메뉴 건너뛰기




Volumn 12, Issue 4, 2014, Pages 269-280

Method validation for preparing serum and plasma samples from human blood for downstream proteomic, metabolomic, and circulating nucleic acid-based applications

Author keywords

[No Author keywords available]

Indexed keywords

DNA; HEMOGLOBIN; NUCLEIC ACID;

EID: 84912034168     PISSN: 19475535     EISSN: 19475543     Source Type: Journal    
DOI: 10.1089/bio.2014.0003     Document Type: Article
Times cited : (40)

References (41)
  • 1
    • 84912007160 scopus 로고    scopus 로고
    • CAP takes the reins on biorepository accreditation
    • October. Reference resources and publications/CAP Today/2012 Articles. Last accessed 28 June 2014
    • Bowers J. CAP takes the reins on biorepository accreditation. CAP Today Coll Am Pathol October 2012. http://www.cap.org/apps/cap.portal. Reference resources and publications/CAP Today/2012 Articles. Last accessed 28 June 2014.
    • (2012) CAP Today Coll Am Pathol
    • Bowers, J.1
  • 3
    • 56949086651 scopus 로고    scopus 로고
    • Proteomics: New technologies and clinical applications
    • Latterich M, Abramovitz M, Leyland-Jones B. Proteomics: New technologies and clinical applications. Eur J Cancer 2008;44:2737-2741.
    • (2008) Eur J Cancer , vol.44 , pp. 2737-2741
    • Latterich, M.1    Abramovitz, M.2    Leyland-Jones, B.3
  • 6
    • 84995380920 scopus 로고    scopus 로고
    • Best practices for repositories: Collection, storage, retrieval and distribution of biological materials for research. ISBER
    • Third Edition
    • Best Practices for Repositories: Collection, Storage, Retrieval and Distribution of Biological Materials for Research. ISBER. Third Edition. Biopreserv Biobank 2012;10:79-161.
    • (2012) Biopreserv Biobank , vol.10 , pp. 79-161
  • 7
    • 0005687384 scopus 로고    scopus 로고
    • Accessed November
    • Canadian Tumor Repository Network. Standard Operating Procedures. https://www.ctrnet.ca/operating-procedures. Accessed November 2013.
    • (2013) Standard Operating Procedures
  • 8
    • 74349125570 scopus 로고    scopus 로고
    • Preanalytical guidelines for clinical proteomics investigation of biological fluids
    • in French
    • Lehmann S, Roche S, Allory Y, et al. [Preanalytical guidelines for clinical proteomics investigation of biological fluids] in French. Ann Biol Clin (Paris) 2009;67:629-639.
    • (2009) Ann Biol Clin (Paris) , vol.67 , pp. 629-639
    • Lehmann, S.1    Roche, S.2    Allory, Y.3
  • 9
    • 77955866783 scopus 로고    scopus 로고
    • Molecular medicine Ireland guidelines for standardized biobanking
    • Guerin J, Murray D, McGrath M, et al. Molecular medicine Ireland guidelines for standardized biobanking. Biopreserv Biobank 2010;8:3-63.
    • (2010) Biopreserv Biobank , vol.8 , pp. 3-63
    • Guerin, J.1    Murray, D.2    McGrath, M.3
  • 10
    • 84859618435 scopus 로고    scopus 로고
    • Quantitative proteome profiling of normal human circulating microparticles
    • Østergaard O, Nielsen CT, Iversen LV, et al. Quantitative proteome profiling of normal human circulating microparticles. J Proteome Res 2012;11:2154-2163.
    • (2012) J Proteome Res , vol.11 , pp. 2154-2163
    • Østergaard, O.1    Nielsen, C.T.2    Iversen, L.V.3
  • 11
    • 70350449455 scopus 로고    scopus 로고
    • ExoCarta: A compendium of exosomal proteins and RNA
    • Mathivanan S, Simpson RJ. ExoCarta: A compendium of exosomal proteins and RNA. Proteomics 2009;9:4997-5000.
    • (2009) Proteomics , vol.9 , pp. 4997-5000
    • Mathivanan, S.1    Simpson, R.J.2
  • 12
    • 46849121990 scopus 로고    scopus 로고
    • Plasma-derived microparticles for biomarker discovery
    • Smalley DM, Ley K. Plasma-derived microparticles for biomarker discovery. Clin Lab 2008;54:67-79.
    • (2008) Clin Lab , vol.54 , pp. 67-79
    • Smalley, D.M.1    Ley, K.2
  • 13
    • 44949158707 scopus 로고    scopus 로고
    • Haemolysis: An overview of the leading cause of unsuitable specimens in clinical laboratories
    • Lippi G, Blanckaert N, Bonini P, et al. Haemolysis: An overview of the leading cause of unsuitable specimens in clinical laboratories. Clin Chem Lab Med 2008;46: 764-772.
    • (2008) Clin Chem Lab Med , vol.46 , pp. 764-772
    • Lippi, G.1    Blanckaert, N.2    Bonini, P.3
  • 14
    • 84876950001 scopus 로고    scopus 로고
    • Preanalytical aspects and sample quality assessment in metabolomics studies of human blood
    • Yin P, Peter A, Franken H, et al. Preanalytical aspects and sample quality assessment in metabolomics studies of human blood. Clin Chem 2013;59:833-845.
    • (2013) Clin Chem , vol.59 , pp. 833-845
    • Yin, P.1    Peter, A.2    Franken, H.3
  • 15
    • 34147209189 scopus 로고    scopus 로고
    • Preanalytic influence of sample handling on SELDI-TOF serum protein profiles
    • Timms JF, Arslan-Low E, Gentry-Maharaj A, et al. Preanalytic influence of sample handling on SELDI-TOF serum protein profiles. Clin Chem 2007;53:645-656.
    • (2007) Clin Chem , vol.53 , pp. 645-656
    • Timms, J.F.1    Arslan-Low, E.2    Gentry-Maharaj, A.3
  • 16
    • 33744473319 scopus 로고    scopus 로고
    • Systematical evaluation of the effects of sample collection procedures on low-molecular-weight serum/plasma proteome profiling
    • Hsieh S-Y, Chen R-K, Pan Y-H, et al. Systematical evaluation of the effects of sample collection procedures on low-molecular-weight serum/plasma proteome profiling. Proteomics 2006;6:3189-3198.
    • (2006) Proteomics , vol.6 , pp. 3189-3198
    • Hsieh, S.-Y.1    Chen, R.-K.2    Pan, Y.-H.3
  • 17
    • 84880610837 scopus 로고    scopus 로고
    • Optimizing blood collection, transport and storage conditions for cell free DNA increases access to prenatal testing
    • Wong D, Moturi S, Angkachatchai V, et al. Optimizing blood collection, transport and storage conditions for cell free DNA increases access to prenatal testing. Clin Biochem 2013;46:1099-1104.
    • (2013) Clin Biochem , vol.46 , pp. 1099-1104
    • Wong, D.1    Moturi, S.2    Angkachatchai, V.3
  • 18
    • 84880097843 scopus 로고    scopus 로고
    • Circulating nucleic acids in plasma and serum (CNAPS): Applications in oncology
    • González-Masiá JA, García-Olmo D, García-Olmo DC. Circulating nucleic acids in plasma and serum (CNAPS): Applications in oncology. OncoTargets Ther 2013;6:819-832.
    • (2013) OncoTargets Ther , vol.6 , pp. 819-832
    • González-Masiá, J.A.1    García-Olmo, D.2    García-Olmo, D.C.3
  • 19
    • 66149088821 scopus 로고    scopus 로고
    • Metabolite Detector: Comprehensive analysis tool for targeted and nontargeted GC/MS based metabolome analysis
    • Hiller K, Hangebrauk J, Jäger C, et al. Metabolite Detector: Comprehensive analysis tool for targeted and nontargeted GC/MS based metabolome analysis. Anal Chem 2009;81:3429-3439.
    • (2009) Anal Chem , vol.81 , pp. 3429-3439
    • Hiller, K.1    Hangebrauk, J.2    Jäger, C.3
  • 20
    • 84872387673 scopus 로고    scopus 로고
    • Easy Prot-An easy-to-use graphical platform for proteomics data analysis
    • Gluck F, Hoogland C, Antinori P, et al. Easy Prot-An easy-to-use graphical platform for proteomics data analysis. J Proteomics 2013;79:146-160.
    • (2013) J Proteomics , vol.79 , pp. 146-160
    • Gluck, F.1    Hoogland, C.2    Antinori, P.3
  • 21
    • 74849138649 scopus 로고    scopus 로고
    • Combining low- and high-energy tandem mass spectra for optimized peptide quantification with isobaric tags
    • Dayon L, Pasquarello C, Hoogland C, et al. Combining low- and high-energy tandem mass spectra for optimized peptide quantification with isobaric tags. J Proteomics 2010; 73:769-777.
    • (2010) J Proteomics , vol.73 , pp. 769-777
    • Dayon, L.1    Pasquarello, C.2    Hoogland, C.3
  • 22
    • 33847630405 scopus 로고    scopus 로고
    • Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
    • Elias JE, Gygi SP. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat Methods 2007;4:207-214.
    • (2007) Nat Methods , vol.4 , pp. 207-214
    • Elias, J.E.1    Gygi, S.P.2
  • 23
    • 79960955512 scopus 로고    scopus 로고
    • Detection of circulating microparticles by flow cytometry: Influence of centrifugation, filtration of buffer, and freezing
    • Dey-Hazra E, Hertel B, Kirsch T, et al. Detection of circulating microparticles by flow cytometry: Influence of centrifugation, filtration of buffer, and freezing. Vasc Health Risk Manag 2010;6:1125-1133.
    • (2010) Vasc Health Risk Manag , vol.6 , pp. 1125-1133
    • Dey-Hazra, E.1    Hertel, B.2    Kirsch, T.3
  • 24
    • 77955478150 scopus 로고    scopus 로고
    • Real-time PCR quantification of plasma DNA in non-small cell lung cancer patients and healthy controls
    • Szpechcinski A, Dancewicz M, Kopinski P, et al. Real-time PCR quantification of plasma DNA in non-small cell lung cancer patients and healthy controls. Eur J Med Res 2009; 14 Suppl 4:237-240.
    • (2009) Eur J Med Res , vol.14 , pp. 237-240
    • Szpechcinski, A.1    Dancewicz, M.2    Kopinski, P.3
  • 25
    • 84893955277 scopus 로고    scopus 로고
    • Haemolysis as influence and interference factor
    • Last accessed 28 June
    • Thomas L. Haemolysis as influence and interference factor. eJIFCC vol 13(4). http://www.ifcc.org/ifccfiles/docs/130401002end.pdf. Last accessed 28 June 2014.
    • (2014) EJIFCC , vol.13 , Issue.4
    • Thomas, L.1
  • 26
    • 79958198057 scopus 로고    scopus 로고
    • General statistical modeling of data from protein relative expression isobaric tags
    • Breitwieser FP, Müller A, Dayon L, et al. General statistical modeling of data from protein relative expression isobaric tags. J Proteome Res 2011;10:2758-2766.
    • (2011) J Proteome Res , vol.10 , pp. 2758-2766
    • Breitwieser, F.P.1    Müller, A.2    Dayon, L.3
  • 27
    • 0036144099 scopus 로고    scopus 로고
    • Red blood cell hemolysis during processing
    • Sowemimo-Coker SO. Red blood cell hemolysis during processing. Transfus Med Rev 2002;16:46-60.
    • (2002) Transfus Med Rev , vol.16 , pp. 46-60
    • Sowemimo-Coker, S.O.1
  • 28
    • 84857560160 scopus 로고    scopus 로고
    • Impact of preanalytical parameters on the measurement of circulating microparticles: Towards standardization of protocol
    • Lacroix R, Judicone C, Poncelet P, et al. Impact of preanalytical parameters on the measurement of circulating microparticles: Towards standardization of protocol. J Thromb Haemost 2012;10:437-446.
    • (2012) J Thromb Haemost , vol.10 , pp. 437-446
    • Lacroix, R.1    Judicone, C.2    Poncelet, P.3
  • 29
    • 84855263249 scopus 로고    scopus 로고
    • Influence of common preanalytical variations on the metabolic profile of serum samples in biobanks
    • Fliniaux O, Gaillard G, Lion A, et al. Influence of common preanalytical variations on the metabolic profile of serum samples in biobanks. J Biomol NMR 2011;51:457-465.
    • (2011) J Biomol NMR , vol.51 , pp. 457-465
    • Fliniaux, O.1    Gaillard, G.2    Lion, A.3
  • 30
    • 53849106127 scopus 로고    scopus 로고
    • Microparticles in stored red blood cells: An approach using flow cytometry and proteomic tools
    • Rubin O, Crettaz D, Canellini G, et al. Microparticles in stored red blood cells: An approach using flow cytometry and proteomic tools. Vox Sang 2008;95:288-297.
    • (2008) Vox Sang , vol.95 , pp. 288-297
    • Rubin, O.1    Crettaz, D.2    Canellini, G.3
  • 31
    • 84873407266 scopus 로고    scopus 로고
    • Microparticle counts in platelet-rich and platelet-free plasma, effect of centrifugation and sampleprocessing protocols
    • Chandler WL. Microparticle counts in platelet-rich and platelet-free plasma, effect of centrifugation and sampleprocessing protocols. Blood Coagul Fibrinolysis 2013;24: 125-132.
    • (2013) Blood Coagul Fibrinolysis , vol.24 , pp. 125-132
    • Chandler, W.L.1
  • 32
    • 84878757129 scopus 로고    scopus 로고
    • Plasma processing conditions substantially influence circulating microRNA biomarker levels
    • Cheng HH, Yi HS, Kim Y, et al. Plasma processing conditions substantially influence circulating microRNA biomarker levels. PloS One 2013;8:e64795.
    • (2013) PloS One , vol.8 , pp. e64795
    • Cheng, H.H.1    Yi, H.S.2    Kim, Y.3
  • 33
    • 33747202452 scopus 로고    scopus 로고
    • Effects of preanalytical variables on peptide and protein measurements in human serum and plasma: Implications for clinical proteomics
    • Rai AJ, Vitzthum F. Effects of preanalytical variables on peptide and protein measurements in human serum and plasma: Implications for clinical proteomics. Expert Rev Proteomics 2006;3:409-426.
    • (2006) Expert Rev Proteomics , vol.3 , pp. 409-426
    • Rai, A.J.1    Vitzthum, F.2
  • 34
    • 28044444292 scopus 로고    scopus 로고
    • Preanalytical impact of sample handling on proteome profiling experiments withmatrix-assisted laser desorption/ionization time-of-flight mass spectrometry
    • Findeisen P, Sismanidis D, Riedl M, et al. Preanalytical impact of sample handling on proteome profiling experiments withmatrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Clin Chem 2005;51:2409-2411.
    • (2005) Clin Chem , vol.51 , pp. 2409-2411
    • Findeisen, P.1    Sismanidis, D.2    Riedl, M.3
  • 35
    • 72149102127 scopus 로고    scopus 로고
    • Preanalytical operating procedures for serum low molecular weight protein profiling
    • Di Girolamo F, Alessandroni J, Somma P, et al. Preanalytical operating procedures for serum low molecular weight protein profiling. J Proteomics 2010;73:667-677.
    • (2010) J Proteomics , vol.73 , pp. 667-677
    • Di Girolamo, F.1    Alessandroni, J.2    Somma, P.3
  • 36
    • 0015434551 scopus 로고
    • The effect of cold on platelets. II. Platelet function after short-term storage at cold temperatures
    • Kattlove HE, Alexander B, White F. The effect of cold on platelets. II. Platelet function after short-term storage at cold temperatures. Blood 1972;40:688-696.
    • (1972) Blood , vol.40 , pp. 688-696
    • Kattlove, H.E.1    Alexander, B.2    White, F.3
  • 37
    • 61349174658 scopus 로고    scopus 로고
    • Intrinsic peptidase activity causes a sequential multi-step reaction (SMSR) in digestion of human plasma peptides
    • Yi J, Liu Z, Craft D, et al. Intrinsic peptidase activity causes a sequential multi-step reaction (SMSR) in digestion of human plasma peptides. J Proteome Res 2008;7:5112-5118.
    • (2008) J Proteome Res , vol.7 , pp. 5112-5118
    • Yi, J.1    Liu, Z.2    Craft, D.3
  • 38
    • 84893490530 scopus 로고    scopus 로고
    • Quality markers addressing preanalytical variations of blood and plasma processing identified by broad and targeted metabolite profiling
    • Kam Lage B, Maldonado SG, Bethan B, et al. Quality markers addressing preanalytical variations of blood and plasma processing identified by broad and targeted metabolite profiling. Clin Chem 2014;60:399-412.
    • (2014) Clin Chem , vol.60 , pp. 399-412
    • Kam Lage, B.1    Maldonado, S.G.2    Bethan, B.3
  • 39
    • 80053143997 scopus 로고    scopus 로고
    • State of the art in preservation of fluid biospecimens
    • Hubel A, Alptekin A, Skubitz A, et al. State of the art in preservation of fluid biospecimens. Biopreserv Biobank 2011; 9:237-244.
    • (2011) Biopreserv Biobank , vol.9 , pp. 237-244
    • Hubel, A.1    Alptekin, A.2    Skubitz, A.3
  • 40
    • 84865461436 scopus 로고    scopus 로고
    • Standard preanalytical coding for biospecimens: Review and implementation of the Sample PREanalytical Code (SPREC)
    • Lehmann R, F. Guadagni, H. Moore, et al. Standard preanalytical coding for biospecimens: Review and implementation of the Sample PREanalytical Code (SPREC). Biopreserv Biobank 2012;10:366-374.
    • (2012) Biopreserv Biobank , vol.10 , pp. 366-374
    • Lehmann, R.1    Guadagni, F.2    Moore, H.3
  • 41
    • 77950826958 scopus 로고    scopus 로고
    • Standard preanalytical coding for biospecimens: Defining the sample PREanalytical code
    • Betsou F, Lehmann S, Ashton G, et al. Standard preanalytical coding for biospecimens: Defining the sample PREanalytical code. Cancer Epidemiol Biomark Prev 2010;19:1004-1011.
    • (2010) Cancer Epidemiol Biomark Prev , vol.19 , pp. 1004-1011
    • Betsou, F.1    Lehmann, S.2    Ashton, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.