Biochemical characterization of the δ-carbonic anhydrase from the marine diatom Thalassiosira weissflogii, TweCA

Journal of Enzyme Inhibition and Medicinal Chemistry

Volumn 29, Issue 6, 2014, Pages 906-911

  Del Prete, Sonia ^a,b   Vullo, Daniela ^c   De Luca, Viviana ^a,b   Supuran, Claudiu T ^c   Capasso, Clemente ^a,b  

^a INSTITUTE OF PROTEIN BIOCHEMISTRY   (Italy)

^b CNR   (Italy)

^c UNIVERSITY OF FLORENCE   (Italy)

Author keywords

CO2 hydration; Diatoms; Esterase activity; Metalloenzyme; Phylogenetic analysis; Carbonic anhydrase

Indexed keywords

ALPHA CARBONATE DEHYDRATASE; BETA CARBONATE DEHYDRATASE; CARBON DIOXIDE; CARBONATE DEHYDRATASE; DELTA CARBONATE DEHYDRATASE; GAMMA CARBONATE DEHYDRATASE; RECOMBINANT PROTEIN; UNCLASSIFIED DRUG; BICARBONATE; CARBONATE DEHYDRATASE INHIBITOR; SULFONAMIDE;

AMINO ACID SEQUENCE; ARTICLE; CATALYSIS; CATALYST; ENZYME STABILITY; ESCHERICHIA COLI; HYDRATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHOTOSYNTHESIS; PHYLOGENY; PROTEIN EXPRESSION; SEQUENCE ALIGNMENT; THALASSIOSIRA WEISSFLOGII; THERMOSTABILITY; CHEMISTRY; CLASSIFICATION; DIATOM; ENZYMOLOGY; GENE EXPRESSION; GENETICS; KINETICS; METABOLISM; MOLECULAR GENETICS;

BACILLARIOPHYTA; NITZSCHIA ALBA; THALASSIOSIRA WEISSFLOGII;

AMINO ACID SEQUENCE; BICARBONATES; CARBON DIOXIDE; CARBONIC ANHYDRASE INHIBITORS; CARBONIC ANHYDRASES; DIATOMS; ENZYME STABILITY; ESCHERICHIA COLI; GENE EXPRESSION; KINETICS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT; SULFONAMIDES;

EID: 84913594655     PISSN: 14756366     EISSN: 14756374     Source Type: Journal    
DOI: 10.3109/14756366.2013.868599     Document Type: Article

References (34)

1. Fernie AR, Obata T, Allen AE, et al. Leveraging metabolomics for functional investigations in sequenced marine diatoms. Trends Plant Sci 2012;17:395-403.
2. Giordano M, Beardall J, Raven JA. CO2 concentrating mechanisms in algae: mechanisms, environmental modulation, and evolution. Annu Rev Plant Biol 2005;56:99-131.
3. Bowler C, Vardi A, Allen AE. Oceanographic and biogeochemical insights from diatom genomes. Ann Rev Mar Sci 2010;2:333-65.
4. Depauw FA, Rogato A, Ribera d'Alcala M, Falciatore A. Exploring the molecular basis of responses to light in marine diatoms. J Exp Bot 2012;63:1575-91.
5. Ashida H, Saito Y, Kojima C, et al. A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO. Science 2003;302:286-90.
6. Sultemeyer DF, Miller AG, Espie GS, et al. Active CO2 transport by the green alga Chlamydomonas reinhardtii. Plant Physiol 1989;89: 1213-19.
7. Harada H, Nakatsuma D, Ishida M, Matsuda Y. Regulation of the expression of intracellular beta-carbonic anhydrase in response to CO2 and light in the marine diatom Phaeodactylum tricornutum. Plant Physiol 2005;139:1041-50.
8. Tanaka Y, Nakatsuma D, Harada H, et al. Localization of soluble beta-carbonic anhydrase in the marine diatom Phaeodactylum tricornutum. Sorting to the chloroplast and cluster formation on the girdle lamellae. Plant Physiol 2005;138:207-17.
9. Johnston AM, Raven JA, Beardall J, Leegood RC. Carbon fixation. Photosynthesis in a marine diatom. Nature 2001;412:40-1.
10. Roberts K, Granum E, Leegood RC, Raven JA. C3 and C4 pathways of photosynthetic carbon assimilation in marine diatoms are under genetic, not environmental, control. Plant Physiol 2007;145:230-5.
11. Alterio V, Langella E, Viparelli F, et al. Structural and inhibition insights into carbonic anhydrase CDCA1 from the marine diatom Thalassiosira weissflogii. Biochimie 2012;94:1232-41.
12. De Simone G, Supuran CT. (In)organic anions as carbonic anhydrase inhibitors. J Inorg Biochem 2012;111:117-29.
13. Supuran CT. Carbonic anhydrases as drug targets-An overview. Curr Top Med Chem 2007;7:825-33.
14. Supuran CT. Carbonic anhydrases-An overview. Curr Pharm Des 2008;14:603-14.
15. Supuran CT, Scozzafava A. Carbonic anhydrases as targets for medicinal chemistry. Bioorg Med Chem 2007;15:4336-50.
16. Capasso C, De Luca V, Carginale V et al. Biochemical properties of a novel and highly thermostable bacterial alpha-carbonic anhydrase from Sulfurihydrogenibium yellowstonense YO3AOP1. J Enzyme Inhib Med Chem 2012;27:892-7.
17. Capasso C, Supuran CT. Sulfa and trimethoprim-like drugs-Antimetabolites acting as carbonic anhydrase, dihydropteroate synthase and dihydrofolate reductase inhibitors. J Enzyme Inhib Med Chem 2013. [Epub ahead of print]. Doi: 10.3109/14756366.2013.787422.
18. Capasso C, Supuran CT. Anti-infective carbonic anhydrase inhibitors: a patent and literature review. Expert Opin Ther Pat 2013;23: 693-704.
19. Del Prete S, Isik S, Vullo D, et al. DNA cloning, characterization, and inhibition studies of an alpha-carbonic anhydrase from the pathogenic bacterium Vibrio cholerae. J Med Chem 2012;55: 10742-8.
20. Del Prete S, Vullo D, De Luca V, et al. A highly catalytically active gamma-carbonic anhydrase from the pathogenic anaerobe Porphyromonas gingivalis and its inhibition profile with anions and small molecules. Bioorg Med Chem Lett 2013;23:4067-71.
21. Del Prete S, Vullo D, Scozzafava A, et al. Cloning, characterization and anion inhibition study of the d-class carbonic anhydrase (TweCA) from the marine diatom Thalassiosira weissflogii. Bioorg Med Chem. 2013. [Epub ahead of print]. Doi: 10.1016/j.bmc.2013.10.045.
22. Vullo D, Del Prete S, Osman SM, et al. Sulfonamide inhibition studies of the d-carbonic anhydrase from the diatom Thalassiosira weissflogii. Bioorg Med Chem Lett. 2013. [Epub ahead of print]. Doi: 10.1016/j.bmcl.2013.11.021.
23. Lee RBY, Smith JAC, Rickaby REM. Cloning, expression and characterization of the d-carbonic anhydrase of Thalassiosira weissflogii (Bacillariophyceae). J Phycol 2013;49:170-7.
24. Cantalloube H, Labesse G, Chomilier J, et al. Automat and BLAST: comparison of two protein sequence similarity search programs. Comput Appl Biosci 1995;11:261-72.
25. Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003; 52:696-704.
26. Laemmli UK, Favre M. Maturation of the head of bacteriophage T4. I. DNA packaging events. J Mol Biol 1973;80:575-99.
27. Khalifah RG. The carbon dioxide hydration activity of carbonic anhydrase. I. Stop-flow kinetic studies on the native human isoenzymes B and C. J Biol Chem 1971;246:2561-73.
28. Carta F, Temperini C, Innocenti A, et al. Polyamines inhibit carbonic anhydrases by anchoring to the zinc-coordinated water molecule. J Med Chem 2010;53:5511-22.
29. Chirica LC, Elleby B, Jonsson BH, Lindskog S. The complete sequence, expression in Escherichia coli, purification and some properties of carbonic anhydrase from Neisseria gonorrhoeae. Eur J Biochem 1997;244:755-60.
30. Armstrong JM, Myers DV, Verpoorte JA, Edsall JT. Purification and properties of human erythrocyte carbonic anhydrases. J Biol Chem 1966;241:5137-49.
31. Innocenti A, Supuran CT. Paraoxon, 4-nitrophenyl phosphate and acetate are substrates of alpha-but not of beta-, gamma-And zetacarbonic anhydrases. Bioorg Med Chem Lett 2010;20:6208-12.
32. Zhao D, Wu S, Yin Y. Responses of terrestrial ecosystems' net primary productivity to future regional climate change in China. PLoS One 2013;8:e60849.
33. Feely RA, Sabine CL, Lee K, et al. Impact of anthropogenic CO2 on the CaCO3 system in the oceans. Science 2004;305:362-6.
34. Cox EH, McLendon GL, Morel FM, et al. The active site structure of Thalassiosira weissflogii carbonic anhydrase 1. Biochemistry 2000;39:12128-30.