-
1
-
-
3042639887
-
Comparative genomics of the methionine metabolism in gram-positive bacteria: A variety of regulatory systems
-
Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS (2004) Comparative genomics of the methionine metabolism in Gram-positive bacteria: A variety of regulatory systems. Nucleic Acids Res 32: 3340-3353.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 3340-3353
-
-
Rodionov, D.A.1
Vitreschak, A.G.2
Mironov, A.A.3
Gelfand, M.S.4
-
2
-
-
84891631401
-
Control of methionine metabolism by the sahr transcriptional regulator in proteobacteria
-
Novichkov PS, Li X, Kuehl JV, Deutschbauer AM, Arkin AP, et al. (2014) Control of methionine metabolism by the SahR transcriptional regulator in Proteobacteria. Environ Microbiol 16: 1-8.
-
(2014)
Environ Microbiol
, vol.16
, pp. 1-8
-
-
Novichkov, P.S.1
Li, X.2
Kuehl, J.V.3
Deutschbauer, A.M.4
Arkin, A.P.5
-
3
-
-
84864001540
-
Computational analysis of cysteine and methionine metabolism and its regulation in dairy starter and related bacteria
-
Liu M, Prakash C, Nauta A, Siezen RJ, Francke C (2012) Computational analysis of cysteine and methionine metabolism and its regulation in dairy starter and related bacteria. J Bacteriol 194: 3522-3533.
-
(2012)
J Bacteriol
, vol.194
, pp. 3522-3533
-
-
Liu, M.1
Prakash, C.2
Nauta, A.3
Siezen, R.J.4
Francke, C.5
-
4
-
-
0000399066
-
O-succinylhomoserine as an intermediate in the synthesis of cystathionine by escherichia coli
-
Rowbury RJ, Woods DD (1964) O-Succinylhomoserine as an Intermediate in the Synthesis of Cystathionine by Escherichia coli. J Gen Microbiol 36: 341-358.
-
(1964)
J Gen Microbiol
, vol.36
, pp. 341-358
-
-
Rowbury, R.J.1
Woods, D.D.2
-
5
-
-
0028960639
-
A direct sulfhydrylation pathway is used for methionine biosynthesis in pseudomonas aeruginosa
-
Foglino M, Borne F, Bally M, Ball G, Patte JC (1995) A direct sulfhydrylation pathway is used for methionine biosynthesis in Pseudomonas aeruginosa. Microbiology 141 (Pt 2): 431-439.
-
(1995)
Microbiology
, vol.141
, pp. 431-439
-
-
Foglino, M.1
Borne, F.2
Bally, M.3
Ball, G.4
Patte, J.C.5
-
6
-
-
0032580868
-
Isolation and analysis of meta, a methionine biosynthetic gene encoding homoserine acetyltransferase in corynebacterium glutamicum
-
Park SD, Lee JY, Kim Y, Kim JH, Lee HS (1998) Isolation and analysis of metA, a methionine biosynthetic gene encoding homoserine acetyltransferase in Corynebacterium glutamicum. Mol Cells 8: 286-294.
-
(1998)
Mol Cells
, vol.8
, pp. 286-294
-
-
Park, S.D.1
Lee, J.Y.2
Kim, Y.3
Kim, J.H.4
Lee, H.S.5
-
7
-
-
0030747365
-
Homoserine o-acetyltransferase, involved in the leptospira meyeri methionine biosynthetic pathway, is not feedback inhibited
-
Bourhy P, Martel A, Margarita D, Saint Girons I, Belfaiza J (1997) Homoserine O-acetyltransferase, involved in the Leptospira meyeri methionine biosynthetic pathway, is not feedback inhibited. J Bacteriol 179: 4396-4398.
-
(1997)
J Bacteriol
, vol.179
, pp. 4396-4398
-
-
Bourhy, P.1
Martel, A.2
Margarita, D.3
Girons, I.4
Belfaiza, J.5
-
8
-
-
23644442434
-
Evolutionary plasticity of methionine biosynthesis
-
Gophna U, Bapteste E, Doolittle WF, Biran D, Ron EZ (2005) Evolutionary plasticity of methionine biosynthesis. Gene 355: 48-57.
-
(2005)
Gene
, vol.355
, pp. 48-57
-
-
Gophna, U.1
Bapteste, E.2
Doolittle, W.F.3
Biran, D.4
Ron, E.Z.5
-
9
-
-
0023656228
-
Pyridoxal 59phosphate binding site of escherichia coli beta cystathionase and cystathionine gamma synthase comparison of their sequences
-
Martel A, Bouthier de la Tour C, Le Goffic F (1987) Pyridoxal 59phosphate binding site of Escherichia coli beta cystathionase and cystathionine gamma synthase comparison of their sequences. Biochem Biophys Res Commun 147: 565-571.
-
(1987)
Biochem Biophys Res Commun
, vol.147
, pp. 565-571
-
-
Martel, A.1
Bouthier De La Tour, C.2
Le Goffic, F.3
-
10
-
-
0242407548
-
Methionine biosynthesis and its regulation in corynebacterium glutamicum: Parallel pathways of transsulfuration and direct sulfhydrylation
-
Lee HS, Hwang BJ (2003) Methionine biosynthesis and its regulation in Corynebacterium glutamicum: parallel pathways of transsulfuration and direct sulfhydrylation. Appl Microbiol Biotechnol 62: 459-467.
-
(2003)
Appl Microbiol Biotechnol
, vol.62
, pp. 459-467
-
-
Lee, H.S.1
Hwang, B.J.2
-
11
-
-
0000069738
-
Biosynthesis of methionine
-
Neidhardt FC, editor. Washington, DC: American Society for Microbiology
-
Green RC (1994) Biosynthesis of methionine. In: Neidhardt FC, editor. Escherichia coli and Salmonella. Cellular and Molecular Biology. Washington, DC: American Society for Microbiology. 542-561.
-
(1994)
Escherichia Coli and Salmonella Cellular and Molecular Biology
, pp. 542-561
-
-
Green, R.C.1
-
12
-
-
0032560569
-
The specific features of methionine biosynthesis and metabolism in plants
-
Ravanel S, Gakiere B, Job D, Douce R (1998) The specific features of methionine biosynthesis and metabolism in plants. Proc Natl Acad Sci USA 95: 7805-7812.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 7805-7812
-
-
Ravanel, S.1
Gakiere, B.2
Job, D.3
Douce, R.4
-
13
-
-
0041657693
-
A transporter of escherichia coli specific for l- and d-methionine is the prototype for a new family within the abc superfamily
-
Zhang Z, Feige JN, Chang AB, Anderson IJ, Brodianski VM, et al. (2003) A transporter of Escherichia coli specific for L- and D-methionine is the prototype for a new family within the ABC superfamily. Arch Microbiol 180: 88-100.
-
(2003)
Arch Microbiol
, vol.180
, pp. 88-100
-
-
Zhang, Z.1
Feige, J.N.2
Chang, A.B.3
Anderson, I.J.4
Brodianski, V.M.5
-
14
-
-
0002450504
-
Structure and evolution of adomet-dependent methyltransferases
-
Cheng X, Blumenthal RM, editors. Singapore: World Scientific Publishing Co
-
Fauman EB, Blumenthal RM, Cheng X (1999) Structure and evolution of AdoMet-dependent methyltransferases. In: Cheng X, Blumenthal RM, editors. S-adenosylmethionine-dependent Methyltransferases: Structures and Functions. Singapore: World Scientific Publishing Co. 1-38.
-
(1999)
S-adenosylmethionine-dependent Methyltransferases: Structures and Functions
, pp. 1-38
-
-
Fauman, E.B.1
Blumenthal, R.M.2
Cheng, X.3
-
15
-
-
0020284631
-
Pharmacological and biochemical aspects of S-adenosylhomocysteine and S-adenosylhomocysteine hydrolase
-
Ueland PM (1982) Pharmacological and biochemical aspects of S-adenosylhomocysteine and S-adenosylhomocysteine hydrolase. Pharmacol Rev 34: 223- 253.
-
(1982)
Pharmacol Rev
, vol.34
, pp. 223-253
-
-
Ueland, P.M.1
-
16
-
-
77449131884
-
Metabolic characteristics and importance of the universal methionine salvage pathway recycling methionine from 59-methylthioadenosine
-
Albers E (2009) Metabolic characteristics and importance of the universal methionine salvage pathway recycling methionine from 59-methylthioadenosine. IUBMB Life 61: 1132-1142.
-
(2009)
IUBMB Life
, vol.61
, pp. 1132-1142
-
-
Albers, E.1
-
17
-
-
2642542612
-
Bacterial variations on the methionine salvage pathway
-
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, et al. (2004) Bacterial variations on the methionine salvage pathway. BMC Microbiol 4: 9.
-
(2004)
BMC Microbiol
, vol.4
, pp. 9
-
-
Sekowska, A.1
Denervaud, V.2
Ashida, H.3
Michoud, K.4
Haas, D.5
-
18
-
-
81055124167
-
The metj regulon in gammaproteobacteria determined by comparative genomics methods
-
Augustus AM, Spicer LD (2011) The MetJ regulon in gammaproteobacteria determined by comparative genomics methods. BMC Genomics 12: 558.
-
(2011)
BMC Genomics
, vol.12
, pp. 558
-
-
Augustus, A.M.1
Spicer, L.D.2
-
19
-
-
0024311293
-
Methionine synthesis in escherichia coli: Effect of the metr protein on mete and meth expression
-
Cai XY, Maxon ME, Redfield B, Glass R, Brot N, et al. (1989) Methionine synthesis in Escherichia coli: effect of the MetR protein on metE and metH expression. Proc Natl Acad Sci USA 86: 4407-4411.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 4407-4411
-
-
Cai, X.Y.1
Maxon, M.E.2
Redfield, B.3
Glass, R.4
Brot, N.5
-
20
-
-
0026598908
-
Regulation of the salmonella typhimurium metA gene by the metr protein and homocysteine
-
Mares R, Urbanowski ML, Stauffer GV (1992) Regulation of the Salmonella typhimurium metA gene by the MetR protein and homocysteine. J Bacteriol 174: 390-397.
-
(1992)
J Bacteriol
, vol.174
, pp. 390-397
-
-
Mares, R.1
Urbanowski, M.L.2
Stauffer, G.V.3
-
21
-
-
0024336687
-
Role of homocysteine in metr-mediated activation of the mete and meth genes in salmonella typhimurium and escherichia coli
-
Urbanowski ML, Stauffer GV (1989) Role of homocysteine in MetR-mediated activation of the metE and metH genes in Salmonella typhimurium and Escherichia coli. J Bacteriol 171: 3277-3281.
-
(1989)
J Bacteriol
, vol.171
, pp. 3277-3281
-
-
Urbanowski, M.L.1
Stauffer, G.V.2
-
22
-
-
0027236904
-
Regulation of the salmonella typhimurium metf gene by the metr protein
-
Cowan JM, Urbanowski ML, Talmi M, Stauffer GV (1993) Regulation of the Salmonella typhimurium metF gene by the MetR protein. J Bacteriol 175: 5862- 5866.
-
(1993)
J Bacteriol
, vol.175
, pp. 5862-5866
-
-
Cowan, J.M.1
Urbanowski, M.L.2
Talmi, M.3
Stauffer, G.V.4
-
23
-
-
84868355628
-
Metr-regulated vibrio cholerae metabolism is required for virulence
-
Bogard RW, Davies BW, Mekalanos JJ (2012) MetR-regulated Vibrio cholerae metabolism is required for virulence. MBio 3.
-
(2012)
MBio
, pp. 3
-
-
Bogard, R.W.1
Davies, B.W.2
Mekalanos, J.J.3
-
24
-
-
35448998130
-
Transcriptional regulation of the methionine and cysteine transport and metabolism in streptococci
-
Kovaleva GY, Gelfand MS (2007) Transcriptional regulation of the methionine and cysteine transport and metabolism in streptococci. FEMS Microbiol Lett 276: 207-215.
-
(2007)
FEMS Microbiol Lett
, vol.276
, pp. 207-215
-
-
Kovaleva, G.Y.1
Gelfand, M.S.2
-
25
-
-
18944364877
-
Sulfur amino acid metabolism and its control in lactococcus lactis il1403
-
Sperandio B, Polard P, Ehrlich DS, Renault P, Guedon E (2005) Sulfur amino acid metabolism and its control in Lactococcus lactis IL1403. J Bacteriol 187: 3762-3778.
-
(2005)
J Bacteriol
, vol.187
, pp. 3762-3778
-
-
Sperandio, B.1
Polard, P.2
Ehrlich, D.S.3
Renault, P.4
Guedon, E.5
-
26
-
-
34948881211
-
Control of methionine synthesis and uptake by metr and homocysteine in streptococcus mutans
-
Sperandio B, Gautier C, McGovern S, Ehrlich DS, Renault P, et al. (2007) Control of methionine synthesis and uptake by MetR and homocysteine in Streptococcus mutans. J Bacteriol 189: 7032-7044.
-
(2007)
J Bacteriol
, vol.189
, pp. 7032-7044
-
-
Sperandio, B.1
Gautier, C.2
McGovern, S.3
Ehrlich, D.S.4
Renault, P.5
-
27
-
-
18444409651
-
The mcbr repressor modulated by the effector substance s-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of corynebacterium glutamicum ATCC 13032
-
Rey DA, Nentwich SS, Koch DJ, Ruckert C, Puhler A, et al. (2005) The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032. Mol Microbiol 56: 871-887.
-
(2005)
Mol Microbiol
, vol.56
, pp. 871-887
-
-
Rey, D.A.1
Nentwich, S.S.2
Koch, D.J.3
Ruckert, C.4
Puhler, A.5
-
28
-
-
78650677016
-
Identification of mcbr as transcription regulator of aecd and genes involved in methionine and cysteine biosynthesis in corynebacterium jeikeium k411
-
Brune I, Barzantny H, Klotzel M, Jones J, James G, et al. (2011) Identification of McbR as transcription regulator of aecD and genes involved in methionine and cysteine biosynthesis in Corynebacterium jeikeium K411. J Biotechnol 151: 22- 29.
-
(2011)
J Biotechnol
, vol.151
, pp. 22-29
-
-
Brune, I.1
Barzantny, H.2
Klotzel, M.3
Jones, J.4
James, G.5
-
29
-
-
42149091618
-
Riboswitches that sense S-adenosylmethionine and s-adenosylhomocysteine
-
Wang JX, Breaker RR (2008) Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine. Biochem Cell Biol 86: 157-168.
-
(2008)
Biochem Cell Biol
, vol.86
, pp. 157-168
-
-
Wang, J.X.1
Breaker, R.R.2
-
30
-
-
84908077361
-
Common themes and differences in SAM recognition among SAM riboswitches
-
Price IR, Grigg JC, Ke A (2014) Common themes and differences in SAM recognition among SAM riboswitches. Biochim Biophys Acta.
-
(2014)
Biochim Biophys Acta
-
-
Price, I.R.1
Grigg, J.C.2
Ke, A.3
-
31
-
-
84855724406
-
Recognition of s-adenosylmethionine by riboswitches
-
Batey RT (2011) Recognition of S-adenosylmethionine by riboswitches. Wiley Interdiscip Rev RNA 2: 299-311.
-
(2011)
Wiley Interdiscip Rev RNA
, vol.2
, pp. 299-311
-
-
Batey, R.T.1
-
32
-
-
84883189709
-
Comparative genomics of metabolic capacities of regulons controlled by cisregulatory RNA motifs in bacteria
-
Sun EI, Leyn SA, Kazanov MD, Saier MH Jr, Novichkov PS, et al. (2013) Comparative genomics of metabolic capacities of regulons controlled by cisregulatory RNA motifs in bacteria. BMC Genomics 14: 597.
-
(2013)
BMC Genomics
, vol.14
, pp. 597
-
-
Sun, E.I.1
Leyn, S.A.2
Kazanov, M.D.3
Saier, M.H.4
Novichkov, P.S.5
-
33
-
-
32044442926
-
Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria
-
Corbino KA, Barrick JE, Lim J, Welz R, Tucker BJ, et al. (2005) Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria. Genome Biol 6: 70.
-
(2005)
Genome Biol
, vol.6
, pp. 70
-
-
Corbino, K.A.1
Barrick, J.E.2
Lim, J.3
Welz, R.4
Tucker, B.J.5
-
34
-
-
40849147457
-
Riboswitches that sense S-adenosylhomocysteine and activate genes involved in coenzyme recycling
-
Wang JX, Lee ER, Morales DR, Lim J, Breaker RR (2008) Riboswitches that sense S-adenosylhomocysteine and activate genes involved in coenzyme recycling. Mol Cell 29: 691-702.
-
(2008)
Mol Cell
, vol.29
, pp. 691-702
-
-
Wang, J.X.1
Lee, E.R.2
Morales, D.R.3
Lim, J.4
Breaker, R.R.5
-
36
-
-
40849104495
-
The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches
-
Weinberg Z, Regulski EE, Hammond MC, Barrick JE, Yao Z, et al. (2008) The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches. RNA 14: 822-828.
-
(2008)
RNA
, vol.14
, pp. 822-828
-
-
Weinberg, Z.1
Regulski, E.E.2
Hammond, M.C.3
Barrick, J.E.4
Yao, Z.5
-
37
-
-
70350111141
-
A variant riboswitch aptamer class for S-adenosylmethionine common in marine bacteria
-
Poiata E, Meyer MM, Ames TD, Breaker RR (2009) A variant riboswitch aptamer class for S-adenosylmethionine common in marine bacteria. RNA 15: 2046-2056.
-
(2009)
RNA
, vol.15
, pp. 2046-2056
-
-
Poiata, E.1
Meyer, M.M.2
Ames, T.D.3
Breaker, R.R.4
-
38
-
-
77951606278
-
Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes
-
Weinberg Z, Wang JX, Bogue J, Yang J, Corbino K, et al. (2010) Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes. Genome Biol 11: 31.
-
(2010)
Genome Biol
, vol.11
, pp. 31
-
-
Weinberg, Z.1
Wang, J.X.2
Bogue, J.3
Yang, J.4
Corbino, K.5
-
39
-
-
0012567905
-
The T box and S box transcription termination control systems
-
Grundy FJ, Henkin TM (2003) The T box and S box transcription termination control systems. Front Biosci 8: 20-31.
-
(2003)
Front Biosci
, vol.8
, pp. 20-31
-
-
Grundy, F.J.1
Henkin, T.M.2
-
40
-
-
75549088819
-
MicrobesOnline: An integrated portal for comparative and functional genomics
-
Dehal PS, Joachimiak MP, Price MN, Bates JT, Baumohl JK, et al. (2010) MicrobesOnline: An integrated portal for comparative and functional genomics. Nucleic Acids Res 38: 396-400.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 396-400
-
-
Dehal, P.S.1
Joachimiak, M.P.2
Price, M.N.3
Bates, J.T.4
Baumohl, J.K.5
-
41
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Syst Biol 59: 307-321.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
-
43
-
-
41849131511
-
Transcriptional regulation of NAD metabolism in bacteria: Genomic reconstruction of NiaR (YrxA) regulon
-
Rodionov DA, Li X, Rodionova IA, Yang C, Sorci L, et al. (2008) Transcriptional regulation of NAD metabolism in bacteria: genomic reconstruction of NiaR (YrxA) regulon. Nucleic Acids Res 36: 2032-2046.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 2032-2046
-
-
Rodionov, D.A.1
Li, X.2
Rodionova, I.A.3
Yang, C.4
Sorci, L.5
-
44
-
-
41849121949
-
Transcriptional regulation of NAD metabolism in bacteria: NrtR family of Nudix-related regulators
-
Rodionov DA, De Ingeniis J, Mancini C, Cimadamore F, Zhang H, et al. (2008) Transcriptional regulation of NAD metabolism in bacteria: NrtR family of Nudix-related regulators. Nucleic Acids Res 36: 2047-2059.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 2047-2059
-
-
Rodionov, D.A.1
De Ingeniis, J.2
Mancini, C.3
Cimadamore, F.4
Zhang, H.5
-
45
-
-
58149479236
-
Comparative genomics of regulation of fatty acid and branched-chain amino acid utilization in proteobacteria
-
Kazakov AE, Rodionov DA, Alm E, Arkin AP, Dubchak I, et al. (2009) Comparative genomics of regulation of fatty acid and branched-chain amino acid utilization in proteobacteria. J Bacteriol 191: 52-64.
-
(2009)
J Bacteriol
, vol.191
, pp. 52-64
-
-
Kazakov, A.E.1
Rodionov, D.A.2
Alm, E.3
Arkin, A.P.4
Dubchak, I.5
-
46
-
-
33744821614
-
Transcript analysis reveals an extended regulon and the importance of proteinprotein co-operativity for the Escherichia coli methionine repressor
-
Marincs F, Manfield IW, Stead JA, McDowall KJ, Stockley PG (2006) Transcript analysis reveals an extended regulon and the importance of proteinprotein co-operativity for the Escherichia coli methionine repressor. Biochem J 396: 227-234.
-
(2006)
Biochem J
, vol.396
, pp. 227-234
-
-
Marincs, F.1
Manfield, I.W.2
Stead, J.A.3
McDowall, K.J.4
Stockley, P.G.5
-
47
-
-
77954254495
-
RegPredict: An integrated system for regulon inference in prokaryotes by comparative genomics approach
-
Novichkov PS, Rodionov DA, Stavrovskaya ED, Novichkova ES, Kazakov AE, et al. (2010) RegPredict: An integrated system for regulon inference in prokaryotes by comparative genomics approach. Nucleic Acids Res 38: 299-307.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 299-307
-
-
Novichkov, P.S.1
Rodionov, D.A.2
Stavrovskaya, E.D.3
Novichkova, E.S.4
Kazakov, A.E.5
-
48
-
-
34548219522
-
Comparative genomic reconstruction of transcriptional regulatory networks in bacteria
-
Rodionov DA (2007) Comparative genomic reconstruction of transcriptional regulatory networks in bacteria. Chem Rev 107: 3467-3497.
-
(2007)
Chem Rev
, vol.107
, pp. 3467-3497
-
-
Rodionov, D.A.1
-
49
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar RC (2004) MUSCLE: A multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
50
-
-
84874266637
-
Rfam 11.0: 10 years of RNA families
-
Burge SW, Daub J, Eberhardt R, Tate J, Barquist L, et al. (2013) Rfam 11.0: 10 years of RNA families. Nucleic Acids Res 41: 226-232.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 226-232
-
-
Burge, S.W.1
Daub, J.2
Eberhardt, R.3
Tate, J.4
Barquist, L.5
-
51
-
-
84890037468
-
Infernal 1.1: 100-fold faster RNA homology searches
-
Nawrocki EP, Eddy SR (2013) Infernal 1.1: 100-fold faster RNA homology searches. Bioinformatics 29: 2933-2935.
-
(2013)
Bioinformatics
, vol.29
, pp. 2933-2935
-
-
Nawrocki, E.P.1
Eddy, S.R.2
-
52
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
53
-
-
84886739636
-
Regprecise 3.0-A resource for genome-scale exploration of transcriptional regulation in bacteria
-
Novichkov PS, Kazakov AE, Ravcheev DA, Leyn SA, Kovaleva GY, et al. (2013) RegPrecise 3.0-a resource for genome-scale exploration of transcriptional regulation in bacteria. BMC Genomics 14: 745.
-
(2013)
BMC Genomics
, vol.14
, pp. 745
-
-
Novichkov, P.S.1
Kazakov, A.E.2
Ravcheev, D.A.3
Leyn, S.A.4
Kovaleva, G.Y.5
-
55
-
-
84891783174
-
Activities at the universal protein resource (uniprot)
-
UniProt C (2014) Activities at the Universal Protein Resource (UniProt). Nucleic Acids Res 42: 191-198.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 191-198
-
-
Uniprot, C.1
-
56
-
-
84891782659
-
Pfam: The protein families database
-
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, et al. (2014) Pfam: the protein families database. Nucleic Acids Res 42: 222-230.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 222-230
-
-
Finn, R.D.1
Bateman, A.2
Clements, J.3
Coggill, P.4
Eberhardt, R.Y.5
-
57
-
-
25644458211
-
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
-
Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, et al. (2005) The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res 33: 5691-5702.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5691-5702
-
-
Overbeek, R.1
Begley, T.2
Butler, R.M.3
Choudhuri, J.V.4
Chuang, H.Y.5
-
58
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa M, Goto S (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28: 27-30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
59
-
-
21144443562
-
Homocysteine toxicity in escherichia coli is caused by a perturbation of branched-chain amino acid biosynthesis
-
Tuite NL, Fraser KR, O'Byrne CP (2005) Homocysteine toxicity in Escherichia coli is caused by a perturbation of branched-chain amino acid biosynthesis. J Bacteriol 187: 4362-4371.
-
(2005)
J Bacteriol
, vol.187
, pp. 4362-4371
-
-
Tuite, N.L.1
Fraser, K.R.2
O'Byrne, C.P.3
-
60
-
-
33947420458
-
Nitric oxide in chemostat-cultured escherichia coli is sensed by fnr and other global regulators: Unaltered methionine biosynthesis indicates lack of s nitrosation
-
Pullan ST, Gidley MD, Jones RA, Barrett J, Stevanin TM, et al. (2007) Nitric oxide in chemostat-cultured Escherichia coli is sensed by Fnr and other global regulators: unaltered methionine biosynthesis indicates lack of S nitrosation. J Bacteriol 189: 1845-1855.
-
(2007)
J Bacteriol
, vol.189
, pp. 1845-1855
-
-
Pullan, S.T.1
Gidley, M.D.2
Jones, R.A.3
Barrett, J.4
Stevanin, T.M.5
-
61
-
-
78651323093
-
Rfam: Wikipedia, clans and the decimal release
-
Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, et al. (2011) Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Res 39: 141-145.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 141-145
-
-
Gardner, P.P.1
Daub, J.2
Tate, J.3
Moore, B.L.4
Osuch, I.H.5
-
62
-
-
0034928664
-
The methionine biosynthetic pathway from homoserine in pseudomonas putida involves the metw, metx, metz, meth and mete gene products
-
Alaminos M, Ramos JL (2001) The methionine biosynthetic pathway from homoserine in Pseudomonas putida involves the metW, metX, metZ, metH and metE gene products. Arch Microbiol 176: 151-154.
-
(2001)
Arch Microbiol
, vol.176
, pp. 151-154
-
-
Alaminos, M.1
Ramos, J.L.2
|