-
1
-
-
33847408371
-
Head-to-head comparison of serum fractionation techniques
-
Whiteaker, J. R.; Zhang, H.; Eng, J. K.; Fang, R.; Piening, B. D.; Feng, L. C. Head-to-head comparison of serum fractionation techniques J. Proteome Res. 2007, 6 (2) 828-836
-
(2007)
J. Proteome Res.
, vol.6
, Issue.2
, pp. 828-836
-
-
Whiteaker, J.R.1
Zhang, H.2
Eng, J.K.3
Fang, R.4
Piening, B.D.5
Feng, L.C.6
-
2
-
-
74049118091
-
A proteomic approach for plasma biomarker discovery with iTRAQ labeling and OFFGEL fractionation
-
Ernoult, E.; Bourreau, A.; Gamelin, E.; Guette, C. A proteomic approach for plasma biomarker discovery with iTRAQ labeling and OFFGEL fractionation J. Biomed. Biotechnol. 2010, 2010, 927917
-
(2010)
J. Biomed. Biotechnol.
, vol.2010
, pp. 927917
-
-
Ernoult, E.1
Bourreau, A.2
Gamelin, E.3
Guette, C.4
-
3
-
-
68049125059
-
The evolving role of mass spectrometry in cancer biomarker discovery
-
Wang, P.; Whiteaker, J. R.; Paulovich, A. G. The evolving role of mass spectrometry in cancer biomarker discovery Cancer Biol. Ther. 2009, 8 (12) 1083-1094
-
(2009)
Cancer Biol. Ther.
, vol.8
, Issue.12
, pp. 1083-1094
-
-
Wang, P.1
Whiteaker, J.R.2
Paulovich, A.G.3
-
4
-
-
6044226889
-
Differential mass spectrometry: A label-free LC-MS method for finding significant differences in complex peptide and protein mixtures
-
Wiener, M. C.; Sachs, J. R.; Deyanova, E. G.; Yates, N. A. Differential mass spectrometry: a label-free LC-MS method for finding significant differences in complex peptide and protein mixtures Anal. Chem. 2004, 76 (20) 6085-6096
-
(2004)
Anal. Chem.
, vol.76
, Issue.20
, pp. 6085-6096
-
-
Wiener, M.C.1
Sachs, J.R.2
Deyanova, E.G.3
Yates, N.A.4
-
5
-
-
77952226764
-
Super-SILAC mix for quantitative proteomics of human tumor tissue
-
Geiger, T.; Cox, J.; Ostasiewicz, P.; Wisniewski, J. R.; Mann, M. Super-SILAC mix for quantitative proteomics of human tumor tissue Nat. Methods 2010, 7 (5) 383-385
-
(2010)
Nat. Methods
, vol.7
, Issue.5
, pp. 383-385
-
-
Geiger, T.1
Cox, J.2
Ostasiewicz, P.3
Wisniewski, J.R.4
Mann, M.5
-
6
-
-
33746811896
-
Proteomic analysis in cancer research: Potential application in clinical use
-
García-Foncillas, J.; Bandrés, E.; Zárate, R.; Remírez, N. Proteomic analysis in cancer research: potential application in clinical use Clin. Transl. Oncol. 2006, 8 (4) 250-261
-
(2006)
Clin. Transl. Oncol.
, vol.8
, Issue.4
, pp. 250-261
-
-
García-Foncillas, J.1
Bandrés, E.2
Zárate, R.3
Remírez, N.4
-
7
-
-
74049087478
-
A glycomics approach to the discovery of potential cancer biomarkers
-
An, H. J.; Lebrilla, C. B. A glycomics approach to the discovery of potential cancer biomarkers Methods Mol. Biol. 2010, 600, 199-213
-
(2010)
Methods Mol. Biol.
, vol.600
, pp. 199-213
-
-
An, H.J.1
Lebrilla, C.B.2
-
8
-
-
33747030845
-
Protein biomarker discovery and validation: The long and uncertain path to clinical utility
-
Rifai, N.; Gillette, M. A.; Carr, S. A. Protein biomarker discovery and validation: the long and uncertain path to clinical utility Nat. Biotechnol. 2006, 24, 971-983
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 971-983
-
-
Rifai, N.1
Gillette, M.A.2
Carr, S.A.3
-
9
-
-
79951521146
-
Protein microarray signature of autoantibody biomarkers for the early detection of breast cancer
-
Anderson, K. S.; Sibani, S.; Wallstrom, G.; Qiu, J.; Mendoza, E. A.; Raphael, J. Protein microarray signature of autoantibody biomarkers for the early detection of breast cancer J. Proteome Res. 2011, 10 (1) 85-96
-
(2011)
J. Proteome Res.
, vol.10
, Issue.1
, pp. 85-96
-
-
Anderson, K.S.1
Sibani, S.2
Wallstrom, G.3
Qiu, J.4
Mendoza, E.A.5
Raphael, J.6
-
10
-
-
70349231384
-
Multiplexed microbead immunoassays by flow cytometry for molecular profiling: Basic concepts and proteomics applications
-
Krishhan, V. V.; Khan, I. H.; Luciw, P. A. Multiplexed microbead immunoassays by flow cytometry for molecular profiling: Basic concepts and proteomics applications Crit. Rev. Biotechnol. 2009, 29 (1) 29-43
-
(2009)
Crit. Rev. Biotechnol.
, vol.29
, Issue.1
, pp. 29-43
-
-
Krishhan, V.V.1
Khan, I.H.2
Luciw, P.A.3
-
11
-
-
75749130354
-
The clinical plasma proteome: A survey of clinical assays for proteins in plasma and serum
-
Anderson, N. L. The clinical plasma proteome: a survey of clinical assays for proteins in plasma and serum Clin. Chem. 2010, 56 (2) 177-185
-
(2010)
Clin. Chem.
, vol.56
, Issue.2
, pp. 177-185
-
-
Anderson, N.L.1
-
12
-
-
76649122499
-
Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance
-
Paulovich, A. G.; Billheimer, D.; Ham, A. J.; Vega-Montoto, L.; Rudnick, P. A.; Tabb, D. L. Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance Mol. Cell. Proteomics 2010, 9 (2) 242-254
-
(2010)
Mol. Cell. Proteomics
, vol.9
, Issue.2
, pp. 242-254
-
-
Paulovich, A.G.1
Billheimer, D.2
Ham, A.J.3
Vega-Montoto, L.4
Rudnick, P.A.5
Tabb, D.L.6
-
13
-
-
67650382229
-
Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: The Amsterdam principles
-
Rodriguez, H.; Snyder, M.; Uhlén, M.; Andrews, P.; Beavis, R.; Borchers, C. Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: the Amsterdam principles J. Proteome Res. 2009, 8 (7) 3689-3692
-
(2009)
J. Proteome Res.
, vol.8
, Issue.7
, pp. 3689-3692
-
-
Rodriguez, H.1
Snyder, M.2
Uhlén, M.3
Andrews, P.4
Beavis, R.5
Borchers, C.6
-
14
-
-
76649132322
-
A community standard format for the representation of protein affinity reagents
-
Gloriam, D. E.; Orchard, S.; Bertinetti, D.; Björling, E.; Bongcam-Rudloff, E.; Borrebaeck, C. A. A community standard format for the representation of protein affinity reagents Mol. Cell. Proteomics. 2010, 9 (1) 1-10
-
(2010)
Mol. Cell. Proteomics.
, vol.9
, Issue.1
, pp. 1-10
-
-
Gloriam, D.E.1
Orchard, S.2
Bertinetti, D.3
Björling, E.4
Bongcam-Rudloff, E.5
Borrebaeck, C.A.6
-
15
-
-
84890023096
-
Statistical design for biospecimen cohort size in proteomics-based biomarker discovery and verification studies
-
Skates, S. J.; Gillette, M. A.; Labaer, J.; Carr, S. A.; Anderson, L.; Liebler, D. C. Statistical design for biospecimen cohort size in proteomics-based biomarker discovery and verification studies J. Proteome Res. 2013, 12 (12) 5383-5394
-
(2013)
J. Proteome Res.
, vol.12
, Issue.12
, pp. 5383-5394
-
-
Skates, S.J.1
Gillette, M.A.2
Labaer, J.3
Carr, S.A.4
Anderson, L.5
Liebler, D.C.6
-
16
-
-
79960214321
-
A targeted proteomics-based pipeline for verification of biomarkers in plasma
-
Whiteaker, J. R.; Lin, C.; Kennedy, J.; Hou, L.; Trute, M.; Sokal, I. A targeted proteomics-based pipeline for verification of biomarkers in plasma. Nat. Biotechnol. 2011, 29 (7) 625-634
-
(2011)
Nat. Biotechnol.
, vol.29
, Issue.7
, pp. 625-634
-
-
Whiteaker, J.R.1
Lin, C.2
Kennedy, J.3
Hou, L.4
Trute, M.5
Sokal, I.6
-
17
-
-
4644273796
-
Selective detection of monohydroxy metabolites of polycyclic aromatic hydrocarbons in urine using liquid chromatography/triple quadrupole tandem mass spectrometry
-
Xu, X.; Zhang, J.; Zhang, L.; Liu, W.; Weisel, C. P. Selective detection of monohydroxy metabolites of polycyclic aromatic hydrocarbons in urine using liquid chromatography/triple quadrupole tandem mass spectrometry Rapid Commun. Mass Spectrom. 2004, 18 (19) 2299-2308
-
(2004)
Rapid Commun. Mass Spectrom.
, vol.18
, Issue.19
, pp. 2299-2308
-
-
Xu, X.1
Zhang, J.2
Zhang, L.3
Liu, W.4
Weisel, C.P.5
-
18
-
-
35448939711
-
Quantitative measurement of endogenous estrogens and estrogen metabolites in human serum by liquid chromatography-tandem mass spectrometry
-
Xu, X.; Roman, J. M.; Issaq, H. J.; Keefer, L. K.; Veenstra, T. D.; Ziegler, R. G. Quantitative measurement of endogenous estrogens and estrogen metabolites in human serum by liquid chromatography-tandem mass spectrometry Anal. Chem. 2007, 79 (20) 7813-7821
-
(2007)
Anal. Chem.
, vol.79
, Issue.20
, pp. 7813-7821
-
-
Xu, X.1
Roman, J.M.2
Issaq, H.J.3
Keefer, L.K.4
Veenstra, T.D.5
Ziegler, R.G.6
-
19
-
-
1842528125
-
13C-labeled peptide standards
-
13C-labeled peptide standards Proteomics 2004, 4 (4) 1175-1186
-
(2004)
Proteomics
, vol.4
, Issue.4
, pp. 1175-1186
-
-
Kuhn, E.1
Wu, J.2
Karl, J.3
Liao, H.4
Zolg, W.5
Guild, B.6
-
20
-
-
79953227740
-
Increased selectivity, analytical precision, and throughput in targeted proteomics
-
Kiyonami, R.; Schoen, A.; Prakash, A.; Peterman, S.; Zabrouskov, V.; Picotti, P. Increased selectivity, analytical precision, and throughput in targeted proteomics Mol. Cell. Proteomics. 2011, 10 (2) M110.002931
-
(2011)
Mol. Cell. Proteomics.
, vol.10
, Issue.2
, pp. 110002931
-
-
Kiyonami, R.1
Schoen, A.2
Prakash, A.3
Peterman, S.4
Zabrouskov, V.5
Picotti, P.6
-
21
-
-
82355175131
-
Rapid empirical discovery of optimal peptides for targeted proteomics
-
Stergachis, A. B.; MacLean, B.; Lee, K.; Stamatoyannopoulos, J. A.; MacCoss, M. J. Rapid empirical discovery of optimal peptides for targeted proteomics Nat. Methods 2011, 8 (12) 1041-1043
-
(2011)
Nat. Methods
, vol.8
, Issue.12
, pp. 1041-1043
-
-
Stergachis, A.B.1
MacLean, B.2
Lee, K.3
Stamatoyannopoulos, J.A.4
MacCoss, M.J.5
-
22
-
-
66449083773
-
Developing multiplexed assays for troponin i and interleukin-33 in plasma by peptide immunoaffinity enrichment and targeted mass spectrometry
-
Kuhn, E.; Addona, T.; Keshishian, H.; Burgess, M.; Mani, D. R.; Lee, R. T. Developing multiplexed assays for troponin I and interleukin-33 in plasma by peptide immunoaffinity enrichment and targeted mass spectrometry Clin. Chem. 2009, 55 (6) 1108-1117
-
(2009)
Clin. Chem.
, vol.55
, Issue.6
, pp. 1108-1117
-
-
Kuhn, E.1
Addona, T.2
Keshishian, H.3
Burgess, M.4
Mani, D.R.5
Lee, R.T.6
-
23
-
-
8844233567
-
Mass spectrometric quantitation of peptides and proteins using stable isotope standards and capture by anti-peptide antibodies (SISCAPA)
-
Anderson, N. L.; Anderson, N. G.; Haines, L. R.; Hardie, D. B.; Olafson, R. W.; Pearson, T. W. Mass spectrometric quantitation of peptides and proteins using stable isotope standards and capture by anti-peptide antibodies (SISCAPA) J. Proteome Res. 2004, 3 (2) 235-244
-
(2004)
J. Proteome Res.
, vol.3
, Issue.2
, pp. 235-244
-
-
Anderson, N.L.1
Anderson, N.G.2
Haines, L.R.3
Hardie, D.B.4
Olafson, R.W.5
Pearson, T.W.6
-
24
-
-
77956878144
-
Towards the development of an immuno MALDI (iMALDI) mass spectrometry assay for the diagnosis of hypertension
-
Reid, J. D.; Holmes, D. T.; Mason, D. R.; Shah, B.; Borchers, C. H. Towards the development of an immuno MALDI (iMALDI) mass spectrometry assay for the diagnosis of hypertension J. Am. Soc. Mass Spectrom. 2010, 21 (10) 1680-1686
-
(2010)
J. Am. Soc. Mass Spectrom.
, vol.21
, Issue.10
, pp. 1680-1686
-
-
Reid, J.D.1
Holmes, D.T.2
Mason, D.R.3
Shah, B.4
Borchers, C.H.5
-
25
-
-
36049046122
-
An immunoaffinity tandem mass spectrometry (iMALDI) assay for detection of Francisella tularensis
-
Jiang, J.; Parker, C. E.; Fuller, J. R.; Kawula, T. H.; Borchers, C. H. An immunoaffinity tandem mass spectrometry (iMALDI) assay for detection of Francisella tularensis Anal. Chim. Acta 2007, 605 (1) 70-79
-
(2007)
Anal. Chim. Acta
, vol.605
, Issue.1
, pp. 70-79
-
-
Jiang, J.1
Parker, C.E.2
Fuller, J.R.3
Kawula, T.H.4
Borchers, C.H.5
-
26
-
-
61849133375
-
Absolute quantification of C-reactive protein in human plasma derived from patients with epithelial ovarian cancer utilizing protein cleavage isotope dilution mass spectrometry
-
Williams, D. K.; Muddiman, D. C. Absolute quantification of C-reactive protein in human plasma derived from patients with epithelial ovarian cancer utilizing protein cleavage isotope dilution mass spectrometry J. Proteome Res. 2009, 8 (2) 1085-1090
-
(2009)
J. Proteome Res.
, vol.8
, Issue.2
, pp. 1085-1090
-
-
Williams, D.K.1
Muddiman, D.C.2
-
27
-
-
84895555123
-
Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach
-
Carr, S. A.; Abbatiello, S. E.; Ackermann, B. L.; Borchers, C.; Domon, B.; Deutsch, E. W.; Grant, R. P.; Hoofnagle, A. N.; H Uumlttenhain, R.; Koomen, J. M.; Liebler, D. C.; Liu, T.; Maclean, B.; Mani, D. R.; Mansfield, E.; Neubert, H.; Paulovich, A. G.; Reiter, L.; Vitek, O.; Aebersold, R.; Anderson, L.; Bethem, R.; Blonder, J.; Boja, E.; Botelho, J.; Boyne, M.; Bradshaw, R. A.; Burlingame, A. L.; Chan, D.; Keshishian, H.; Kuhn, E.; Kinsinger, C.; Lee, J.; Lee, S. W.; Moritz, R.; Oses-Prieto, J.; Rifai, N.; Ritchie, J.; Rodriguez, H.; Srinivas, P. R.; Townsend, R. R.; Van Eyk, J.; Whiteley, G.; Wiita, A.; Weintraub, S. Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach Mol. Cell. Proteomics. 2014, 13 (3) 907-917
-
(2014)
Mol. Cell. Proteomics.
, vol.13
, Issue.3
, pp. 907-917
-
-
Carr, S.A.1
Abbatiello, S.E.2
Ackermann, B.L.3
Borchers, C.4
Domon, B.5
Deutsch, E.W.6
Grant, R.P.7
Hoofnagle, A.N.8
Uumlttenhain R, H.9
Koomen, J.M.10
Liebler, D.C.11
Liu, T.12
MacLean, B.13
Mani, D.R.14
Mansfield, E.15
Neubert, H.16
Paulovich, A.G.17
Reiter, L.18
Vitek, O.19
Aebersold, R.20
Anderson, L.21
Bethem, R.22
Blonder, J.23
Boja, E.24
Botelho, J.25
Boyne, M.26
Bradshaw, R.A.27
Burlingame, A.L.28
Chan, D.29
Keshishian, H.30
Kuhn, E.31
Kinsinger, C.32
Lee, J.33
Lee, S.W.34
Moritz, R.35
Oses-Prieto, J.36
Rifai, N.37
Ritchie, J.38
Rodriguez, H.39
Srinivas, P.R.40
Townsend, R.R.41
Van Eyk, J.42
Whiteley, G.43
Wiita, A.44
Weintraub, S.45
more..
-
28
-
-
14644437012
-
Food and Drug Administration regulation of in vitro diagnostic devices
-
Mansfield, E.; O'Leary, T. J.; Gutman, S. I. Food and Drug Administration regulation of in vitro diagnostic devices J. Mol. Diagn. 2005, 7 (1) 2-7
-
(2005)
J. Mol. Diagn.
, vol.7
, Issue.1
, pp. 2-7
-
-
Mansfield, E.1
O'Leary, T.J.2
Gutman, S.I.3
-
29
-
-
79955432121
-
The path to clinical proteomics research: Integration of proteomics, genomics, clinical laboratory and regulatory science
-
Boja, E. S.; Rodriguez, H. The path to clinical proteomics research: integration of proteomics, genomics, clinical laboratory and regulatory science Korean J. Lab. Med. 2011, 31 (2) 61-71
-
(2011)
Korean J. Lab. Med.
, vol.31
, Issue.2
, pp. 61-71
-
-
Boja, E.S.1
Rodriguez, H.2
-
30
-
-
67650564834
-
Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma
-
Addona, T. A.; Abbatiello, S. E.; Schilling, B.; Skates, S. J.; Mani, D. R.; Bunk, D. M. Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma Nat. Biotechnol. 2009, 27 (7) 633-641
-
(2009)
Nat. Biotechnol.
, vol.27
, Issue.7
, pp. 633-641
-
-
Addona, T.A.1
Abbatiello, S.E.2
Schilling, B.3
Skates, S.J.4
Mani, D.R.5
Bunk, D.M.6
-
31
-
-
79956155894
-
The journey to regulation of protein-based multiplex quantitative assays
-
Boja, E. S.; Jortani, S. A.; Ritchie, J.; Hoofnagle, A. N.; Težak, Ž; Mansfield, E. The journey to regulation of protein-based multiplex quantitative assays Clin. Chem. 2011, 57 (4) 560-567
-
(2011)
Clin. Chem.
, vol.57
, Issue.4
, pp. 560-567
-
-
Boja, E.S.1
Jortani, S.A.2
Ritchie, J.3
Hoofnagle, A.N.4
Težak, Z.5
Mansfield, E.6
-
32
-
-
78650735473
-
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
-
Shi, L.; Reid, L. H.; Jones, W. D.; Shippy, R.; Warrington, J. A.; Baker, S. C. The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models Nat. Biotechnol. 2010, 28 (8) 827-838
-
(2010)
Nat. Biotechnol.
, vol.28
, Issue.8
, pp. 827-838
-
-
Shi, L.1
Reid, L.H.2
Jones, W.D.3
Shippy, R.4
Warrington, J.A.5
Baker, S.C.6
-
33
-
-
75749154485
-
Protein-based multiplex assays: Mock presubmissions to the US Food and Drug Administration
-
Regnier, F. E.; Skates, S. J.; Mesri, M.; Rodriguez, H.; Tezak, Z.; Kondratovich, M. V. Protein-based multiplex assays: mock presubmissions to the US Food and Drug Administration Clin. Chem. 2010, 56 (2) 165-171
-
(2010)
Clin. Chem.
, vol.56
, Issue.2
, pp. 165-171
-
-
Regnier, F.E.1
Skates, S.J.2
Mesri, M.3
Rodriguez, H.4
Tezak, Z.5
Kondratovich, M.V.6
-
34
-
-
77957731014
-
Peptide lost and found: Internal standards and the mass spectrometric quantification of peptides
-
Hoofnagle, A. N. Peptide lost and found: internal standards and the mass spectrometric quantification of peptides Clin. Chem. 2010, 56 (10) 1515-1517
-
(2010)
Clin. Chem.
, vol.56
, Issue.10
, pp. 1515-1517
-
-
Hoofnagle, A.N.1
-
35
-
-
66149118232
-
Absolute quantification of phosphorylation on the kinase activation loop of cellular focal adhesion kinase by stable isotope dilution liquid chromatography/mass spectrometry
-
Ciccimaro, E.; Hanks, S. K.; Yu, K. H.; Blair, I. A. Absolute quantification of phosphorylation on the kinase activation loop of cellular focal adhesion kinase by stable isotope dilution liquid chromatography/mass spectrometry Anal. Chem. 2009, 81 (9) 3304-3313
-
(2009)
Anal. Chem.
, vol.81
, Issue.9
, pp. 3304-3313
-
-
Ciccimaro, E.1
Hanks, S.K.2
Yu, K.H.3
Blair, I.A.4
-
36
-
-
84878449123
-
Measurement of thyroglobulin by liquid chromatography-tandem mass spectrometry in serum and plasma in the presence of antithyroglobulin autoantibodies
-
Kushnir, M. M.; Rockwood, A. L.; Roberts, W. L.; Abraham, D.; Hoofnagle, A. N.; Meikle, A. W. Measurement of thyroglobulin by liquid chromatography-tandem mass spectrometry in serum and plasma in the presence of antithyroglobulin autoantibodies Clin. Chem. 2013, 59 (6) 982-990
-
(2013)
Clin. Chem.
, vol.59
, Issue.6
, pp. 982-990
-
-
Kushnir, M.M.1
Rockwood, A.L.2
Roberts, W.L.3
Abraham, D.4
Hoofnagle, A.N.5
Meikle, A.W.6
-
37
-
-
80052539443
-
LC-MS/MS in the clinical laboratory-where to from here?
-
Grebe, S. K. G.; Singh, R. J. J. LC-MS/MS in the clinical laboratory-where to from here? Clin. Biochem. Rev. 2011, 32, 5-31
-
(2011)
Clin. Biochem. Rev.
, vol.32
, pp. 5-31
-
-
Grebe, S.K.G.1
Singh, R.J.J.2
-
38
-
-
77956391635
-
Online high-flow peptide immunoaffinity enrichment and nanoflow LC-MS/MS: Assay development for total salivary pepsin/pepsinogen
-
Neubert, H.; Gale, J.; Muirhead, D. Online high-flow peptide immunoaffinity enrichment and nanoflow LC-MS/MS: assay development for total salivary pepsin/pepsinogen Clin. Chem. 2010, 56, 1413-1423
-
(2010)
Clin. Chem.
, vol.56
, pp. 1413-1423
-
-
Neubert, H.1
Gale, J.2
Muirhead, D.3
|