-
1
-
-
79952638264
-
Cellular decision making and biological noise: From microbes to mammals
-
G. Baĺazsi, A. van Oudenaarden, and J. J. Collins, "Cellular decision making and biological noise: from microbes to mammals, " Cell, vol. 144, no. 6, pp. 910-925, 2011.
-
(2011)
Cell
, vol.144
, Issue.6
, pp. 910-925
-
-
Baĺazsi, G.1
Oudenaarden, A.V.2
Collins, J.J.3
-
2
-
-
0842285841
-
Summing up the noise in gene networks
-
J. Paulsson, "Summing up the noise in gene networks, " Nature, vol. 427, no. 6973, pp. 415-418, 2004.
-
(2004)
Nature
, vol.427
, Issue.6973
, pp. 415-418
-
-
Paulsson, J.1
-
3
-
-
73149105740
-
Listening to the noise: Random fluctuations reveal gene network parameters
-
B. Munsky, B. Trinh, and M. Khammash, "Listening to the noise: random fluctuations reveal gene network parameters, " Molecular systems biology, vol. 5, no. 1, 2009.
-
(2009)
Molecular Systems Biology
, vol.5
, Issue.1
-
-
Munsky, B.1
Trinh, B.2
Khammash, M.3
-
4
-
-
44049109914
-
A rigorous derivation of the chemical master equation
-
D. T. Gillespie, "A rigorous derivation of the chemical master equation, " Physica A: Statistical Mechanics and its Applications, vol. 188, no. 1, pp. 404-425, 1992.
-
(1992)
Physica A: Statistical Mechanics and its Applications
, vol.188
, Issue.1
, pp. 404-425
-
-
Gillespie, D.T.1
-
5
-
-
41549140160
-
Bayesian inference for a discretely observed stochastic kinetic model
-
R. J. Boys, D. J. Wilkinson, and T. B. Kirkwood, "Bayesian inference for a discretely observed stochastic kinetic model, " Statistics and Computing, vol. 18, no. 2, pp. 125-135, 2008.
-
(2008)
Statistics and Computing
, vol.18
, Issue.2
, pp. 125-135
-
-
Boys, R.J.1
Wilkinson, D.J.2
Kirkwood, T.B.3
-
6
-
-
58149142997
-
Approximate bayesian computation scheme for parameter inference and model selection in dynamical systems
-
T. Toni, D. Welch, N. Strelkowa, A. Ipsen, and M. P. Stumpf, "Approximate bayesian computation scheme for parameter inference and model selection in dynamical systems, " Journal of the Royal Society Interface, vol. 6, no. 31, pp. 187-202, 2009.
-
(2009)
Journal of the Royal Society Interface
, vol.6
, Issue.31
, pp. 187-202
-
-
Toni, T.1
Welch, D.2
Strelkowa, N.3
Ipsen, A.4
Stumpf, M.P.5
-
7
-
-
33746582040
-
Parameter estimation in stochastic biochemical reactions
-
S. Reinker, R. Altman, and J. Timmer, "Parameter estimation in stochastic biochemical reactions, " IEE Proceedings-Systems Biology, vol. 153, no. 4, pp. 168-178, 2006.
-
(2006)
IEE Proceedings-Systems Biology
, vol.153
, Issue.4
, pp. 168-178
-
-
Reinker, S.1
Altman, R.2
Timmer, J.3
-
9
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
D. T. Gillespie, "Exact stochastic simulation of coupled chemical reactions, " The journal of physical chemistry, vol. 81, no. 25, 1977.
-
(1977)
The Journal of Physical Chemistry
, vol.81
, Issue.25
-
-
Gillespie, D.T.1
-
10
-
-
77955187053
-
Global parameter estimation methods for stochastic biochemical systems
-
S. K. Poovathingal and R. Gunawan, "Global parameter estimation methods for stochastic biochemical systems, " BMC Bioinformatics, vol. 11, no. 1, p. 414, 2010.
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.1
-
-
Poovathingal, S.K.1
Gunawan, R.2
-
11
-
-
33751347484
-
The finite state projection algorithm for the solution of the chemical master equation
-
B. Munsky and M. Khammash, "The finite state projection algorithm for the solution of the chemical master equation, " The Journal of chemical physics, vol. 124, 2006.
-
(2006)
The Journal of Chemical Physics
, vol.124
-
-
Munsky, B.1
Khammash, M.2
-
12
-
-
78149453584
-
Identification from stochastic cell-to-cell variation: A genetic switch case study
-
B. Munsky and M. Khammash, "Identification from stochastic cell-to-cell variation: A genetic switch case study, " IET systems biology, vol. 4, no. 6, 2010.
-
(2010)
IET Systems Biology
, vol.4
, Issue.6
-
-
Munsky, B.1
Khammash, M.2
-
13
-
-
84893288693
-
Efficient parameter identification for stochastic biochemical networks using a reduced-order realization
-
Y. Hori, M. Khammash, and S. Hara, "Efficient parameter identification for stochastic biochemical networks using a reduced-order realization, " in Proc. of the European Control Conference, 2013.
-
(2013)
Proc. of the European Control Conference
-
-
Hori, Y.1
Khammash, M.2
Hara, S.3
-
15
-
-
84861443923
-
Moment-based inference predicts bimodality in transient gene expression
-
C. Zechner, J. Ruess, P. Krenn, S. Pelet, M. Peter, J. Lygeros, and H. Koeppl, "Moment-based inference predicts bimodality in transient gene expression, " Proceedings of the National Academy of Sciences, vol. 109, no. 21, pp. 8340-8345, 2012.
-
(2012)
Proceedings of the National Academy of Sciences
, vol.109
, Issue.21
, pp. 8340-8345
-
-
Zechner, C.1
Ruess, J.2
Krenn, P.3
Pelet, S.4
Peter, M.5
Lygeros, J.6
Koeppl, H.7
-
16
-
-
84902313444
-
Identifying stochastic biochemical networks from single-cell population experiments: A comparison of approaches based on the fisher information
-
J. Ruess and J. Lygeros, "Identifying stochastic biochemical networks from single-cell population experiments: A comparison of approaches based on the fisher information, " in Proceedings of the 52nd Conference on Decision and Control, 2013.
-
(2013)
Proceedings of the 52nd Conference on Decision and Control
-
-
Ruess, J.1
Lygeros, J.2
-
17
-
-
84893293657
-
Identification of biological models from single cell data: A comparison between mixed-effects and moment-based inference
-
A. Gonzalez, J. Uhlendorf, J. Schaul, E. Cinquemani, G. Batt, and G. Ferrari-Trecate, "Identification of biological models from single cell data: A comparison between mixed-effects and moment-based inference, " in Proceedings of the European Control Conference, 2013.
-
(2013)
Proceedings of the European Control Conference
-
-
Gonzalez, A.1
Uhlendorf, J.2
Schaul, J.3
Cinquemani, E.4
Batt, G.5
Ferrari-Trecate, G.6
-
18
-
-
83255165732
-
In silico feedback for in vivo regulation of a gene expression circuit
-
A. Milias-Argeitis, S. Summers, J. Stewart-Ornstein, I. Zuleta, D. Pincus, H. El-Samad, M. Khammash, and J. Lygeros, "In silico feedback for in vivo regulation of a gene expression circuit, " Nature Biotechnology, vol. 29, no. 12, pp. 1114-1116, 2011.
-
(2011)
Nature Biotechnology
, vol.29
, Issue.12
, pp. 1114-1116
-
-
Milias-Argeitis, A.1
Summers, S.2
Stewart-Ornstein, J.3
Zuleta, I.4
Pincus, D.5
El-Samad, H.6
Khammash, M.7
Lygeros, J.8
-
19
-
-
84865536748
-
Long-term model predictive control of gene expression at the population and single-cell levels
-
J. Uhlendorf, A. Miermont, T. Delaveau, G. Charvin, F. Fages, S. Bottani, G. Batt, and P. Hersen, "Long-term model predictive control of gene expression at the population and single-cell levels, " Proceedings of the National Academy of Sciences, vol. 109, no. 35, pp. 14 271-14 276, 2012.
-
(2012)
Proceedings of the National Academy of Sciences
, vol.109
, Issue.35
, pp. 14271-14276
-
-
Uhlendorf, J.1
Miermont, A.2
Delaveau, T.3
Charvin, G.4
Fages, F.5
Bottani, S.6
Batt, G.7
Hersen, P.8
-
20
-
-
79956204640
-
Analysis, design and implementation of a novel scheme for in-vivo control of synthetic gene regulatory networks
-
F. Menolascina, M. Di Bernardo, and D. Di Bernardo, "Analysis, design and implementation of a novel scheme for in-vivo control of synthetic gene regulatory networks, " Automatica, vol. 47, no. 6, pp. 1265-1270, 2011.
-
(2011)
Automatica
, vol.47
, Issue.6
, pp. 1265-1270
-
-
Menolascina, F.1
Bernardo, M.D.2
Bernardo, D.D.3
-
23
-
-
84867057991
-
A null-space-based technique for the estimation of linear-time invariant structured state-space representations
-
O. Prot, G. Mercere, and J. Ramos, "A null-space-based technique for the estimation of linear-time invariant structured state-space representations, " in P. 16th IFAC Symposium on System Identification, 2012.
-
(2012)
P. 16th IFAC Symposium on System Identification
-
-
Prot, O.1
Mercere, G.2
Ramos, J.3
-
27
-
-
64549159754
-
A moment closure method for stochastic reaction networks
-
C. H. Lee, K.-H. Kim, and P. Kim, "A moment closure method for stochastic reaction networks, " The Journal of chemical physics, vol. 130, p. 134107, 2009.
-
(2009)
The Journal of Chemical Physics
, vol.130
-
-
Lee, C.H.1
Kim, K.-H.2
Kim, P.3
-
28
-
-
84896591356
-
Designing experiments to understand the variability in biochemical reaction networks
-
J. Ruess, A. Milias, and J. Lygeros, "Designing experiments to understand the variability in biochemical reaction networks, " Journal of the Royal Society Interface, vol. 10, no. 88, 2013.
-
(2013)
Journal of the Royal Society Interface
, vol.10
, Issue.88
-
-
Ruess, J.1
Milias, A.2
Lygeros, J.3
-
30
-
-
20344396845
-
Yalmip: A toolbox for modeling and optimization in matlab
-
J. Lofberg, "Yalmip: A toolbox for modeling and optimization in MATLAB, " in Proceedings of the CACSD Conference, 2004.
-
(2004)
Proceedings of the CACSD Conference
-
-
Lofberg, J.1
-
31
-
-
78649959469
-
Perspectives on system identification
-
L. Ljung, "Perspectives on system identification, " Annual Reviews in Control, vol. 34, no. 1, pp. 1-12, 2010.
-
(2010)
Annual Reviews in Control
, vol.34
, Issue.1
, pp. 1-12
-
-
Ljung, L.1
|