Prevalence and molecular characterization of G1P[8] human rotaviruses possessing DS-1-like VP6, NSP4, and NSP5/6 in Japan

Journal of Medical Virology

Volumn 86, Issue 6, 2014, Pages 1056-1064

  Kuzuya, Mitsutaka ^a   Fujii, Ritsushi ^a   Hamano, Masako ^a   Kida, Koji ^a   Mizoguchi, Yoshinori ^a   Kanadani, Tomohisa ^b   Nishimura, Keiko ^b   Kishimoto, Toshio ^a  

^a Okayama Prefectural Institute for Environmental Science and Public Health   (Japan)

^b NATIONAL HOSPITAL ORGANIZATION   (Japan)

Author keywords

Genotype constellation; Human rotavirus; Intergenogroup reassortment; Japan; Phylogenetic analysis

Indexed keywords

NONSTRUCTURAL PROTEIN 5; PROTEIN VP4; PROTEIN VP6; PROTEIN VP7; ROTAVIRUS NONSTRUCTURAL PROTEIN 4; CAPSID PROTEIN; VIRUS ANTIGEN; VIRUS PROTEIN; VIRUS RNA; VP6 PROTEIN, ROTAVIRUS;

ARTICLE; GENETIC REASSORTMENT; GENOTYPE; HUMAN ROTAVIRUS; JAPAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRUS GENE; VIRUS ISOLATION; ADOLESCENT; CHILD; CLASSIFICATION; DNA SEQUENCE; EPIDEMIOLOGY; FEMALE; GENETIC VARIABILITY; GENETICS; HUMAN; INFANT; ISOLATION AND PURIFICATION; MALE; MOLECULAR EPIDEMIOLOGY; MOLECULAR GENETICS; PRESCHOOL CHILD; PREVALENCE; ROTAVIRUS; ROTAVIRUS INFECTIONS; VIROLOGY;

HUMAN ROTAVIRUS A; ROTAVIRUS;

ADOLESCENT; ANTIGENS, VIRAL; CAPSID PROTEINS; CHILD; CHILD, PRESCHOOL; FEMALE; GENETIC VARIATION; GENOTYPE; HUMANS; INFANT; JAPAN; MALE; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; PREVALENCE; RNA, VIRAL; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ANALYSIS, DNA; VIRAL NONSTRUCTURAL PROTEINS;

EID: 84897965233     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.23746     Document Type: Article

References (37)

1. Abdel-Haq NM, Thomas RA, Asmar BI, Zacharova V, Lyman WD. 2003. Increased prevalence of G1P[4] genotype among children with rotavirus-associated gastroenteritis in metropolitan Detroit. J Clin Microbiol 41:2680-2682.
2. Ball LA. 2005. The universal taxonomy of viruses in theory and practice. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA, editors. Virus taxonomy: Eight report of the international committee on taxonomy of viruses. Amsterdam/Holland: Elsevier/Academic Press. pp 3-8.
3. Cashman O, Collins PJ, Lennon G, Cryan B, Martella V, Fanning S, Staines A, O'Shea H. 2011. Molecular characterization of group A rotaviruses detected in children with gastroenteritis in Ireland in 2006-2009. Epidemiol Infect 14:1-13.
4. Doan YH, Nakagomi T, Nakagomi O. 2012. Repeated circulation over 6 years of intergenogroup mono-reassortant G2P[4] rotavirus strains with genotype N1 of the NSP2 gene. Infect Genet Evol 12:1202-1212.
5. Estes MK, Kapikian AZ. 2007. Rotaviruses. In: Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE, editors. Fields virology. 5th edition. Philadelphia, PA: Lippincott Williams & Wilkins. pp 1917-1974.
6. Gentsch JR, Laird AR, Bielfelt B, Griffin DD, Banyai K, Ramachandran M, Jain V, Cunliffe NA, Nakagomi O, Kirkwood CD, Fischer TK, Parashar UD, Bresee JS, Jiang B, Glass RI. 2005. Serotype diversity and reassortment between human and animal rotavirus strains: Implications for rotavirus vaccine programs. J Infect Dis 192:S146-S159.
7. Gouvea V, Glass RI, Woods P, Taniguchi K, Clark HF, Forrester B, Fang ZY. 1990. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J Clin Microbiol 28:276-282.
8. Heiman EM, McDonald SM, Barro M, Taraporewala ZF, Bar-Magen T, Patton JT. 2008. Group A human rotavirus genomics: Evidence that gene constellations are influenced by viral protein interactions. J Virol 82:11106-11116.
9. Higgins DG, Thompson JD, Gibson TJ. 1996. Using CLUSTAL for multiple sequence alignments. Methods Enzymol 266:383-402.
10. Iturriza-Gómara M, Green J, Brown DW, Desselberger U, Gray J. 2000. Diversity within the VP4 gene of rotavirus P[8] strains: Implications for reverse transcription-PCR genotyping. J Clin Microbiol 38:898-901.
11. Iturriza-Gómara M, Isherwood B, Desselberger U, Gray J. 2001. Reassortment in vivo: Driving force for diversity of human rotavirus strains isolated in the United Kingdom between 1995 and 1999. J Virol 75:3696-3705.
12. Kalica AR, Greenberg HB, Espejo RT, Flores J, Wyatt RG, Kapikian AZ, Chanock RM. 1981. Distinctive ribonucleic acid patterns of human rotavirus subgroups 1 and 2. Infect Immun 33:958-961.
13. Kuzuya M, Fujii R, Hamano M, Kida K, Kanadani T, Nishimura K, Kishimoto T. 2012. Molecular characterization of OP354-like P[8] (P[8]b subtype) human rotaviruses A species isolated in Japan. J Med Virol 84:697-704.
14. Larralde G, Li BG, Kapikian AZ, Gorziglia M. 1991. Serotypespecific epitope(s) present on the VP8 subunit of rotavirus VP4 protein. J Virol 65:3213-3218.
15. Maes P, Matthijnssens J, Rahman M, Van Ranst M. 2009. RotaC: A web-based tool for the complete genome classification of group A rotaviruses. BMC Microbiol 9:238.
16. Matthijnssens J, Van Ranst M. 2012. Genotype constellation and evolution of group A rotaviruses infecting humans. Curr Opin Virol 2:426-433.
17. Matthijnssens J, Rahman M, Martella V, Xuelei Y, De Vos S, De Leener K, Ciarlet M, Buonavoglia C, Van Ranst M. 2006a. Full genomic analysis of human rotavirus strain B4106 and lapine rotavirus strain 30/96 provides evidence for interspecies transmission. J Virol 80:3801-3810.
18. Matthijnssens J, Rahman M, Yang X, Delbeke T, Arijs I, Kabue JP, Muyembe JJ, Van Ranst M. 2006b. G8 rotavirus strains isolated in the Democratic Republic of Congo belong to the DS-1-like genogroup. J Clin Microbiol 44:1801-1809.
19. Matthijnssens J, Ciarlet M, Heiman E, Arijs I, Delbeke T, McDonald SM, Palombo EA, Iturriza-Gómara M, Maes P, Patton JT, Rahman M, Ranst MV. 2008. Full genome-based classification of rotaviruses reveals a common origin between human Wa-like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol 82:3204-3219.
20. Matthijnssens J, Martella V, Van Ranst M. 2010. Priority paper evaluation: Genomic evolution, host-species barrier, reassortment and classification of rotaviruses. Future Virol 5:385-390.
21. Matthijnssens J, Ciarlet M, McDonald SM, Attoui H, Bányai K, Brister JR, Buesa J, Esona MD, Estes MK, Gentsch JR, Iturriza-Gómara M, Johne R, Kirkwood CD, Martella V, Mertens PP, Nakagomi O, Parreño V, Rahman M, Ruggeri FM, Saif LJ, Santos N, Steyer A, Taniguchi K, Patton JT, Desselberger U, Van Ranst M. 2011. Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG). Arch Virol 156:1397-1413.
22. Maunula L, von Bonsdorff CH. 2002. Frequent reassortments may explain the genetic heterogeneity of rotaviruses: Analysis of Finnish rotavirus strains. J Virol 76:11793-11800.
23. Medici MC, Abelli LA, Martella V, Martinelli M, Lorusso E, Buonavoglia C, Dettori G, Chezzi C. 2007. Characterization of inter-genogroup reassortant rotavirus strains detected in hospitalized children in Italy. J Med Virol 79:1406-1412.
24. Nakagomi O, Nakagomi T, Akatani K, Ikegami N. 1989. Identification of rotavirus genogroups by RNA-RNA hybridization. Mol Cell Probes 3:251-261.
25. Paul SK, Kobayashi N, Nagashima S, Ishino M, Watanabe S, Alam MM, Ahmed MU, Hossain MA, Naik TN. 2008. Phylogenetic analysis of rotaviruses with genotypes G1, G2, G9 and G12 in Bangladesh: Evidence for a close relationship between rotaviruses from children and adults. Arch Virol 153:1999-2012.
26. Phan TG, Khamrin P, Quang TD, Dey SK, Takanashi S, Okitsu S, Maneekarn N, Ushijima H. 2007. Detection and genetic characterization of group A rotavirus strains circulating among children with acute gastroenteritis in Japan. J Virol 81:4645-4653.
27. Rahman M, Matthijnssens J, Yang X, Delbeke T, Arijs I, Taniguchi K, Iturriza-Gómara M, Iftekharuddin N, Azim T, Van Ranst M. 2007. Evolutionary history and global spread of the emerging G12 human rotaviruses. J Virol 81:2382-2390.
28. Ramachandran M, Kirkwood CD, Unicomb L, Cunliffe NA, Ward RL, Bhan MK, Clark HF, Glass RI, Gentsch JR. 2000. Molecular characterization of serotype G9 rotavirus strains from a global collection. Virology 278:436-444.
29. Ramig RF, Ciarlet M, Mertens PPC, Dermody TS. 2005. Rotavirus. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA, editors. Virus taxonomy: Eight report of the international committee on taxonomy of viruses. Amsterdam/Holland: Elsevier/Academic Press. pp 484-496.
30. Santos N, Hoshino Y. 2005. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15:29-56.
31. Tate JE, Burton AH, Boschi-Pinto C, Steele AD, Duque J, Parashar UD. WHO-coordinated global rotavirus surveillance network. 2012. 2008 estimate of worldwide rotavirus-associated mortality in children younger than 5 years before the introduction of universal rotavirus vaccination programmes: A systematic review and meta-analysis. Lancet Infect Dis 12:136-141.
32. Tatte VS, Chitambar SD. 2012. Evidence of discordant genetic linkage in the VP4, VP6, VP7 and NSP4 encoding genes of rotavirus strains from adolescent and adult patients with acute gastroenteritis. Infect Genet Evol 12:1630-1634.
33. Trojnar E, Sachsenröder J, Twardziok S, Reetz J, Otto PH, Johne R. 2013. Identification of an avian group A rotavirus containing a novel VP4 gene with a close relationship to those of mammalian rotaviruses. J Gen Virol 94:136-142.
34. Ward RL, Knowlton DR. 1989. Genotypic selection following coinfection of cultured cells with subgroup 1 and subgroup 2 human rotaviruses. J Gen Virol 70:1691-1699.
35. Ward RL, Nakagomi O, Knowlton DR, McNeal MM, Nakagomi T, Clemens JD, Sack DA, Schiff GM. 1990. Evidence for natural reassortants of human rotaviruses belonging to different genogroups. J Virol 64:3219-3225.
36. Wu H, Taniguchi K, Wakasugi F, Ukae S, Chiba S, Ohseto M, Hasegawa A, Urasawa T, Urasawa S. 1994. Survey on the distribution of the gene 4 alleles of human rotaviruses by polymerase chain reaction. Epidemiol Infect 112:615-622.
37. Yoshinaga M, Phan TG, Nguyen TA, Yan H, Yagyu F, Okitsu S, Müller WE, Ushijima H. 2006. Changing distribution of group A rotavirus G-types and genetic analysis of G9 circulating in Japan. Arch Virol 151:183-192.