The Genera of Fungi: Fixing the application of type species of generic names

IMA Fungus

Volumn 5, Issue 1, 2014, Pages 141-160

  Crous, Pedro W ^a,b,c   Giraldo, Alejandra ^d   Hawksworth, David L ^e,f,g   Robert, Vincent ^a   Kirk, Paul M ^g,h   Guarro, Josep ^d   Robbertse, Barbara ⁱ   Schoch, Conrad L ⁱ   Damm, Ulrike ^j   Trakunyingcharoen, Thippawan ^k   Groenewald, Johannes Z ^a  

^a CBS KNAW FUNGAL BIODIVERSITY CENTRE   (Netherlands)

^b UTRECHT UNIVERSITY   (Netherlands)

^c WAGENINGEN UNIVERSITY   (Netherlands)

^d INSTITUT D INVESTIGACIÓ SANITÀRIA PERE VIRGILI IISPV   (Spain)

^e UNIVERSIDAD COMPLUTENSE DE MADRID   (Spain)

^f DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

^g ROYAL BOTANIC GARDENS   (United Kingdom)

^h INSTITUTE OF MICROBIOLOGY   (China)

ⁱ NATIONAL INSTITUTES OF HEALTH   (United States)

^j SENCKENBERG MUSEUM OF NATURAL HISTORY GÖRLITZ   (Germany)

^k CHIANG MAI UNIVERSITY   (Thailand)

more..

Author keywords

DNA Barcodes; Fungal systematic; ITS; LSU; typification

Indexed keywords

EID: 84916223785     PISSN: 22106340     EISSN: 22106359     Source Type: Journal    
DOI: 10.5598/imafungus.2014.05.01.14     Document Type: Article

References (78)

1. Andrianova TV, Minter TW (2007) New species of Bartalinia and Septoriella from the Altai Mountains (Russia). Mycotaxon 101: 297-313.
2. Arx JA von (1973) Centraalbureau voor Schimmelcultures Baarn and Delft. Progress Reports 1972. Verhandelingen der Koninklijke Nederlandsche Akademie van Wetenschappen, Afdeling Natuurkunde 61: 59-81.
3. Arx JA von (1981) The Genera of Fungi Sporulating in Pure Culture. 3rd edn. Vaduz: J. Cramer.
4. Aveskamp MM, Gruyter H de, Woudenberg JHC, Verkley GJM, Crous PW (2010) Highlights of the Didymellaceae: A polyphasic approach to characterise Phoma and related pleosporalean genera. Studies in Mycology 65: 1-60.
5. Braun U (1995) A monograph of Cercosporella, Ramularia and allied genera (Phytopathogenic Hyphomycetes). Vol. 1. Eching: IHWVerlag.
6. Chaverri P, Salgado C, Hirooka Y, Rossman AY, Samuels GJ (2011) Delimitation of Neonectria and Cylindrocarpon (Nectriaceae, Hypocreales, Ascomycota) and related genera with Cylindrocarpon-like anamorphs. Studies in Mycology 68: 57-78.
7. Cheewangkoon R, Crous PW, Hyde KD, Groenewald JZ, To-anan C (2008) Species of Mycosphaerella and related anamorphs on Eucalyptus leaves from Thailand. Persoonia 21: 77-91.
8. Clements FE, Shear CL (1931) The Genera of Fungi. New York: H.W. Wilson.
9. Crous PW (1993) New and interesting fungi. 13. Foliicolous microfungi. South African Journal of Botany 59: 602-610.
10. Crous PW, Gams W, Stalpers JA, Robert V, Stegehuis G (2004) MycoBank: an online initiative to launch mycology into the 21st century. Studies in Mycology 50: 19-22.
11. Crous PW, Groenewald JZ (2005) Hosts, species and genotypes: opinions versus data. Australasian Plant Pathology 34: 463-470.
12. Crous PW, Schoch CL, Hyde KD, Wood AR, Gueidan C, et al. (2009a) Phylogenetic lineages in the Capnodiales. Studies in Mycology 64: 17-47.
13. Crous PW, Slippers B, Wingfield MJ, Rheeder J, Marasas WFO, et al. (2006) Phylogenetic lineages in the Botryosphaeriaceae. Studies in Mycology 55: 235-253.
14. Crous PW, Verkley GJM, Christensen M, Castañeda-Ruiz RF, Groenewald JZ (2012) How important are conidial appendages? Persoonia 28: 126-137.
15. Crous PW, Verkley GJM, Groenewald JZ, Samson RA (eds) (2009b) Fungal Biodiversity. [CBS Laboratory Manual Series no.1.] Utrecht: CBS-KNAW Fungal Biodiversity Centre.
16. Crous PW, Wingfield MJ, Guarro J, Cheewangkoon R, van der Bank M, et al. (2013) Fungal Planet description sheets: 154-213. Persoonia 31: 188-296.
17. Crous PW, Wingfield MJ, Park RF (1991) Mycosphaerella nubilosa a synonym of M. molleriana. Mycological Research 95: 628-632.
18. Fonseka RN (1960) The morphology of Chaetospermum chaetosporum. Transactions of the British Mycological Society 43: 631-636.
19. Gangadevi V, Muthumary J (2008) Taxol, an anticancer drug produced by an endophytic fungus Bartalinia robillardoides Tassi, isolated from a medicinal plant, Aegle marmelos Correa ex Roxb. World Journal of Microbiology and Biotechnology 24: 717-724.
20. Gräfenhan T, Schroers H-J, Nirenberg HI, Seifert KA (2011) An overview of the taxonomy, phylogeny, and typification of nectriaceous fungi in Cosmospora, Acremonium, Fusarium, Stilbella, and Volutella. Studies in Mycology 68: 79-113.
21. Gryganskyi AP, Humber RA, Smith ME, Hodge K, Huang B, Voigt K, Vilgalys R (2013) Phylogenetic lineages in Entomophthoromycota. Persoonia 30: 94-105.
22. Hawksworth DL (2011) A new dawn for the naming of fungi: impacts of decisions made in Melbourne in July 2011 on the future publication and regulation of fungal names. IMA Fungus 2: 155-162.
23. Hawksworth DL, Crous PW, Redhead SA, Reynolds DR, Samson RA, et al. (2011). The Amsterdam Declaration on Fungal Nomenclature. IMA Fungus 2: 105-112.
24. Hawksworth DL (2012) Managing and coping with names of pleomorphic fungi in a period of transition. IMA Fungus 4: 53-56.
25. Hebert PDN, Cywinska A, Ball SL, DeWaard JR (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London B, Biological Sciences 270: 313-321.
26. Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, et al. (2007) A higher-level phylogenetic classification of the Fungi. Mycological Research 111: 509-547.
27. Hibbett DS, Ohman A, Glotzer D, Nuhn M, Kirk P, Nilsson RH (2011) Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences. Fungal Biology Reviews 25: 38-47.
28. Hirooka Y, Rossman AY, Samuels GJ, Lechat C, Chaverri P (2012) A monograph of Allantonectria, Nectria, and Pleonectria (Nectriaceae, Hypocreales, Ascomycota) and their pycnidial, sporodochial, and synnematous anamorphs. Studies in Mycology 71: 1-210.
29. Höhnel F von (1907) Fragmente zur Mykologie III. Mitteilung, Nr. 92 bis 155. Sitzungsberichten der Kaiserliche Akademie der Wissenschaften in Wien Mathematische-naturwissenschaftliche Klasse 116: 83-162.
30. Höhnel F von (1918) Dritte vorlaufige Mitteilung mycologischer Ergebnisse (Nr. 201-304). Berichte der Deutschen Botanischen Gesellschaft 36: 309-317.
31. Höhnel F von (1924) über die Gattung Chaetospermum Sacc. Mitteilungen aus dem Botanischen Institut der Technischen Hochschule in Wien 3: 86-88.
32. Hoog GS de, Gerrits van den Ende AHG (1998). Molecular diagnostics of clinical strains of filamentous Basidiomycetes. Mycoses 41: 183-189.
33. Kirk PM, Cannon PF, Minter DW, Stalpers JA (2008) Ainsworth & Bisby's Dictionary of the Fungi. 10th edn. Wallingford: CAB International.
34. Kirk PM, Stalpers JA, Braun U, Crous PW, Hansen K, et al. (2013) A without-prejudice list of generic names of fungi for protection under the International Code of Nomenclature for algae, fungi and plants. IMA Fungus 4: 381-443.
35. Kirschner R, Oberwinkler F (2009) Supplementary notes on Basidiopycnis hyalina (Basidiomycota, Atractiellales) and its anamorph. Mycotaxon 109: 29-38.
36. Marincowitz S, Gryzenhout M, Wingfield MJ (2010) New and rare coelomycetes with appendage-bearing conidia from Pondoland, South Africa. Mycotaxon 111: 309-322.
37. Mathur PN, Thirumalachar J (1959) Studies on some Indian soil fungi I. Some new or noteworthy Sphaeropsidales. Sydowia 13: 143-147.
38. Minnis AM, Kennedy AH, Grenier DB, Palm ME, Rossman AY (2012) Phylogeny and taxonomic revision of the Planistromellaceae including its coelomycetous anamorphs: contributions towards a monograph of the genus Kellermania. Persoonia 29: 11-28.
39. Miranda BEC, Barreto RW, Crous PW, Groenewald JZ (2012) Pilidiella tibouchinae sp. nov. associated with foliage blight of Tibouchina granulosa (quaresmeira) in Brazil. IMA Fungus 3: 1-7.
40. Nag Raj TR (1975) Genera coelomycetum. XI. Hyalotoa, Hyalotiella and Hyalotiopsis. Canadian Journal of Botany 53: 1615-1624.
41. Nag Raj TR (1979) Genera coelomycetum XVII. New anamorph genera: Libartania and Plectronidiopsis. Canadian Journal of Botany 57: 1389-1397.
42. Nag Raj TR (1993) Coelomycetous Anamorphs with appendage bearing conidia. Waterloo, ON: Mycologue Publications.
43. Nag Raj TR, DiCosmo F (1984) Genera coelomycetum. XXII. Amphiciliella, Choanatiara anam.-gen. nov., Ciferriella, Cymbothyrium, Melanostroma, Phialophorophoma and Thyrsidiana. Canadian Journal of Botany 62: 709-721.
44. Niekerk JM van, Groenewald JZ, Verkley GJM, Fourie PH, Wingfield MJ, Crous PW (2004) Systematic reappraisal of Coniella and Pilidiella, with specific reference to species occurring on Eucalyptus and Vitis in South Africa. Mycological Research 108: 283-303.
45. Patouillard MN (1888) Note sur une Tubercularée graminicole. Bulletin de la Société Mycologique de France 4: 39-40.
46. Petrak F (1960) Ergebnisse einer Revision der Grundtypen verschiedener Gattungen der Askomyzeten und Fungi imperfecti. Sydowia 14: 347-354.
47. Petrak F, Sydow H (1927) Die Gattungen der Pyrenomyzeten, Sphaeropsideen und Melanconieen. I. Der phaeosporen Sphaeropsideen und die Gattung Macrophoma. Feddes Repertorium Speciarum Novarum Regni Vegetabilum Beihefte 42: 1-551.
48. Phillips AJL, Alves A, Abdollahzadeh J, Slippers B, Wingfield MJ, et al. (2013) The Botryosphaeriaceae: genera and species known from culture. Studies in Mycology 76: 51-167.
49. Quaedvlieg W, Groenewald JZ, de Jesús Yáñez-Morales M, Crous PW (2012) DNA barcoding of Mycosphaerella species of quarantine importance to Europe. Persoonia 29: 101-115.
50. Quaedvlieg W, Verkley GJM, Shin H-D, Barreto RW, Alfenas AC, et al. (2013). Sizing up Septoria. Studies in Mycology 75: 307-390.
51. Rajeshkumar KC, Singh PN, Yadav LS, Swami SV, Singh SK (2010) Chaetospermum setosum sp. nov. from the Western Ghats, India. Mycotaxon 113: 397-404.
52. Rayner RW (1970) A Mycological Colour Chart. Kew: Commonwealth Mycological Institute.
53. Rossman AY, Farr DF, Castlebury LA (2007) A review of the phylogeny and biology of the Diaporthales. Mycoscience 48: 135-144.
54. Rungjindamai N, Sakayaroj J, Plaingam N, Somrithipol S, Jones EBG (2008) Putative teleomorphs of the coelomycete genera Chaetospermum, Guilia and Mycotribulus based on nuclear large and small subunit rDNA. Mycological Research 112: 802-810.
55. Saccardo PA (1892) Sylloge Fungorum. Vol 10. Padova: P.A. Saccardo.
56. Schmitt I, Crespo A, Divakar PK, Fankhauser JD, Herman-Sackett E, et al. (2009) New primers for single-copy genes in fungal phylogenetics and systematics. Persoonia 23: 35-40.
57. Schoch CL, Robbertse B, Robert V, Vu D, Cardinali G et al. (2014) Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi. Database: in press.
58. Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, et al. (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences, USA 109: 6241-6246.
59. Schroers H-J, Gräfenhan T, Nirenberg HI, Seifert KA (2011) A revision of Cyanonectria and Geejayessia gen. nov., and related species with Fusarium-like anamorphs. Studies in Mycology 68: 115-138.
60. Sigler L (1990) Occurrence of a yeast-like synanamorph in the fungicolous coelomycete Eleutheromyces subulatus. Cryptogamic Botany 1: 384-389.
61. Slippers B, Boissin E, Phillips AJL, Groenewald JZ, Wingfield MJ, et al. (2013) Phylogenetic lineages in the Botryosphaeriales: a systematic and evolutionary framework. Studies in Mycology 76: 31-49.
62. Smith AL, Ramsbottom J (1914) New or rare fungi. Transactions of the British Mycological Society 4: 318-330.
63. Smith H, Wingfield MJ, Crous PW, Coutinho TA (1996) Sphaeropsis sapinea and Botryosphaeria dothidea endophytic in Pinus spp. and Eucalyptus spp. in South Africa. South African Journal of Botany 62: 86-88.
64. Subramanian CV, Ramakrishnan K (1954) Alpakesa, a new genus of the Sphaeropsidales. Journal of the Indian Botanical Society 33: 203-205.
65. Sutton BC (1969) Type studies of Coniella, Anthasthoopa, and Cyclodomella. Canadian Journal of Botany 47: 603-608.
66. Sutton B (1977) Coelomycetes VI. Nomenclature of generic names proposed for Coelomycetes. Mycological Papers 141: 1-253.
67. Sutton BC (1980) The Coelomycetes: fungi imperfecti with pycnidia, acervuli, and stromata. Kew: Commonwealth Mycological Institute.
68. Sutton BC, Alcorn JL (1985) Undescribed species of Crinitospora gen. nov., Massariothea, Mycoleptodiscus and Neottiosporina from Australia. Transactions of the British Mycological Society 84: 437-445.
69. Tanaka K, Endo M, Hirayama K, Okane I, Hosoya T, Sato T (2011) Phylogeny of Discosia and Seimatosporium, and introduction of Adisciso and Immersidiscosia genera nova. Persoonia 26: 85-98.
70. Taylor JW, Jacobson DJ, Kroken S, Kasuga T, Geiser DM, et al. (2000) Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and Biology 31: 21-32.
71. Tretter ED, Johnson EM, Wang Y, Kandel P, White MM (2013) Examining new phylogenetic markers to uncover the evolutionary history of early-diverging fungi: comparing MCM7, TSR1 and rRNA genes for single-and multi-gene analyses of the Kickxellomycotina. Persoonia 30: 106-125.
72. Tsuneda A, Murakami S, Gill WM, Maekawa N (1997) Black spot disease of Lentinula edodes caused by the Hyphozyma synanamorph of Eleutheromyces subulatus. Mycologia 89: 867-875.
73. Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238-4246.
74. Wells K (1975). Studies of some Tremellaceae. V. A new genus, Efibulobasidium. Mycologia 67: 147-156.
75. Wells K, Bandoni RJ (2001) Heterobasidiomycetes. In: The Mycota. Vol. VII Part B. Systematics and Evolution (McLaughlin DJ, McLaughlin EG, Lemke PA, eds): 85-120. Berlin: Springer-Verlag.
76. White TJ, Bruns T, Lee J, Taylor SB (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Protocols: a guide to methods and applications (Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds): 315-322. San Diego: Academic Press.
77. Wingfield MJ, De Beer ZW, Slippers B, Wingfield BD, Groenewald JZ, et al. (2012) One fungus, one name promotes progressive plant pathology. Molecular Plant Pathology 13: 604-613.
78. Woudenberg JHC, Groenewald JZ, Binder M, Crous PW (2013) Alternaria redefined. Studies in Mycology 75: 171-212.