Preanalytical impact of sample handling on proteome profiling experiments with matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

Clinical Chemistry

Volumn 51, Issue 12, 2005, Pages 2409-2411

  Findeisen, Peter ^a,b   Sismanidis, Diamandula ^a   Riedl, Martin ^a   Costina, Victor ^a   Neumaier, Michael ^a  

^a UNIVERSITY OF HEIDELBERG   (Germany)

^b MEDICAL FACULTY MANNHEIM HEIDELBERG UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BLOOD CLOTTING; BLOOD STORAGE; HUMAN; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; PLASMA; PROTEOMICS; QUALITY CONTROL; REPRODUCIBILITY; SAMPLING;

HUMANS; PROTEOME; PROTEOMICS; SPECIMEN HANDLING; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TIME FACTORS;

EID: 28044444292     PISSN: 00099147     EISSN: None     Source Type: Journal    
DOI: 10.1373/clinchem.2005.054585     Document Type: Article

References (15)

1. Rosenblatt KP, Bryant-Greenwood P, Klllian JK, Mehta A, Geho D, Espina V, et al. Serum proteomics in cancer diagnosis and management. Annu Rev Med 2004;55:97-112.
2. Ransohoff DF. Lessons from controversy: ovarian cancer screening and serum proteomics. J Natl Cancer Inst 2005;97:315-9.
3. Baggerly KA, Morris JS, Coombes KR. Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments. Bioinformatics 2004;20:777-85.
4. Baumann S, Ceglarek U, Fiedler GM, Lembcke J, Leichtle A, Thiery J. Standardized approach to proteome profiling of human serum based on magnetic bead separation and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Clin Chem 2005;51:973-80.
5. Thavasu PW, Longhurst S, Joel SP, Slevin ML, Balkwill FR. Measuring cytokine levels in blood. Importance of anticoagulants, processing, and storage conditions. J Immunol Methods 1992;153:115-24.
6. Karsan A, Eigl BJ, Flibotte S, Gelmon K, Switzer P, Hassell P, et al. Analytical and preanalytical biases in serum proteomic pattern analysis for breast cancer diagnosis. Clin Chem 2005;51:1525-8.
7. Schuerenberg M, Luebbert C, Eickhoff H, Katkum M, Lehrach H, Nordhoff E. Prestructured MALDI-MS sample supports. Anal Chem 2000;72:3436-42.
8. Chan YH. Biostatistics 104: correlational analysis. Singapore Med J 2003;44:614-9.
9. Baggerly KA, Morris JS, Edmonson SR, Coombes KR. Signal in noise: evaluating reported reproducibility of serum proteomic tests for ovarian cancer. J Natl Cancer Inst 2005;97:307-9.
10. Fischer JE, Janousek M, Fischer M, Seifarth FG, Blau N, Fanconi S. Effect of collection and preprocessing methods on neutrophil elastase plasma concentrations. Clin Biochem 1998;31:131-6.
11. Borregaard N, Cowland JB. Granules of the human neutrophilic polymorphonuclear leukocyte. Blood 1997;89:3503-21.
12. Evans MJ, Livesey JH, Ellis MJ, Yandle TG. Effect of anticoagulants and storage temperatures on stability of plasma and serum hormones. Clin Biochem 2001;34:107-12.
13. Brummel KE, Butenas S, Mann KG. An integrated study of fibrinogen during blood coagulation. J Biol Chem 1999;274:22862-70.
14. Gay S, Binz PA, Hochstrasser DF, Appel RD. Peptide mass fingerprinting peak intensity prediction: extracting knowledge from spectra. Proteomics 2002;2:1374-91.
15. Krause E, Wenschuh H, Jungblut PR. The dominance of arginine-containing peptides in MALDI-derived tryptic mass fingerprints of proteins. Anal Chem 1999;71:4160-5.