Spread and predominance in Japan of novel G1P[8] double-reassortant rotavirus strains possessing a DS-1-like genotype constellation typical of G2P[4] strains

Infection, Genetics and Evolution

Volumn 28, Issue , 2014, Pages 426-433

  Fujii, Yoshiki ^a   Nakagomi, Toyoko ^b   Nishimura, Naoko ^c   Noguchi, Atsuko ^d   Miura, Sinobu ^e   Ito, Hisato ^f   Doan, Yen Hai ^b   Takahashi, Tsutomu ^d   Ozaki, Takao ^c   Katayama, Kazuhiko ^a   Nakagomi, Osamu ^b  

^a NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

^b NAGASAKI UNIVERSITY   (Japan)

^c Aichi Prefectural Welfare Federation of Agriculture Co operative Associations Konan Kosei Hospital   (Japan)

^d AKITA UNIVERSITY   (Japan)

^e Yuri Kumiai General Hospital   (Japan)

^f NANTAN GENERAL HOSPITAL   (Japan)

Author keywords

Evolution; Genotype constellation; Reassortment; Rotavirus

Indexed keywords

ROTAVIRUS VACCINE; VIRUS RNA;

ARTICLE; CONTROLLED STUDY; GENETIC REASSORTMENT; GENOTYPE; JAPAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; ROTAVIRUS; ROTAVIRUS G1P[8]; ROTAVIRUS G2P[4]; UNINDEXED SEQUENCE; VIRUS GENOME; VIRUS STRAIN; BIOLOGY; CLASSIFICATION; DNA SEQUENCE; GENETICS; HEALTH SURVEY; HUMAN; MOLECULAR GENETICS; ROTAVIRUS INFECTIONS; VIROLOGY;

ROTAVIRUS;

COMPUTATIONAL BIOLOGY; GENOME, VIRAL; GENOTYPE; HUMANS; JAPAN; MOLECULAR SEQUENCE DATA; PHYLOGENY; POPULATION SURVEILLANCE; REASSORTANT VIRUSES; RNA, VIRAL; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ANALYSIS, DNA;

EID: 84912573502     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2014.08.001     Document Type: Article

References (37)

1. Abdel-Haq N.M., Thomas R.A., Asmar B.I., Zacharova V., Lyman W.D. Increased prevalence of G1P[4] genotype among children with rotavirus-associated gastroenteritis in metropolitan Detroit. J. Clin. Microbiol. 2003, 41:2680-2682.
2. Adhikary A.K., Zhou Y., Kakizawa J., Numaga J., Akihara S., Fang Z.Y., Ushijima H. Distribution of rotavirus VP4 genotype and VP7 serotype among Chinese children. Acta Paediatr. Jpn. 1998, 40:641-643.
3. Ahmed K., Nakagomi T., Nakagomi O. Isolation and molecular characterization of a naturally occurring non-structural protein 5 (NSP5) gene reassortant of group A rotavirus of serotype G2P[4] with a long RNA pattern. J. Med. Virol. 2005, 77:323-330.
4. Asmah R.H., Green J., Armah G.E., Gallimore C.I., Gray J.J., Iturriza-Gomara M., Anto F., Oduro A., Binka F.N., Brown D.W., Cutts F. Rotavirus G and P genotypes in rural Ghana. J. Clin. Microbiol. 2001, 39:1981-1984.
5. Banyai K., Laszlo B., Duque J., Steele A.D., Nelson E.A., Gentsch J.R., Parashar U.D. Systematic review of regional and temporal trends in global rotavirus strain diversity in the pre rotavirus vaccine era: insights for understanding the impact of rotavirus vaccination programs. Vaccine 2012, 30(Suppl. 1):A122-A130.
6. Building laboratory capacity to support the global rotavirus surveillance network. Morb. Mort. Wkly. Rep. 2013, 62:409-411. Centers of Disease Control and Prevention.
7. Doan Y.H., Nakagomi T., Nakagomi O. Repeated circulation over 6 years of intergenogroup mono-reassortant G2P[4] rotavirus strains with genotype N1 of the NSP2 gene. Infect. Genet. Evol. 2012, 12:1202-1212.
8. Duan Z.J., Liu N., Yang S.H., Zhang J., Sun L.W., Tang J.Y., Jin Y., Du Z.Q., Xu J., Wu Q.B., Tong Z.L., Gong S.T., Qian Y., Ma J.M., Liao X.C., Widdowson M.A., Jiang B., Fang Z.Y. Hospital-based surveillance of rotavirus diarrhea in the People's Republic of China, August 2003-July 2007. J. Infect. Dis. 2009, 200(Suppl. 1):S167-S173.
9. Estes M.K., Greenberg H.B. Rotaviruses. Fields Virology 2013, 1347-1401. Wolters Kluwer/Lippincott Williams & Wilkins, Philadelphia. sixth ed. D.M. Knipe, P.M. Howley (Eds.).
10. Fang Z.Y., Yang H., Qi J., Zhang J., Sun L.W., Tang J.Y., Ma L., Du Z.Q., He A.H., Xie J.P., Lu Y.Y., Ji Z.Z., Zhu B.Q., Wu H.Y., Lin S.E., Xie H.P., Griffin D.D., Ivanoff B., Glass R.I., Gentsch J.R. Diversity of rotavirus strains among children with acute diarrhea in China: 1998-2000 surveillance study. J. Clin. Microbiol. 2002, 40:1875-1878.
11. Fang Z.Y., Wang B., Kilgore P.E., Bresee J.S., Zhang L.J., Sun L.W., Du Z.Q., Tang J.Y., Hou A.C., Shen H., Song X.B., Nyambat B., Hummelman E., Xu Z.Y., Glass R.I. Sentinel hospital surveillance for rotavirus diarrhea in the People's Republic of China, August 2001-July 2003. J. Infect. Dis. 2005, 192(Suppl. 1):S94-S99.
12. Fujii Y., Shimoike T., Takagi H., Murakami K., Todaka-Takai R., Park Y., Katayama K. Amplification of all 11 RNA segments of group A rotaviruses based on reverse transcription polymerase chain reaction. Microbiol. Immunol. 2012, 56:630-638.
13. Gentsch J.R., Laird A.R., Bielfelt B., Griffin D.D., Banyai K., Ramachandran M., Jain V., Cunliffe N.A., Nakagomi O., Kirkwood C.D., Fischer T.K., Parashar U.D., Bresee J.S., Jiang B., Glass R.I. Serotype diversity and reassortment between human and animal rotavirus strains: implications for rotavirus vaccine programs. J. Infect. Dis. 2005, 192(Suppl. 1):S146-S159.
14. Ghosh S., Adachi N., Gatheru Z., Nyangao J., Yamamoto D., Ishino M., Urushibara N., Kobayashi N. Whole-genome analysis reveals the complex evolutionary dynamics of Kenyan G2P[4] human rotavirus strains. J. Gen. Virol. 2011, 92:2201-2208.
15. Heiman E.M., McDonald S.M., Barro M., Taraporewala Z.F., Bar-Magen T., Patton J.T. Group A human rotavirus genomics: evidence that gene constellations are influenced by viral protein interactions. J. Virol. 2008, 82:11106-11116.
16. Iturriza-Gomara M., Dallman T., Banyai K., Bottiger B., Buesa J., Diedrich S., Fiore L., Johansen K., Koopmans M., Korsun N., Koukou D., Kroneman A., Laszlo B., Lappalainen M., Maunula L., Marques A.M., Matthijnssens J., Midgley S., Mladenova Z., Nawaz S., Poljsak-Prijatelj M., Pothier P., Ruggeri F.M., Sanchez-Fauquier A., Steyer A., Sidaraviciute-Ivaskeviciene I., Syriopoulou V., Tran A.N., Usonis V., Van Ranst M., Rougemont A D.E., Gray J. Rotavirus genotypes co-circulating in Europe between 2006 and 2009 as determined by EuroRotaNet, a pan-European collaborative strain surveillance network. Epidemiol. Infect. 2011, 139:895-909.
17. Kaga E., Iizuka M., Nakagomi T., Nakagomi O. The distribution of G (VP7) and P (VP4) serotypes among human rotaviruses recovered from Japanese children with diarrhea. Microbiol. Immunol. 1994, 38:317-320.
18. Kuzuya M., Fujii R., Hamano M., Kida K., Mizoguchi Y., Kanadani T., Nishimura K., Kishimoto T. Prevalence and molecular characterization of G1P[8] human rotaviruses possessing DS-1-like VP6, NSP4, and NSP5/6 in Japan. J. Med. Virol. 2013, 86:1056-1064.
19. Li D.D., Liu N., Yu J.M., Zhang Q., Cui S.X., Zhang D.L., Yang S.H., Cao D.J., Xu Z.Q., Duan Z.J. Molecular epidemiology of G9 rotavirus strains in children with diarrhoea hospitalized in Mainland China from January 2006 to December 2007. Vaccine 2009, 27(Suppl. 5):F40-F45.
20. Maes P., Matthijnssens J., Rahman M., Van Ranst M. RotaC: a web-based tool for the complete genome classification of group A rotaviruses. BMC Microbiol. 2009, 9:238.
21. Matthijnssens J., Ciarlet M., Heiman E., Arijs I., Delbeke T., McDonald S.M., Palombo E.A., Iturriza-Gomara M., Maes P., Patton J.T., Rahman M., Van Ranst M. Full genome-based classification of rotaviruses reveals a common origin between human Wa-Like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J. Virol. 2008, 82:3204-3219.
22. Matthijnssens J., Ciarlet M., Rahman M., Attoui H., Banyai K., Estes M.K., Gentsch J.R., Iturriza-Gomara M., Kirkwood C.D., Martella V., Mertens P.P., Nakagomi O., Patton J.T., Ruggeri F.M., Saif L.J., Santos N., Steyer A., Taniguchi K., Desselberger U., Van Ranst M. Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments. Arch. Virol. 2008, 153:1621-1629.
23. Matthijnssens J., Ciarlet M., McDonald S.M., Attoui H., Banyai K., Brister J.R., Buesa J., Esona M.D., Estes M.K., Gentsch J.R., Iturriza-Gomara M., Johne R., Kirkwood C.D., Martella V., Mertens P.P., Nakagomi O., Parreno V., Rahman M., Ruggeri F.M., Saif L.J., Santos N., Steyer A., Taniguchi K., Patton J.T., Desselberger U., Van Ranst M. Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG). Arch. Virol. 2011, 156:1397-1413.
24. Nakagomi T., Nakagomi O. RNA-RNA hybridization indentifies a human rotavirus that is genetically related to feline rotavirus. J. Virol. 1989, 63:1431-1434.
25. Nakagomi O., Nakagomi T. Molecular evidence for naturally occurring single VP7 gene substitution reassortant between human rotaviruses belonging to two different genogroups. Arch. Virol. 1991, 119:67-81.
26. Nakagomi O., Nakagomi T., Akatani K., Ikegami N. Identification of rotavirus genogroups by RNA-RNA hybridization. Mol. Cell. Probes 1989, 3:251-261.
27. Nakagomi T., Gentsch J.R., Das B.K., Kumar R., Bhan M.K., Glass R.I., Nakagomi O. Molecular characterization of serotype G2 and G3 human rotavirus strains that have an apparently identical electropherotype of the short RNA pattern. Arch. Virol. 2002, 147:2187-2195.
28. Nakagomi T., Kato K., Tsutsumi H., Nakagomi O. The burden of rotavirus gastroenteritis among Japanese children during its peak months: an internet survey. Jpn. J. Infect. Dis. 2013, 66:269-275.
29. Rosa E., Silva M.L., Pires De Carvalho I., Gouvea V. 1998-1999 rotavirus seasons in Juiz de Fora, Minas Gerais, Brazil: detection of an unusual G3P[4] epidemic strain. J. Clin. Microbiol. 2002, 40:2837-2842.
30. Santos N., Hoshino Y. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev. Med. Virol. 2005, 15:29-56.
31. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
32. Tate J.E., Burton A.H., Boschi-Pinto C., Steele A.D., Duque J., Parashar U.D. 2008 estimate of worldwide rotavirus-associated mortality in children younger than 5years before the introduction of universal rotavirus vaccination programmes: a systematic review and meta-analysis. Lancet Infect. Dis. 2012, 12:136-141.
33. Tran T.N., Nakagomi T., Nakagomi O. Evidence for genetic reassortment between human rotaviruses by full genome sequencing of G3p[4] and G2p[4] strains co-circulating in India. Trop. Med. Health 2013, 41:13-20.
34. Ward R.L., Nakagomi O., Knowlton D.R., McNeal M.M., Nakagomi T., Clemens J.D., Sack D.A., Schiff G.M. Evidence for natural reassortants of human rotaviruses belonging to different genogroups. J. Virol. 1990, 64:3219-3225.
35. Ward R.L., Nakagomi O., Knowlton D.R., McNeal M.M., Nakagomi T., Huda N., Clemens J.D., Sack D.A. Formation and selection of intergenogroup reassortants during cell culture adaptation of rotaviruses from dually infected subjects. J. Virol. 1991, 65:2699-2701.
36. Wu H., Taniguchi K., Wakasugi F., Ukae S., Chiba S., Ohseto M., Hasegawa A., Urasawa T., Urasawa S. Survey on the distribution of the gene 4 alleles of human rotaviruses by polymerase chain reaction. Epidemiol. Infect. 1994, 112:615-622.
37. Yamamoto S.P., Kaida A., Kubo H., Iritani N. Gastroenteritis outbreaks caused by a DS-1-like G1P[8] rotavirus strain, Japan, 2012-2013. Emerg. Infect. Dis. 2014, 20:1030-1033.