDON3 gene is required for boundary and shoot meristem formation in Arabidopsis Plant Cell 15 1563 1577
52. W Wang B Vinocur A Altman 2003 Plant responses to drought, salinity and extreme temperatures: towards genetic engineering for stress tolerance Planta 218 1 14
53. Q Xie G Frugis D Colgan NH Chua 2000 Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development Genes Dev 14 3024 3036
54. Q Xie HS Guo G Dallman S Fang AM Weissman NH Chua 2002 SINAT5 promotes ubiquitin-related degradation of NAC1 to attenuate auxin signals Nature 419 167 170
55. Y Xiong T Liu C Tian S Sun J Li M Chen 2005 Transcription factors in rice: a genome-wide comparative analysis between monocots and eudicots Plant Mol Biol 59 191 203
56. K Yamaguchi-Shinozaki K Shinozaki 2005 Organization of cis-acting regulatory elements in osmotic-and cold-stress-responsive promoters Trends Plant Sci 10 88 94
57. K Yamaguchi-Shinozaki K Shinozaki 2006 Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses Annu Rev Plant Biol 57 781 803
58. YS Yoo Y Kim YS Kim JS Lee HJ Ahn 2007 Control of flowering time and cold response by a NAC-domain protein in Arabidopsis PLoS ONE 2 e642
59. H Yu X Chen YY Hong Y Wang P Xu SD Ke HY Liu JK Zhu DJ Oliver CB Xiang 2008 Activated expression of an Arabidopsis HD-START protein confers drought tolerance with improved root system and reduced stomatal density Plant Cell 20 1134 1151
60. JZ Zhang RA Creelman JK Zhu 2004 From laboratory to field using information from Arabidopsis to engineer salt, cold, and drought tolerance in crops Plant Physiol 135 615 621
61. QY Zhou AG Tian HF Zou ZM Xie G Lei J Huang CM Wang HW Wang JS Zhang SY Chen 2008 Soybean WRKY-type transcription factor genes, GmWRKY13, GmWRKY21, and GmWRKY54, confer differential tolerance to abiotic stresses in transgenic Arabidopsis plants Plant Biotechnol J 6 486 503
62. JK Zhu 2002 Salt and drought stress signal transduction in plants Annu Rev Plant Physiol Plant Mol Biol 53 247 273