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Volumn 2014, Issue , 2014, Pages

A least square method based model for identifying protein complexes in protein-protein interaction network

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE H3; PROTEIN; MULTIPROTEIN COMPLEX;

EID: 84911215693     PISSN: 23146133     EISSN: 23146141     Source Type: Journal    
DOI: 10.1155/2014/720960     Document Type: Article
Times cited : (6)

References (33)
  • 1
    • 84896452294 scopus 로고    scopus 로고
    • Identifying protein complexes and functional modules - From static PPI networks to dynamic PPI networks
    • Chen B., Fan W., Liu J., Wu F. X., Identifying protein complexes and functional modules-from static PPI networks to dynamic PPI networks. Briefings in Bioinformatics 2014 15 2 177 179 10.1093/bib/bbt039
    • (2014) Briefings in Bioinformatics , vol.15 , Issue.2 , pp. 177-179
    • Chen, B.1    Fan, W.2    Liu, J.3    Wu, F.X.4
  • 5
    • 78649679994 scopus 로고    scopus 로고
    • Recent advances in clustering methods for protein interaction networks
    • 2-s2.0-78649679994
    • Wang J., Li M., Deng Y., Pan Y., Recent advances in clustering methods for protein interaction networks. BMC Genomics 2010 11 3, article S10 10.1186/1471-2164-11-S3-S10 2-s2.0-78649679994
    • (2010) BMC Genomics , vol.11 , Issue.3 ARTICLE S10
    • Wang, J.1    Li, M.2    Deng, Y.3    Pan, Y.4
  • 6
    • 76749150479 scopus 로고    scopus 로고
    • Computational approaches for detecting protein complexes from protein interaction networks: A survey
    • supplement 1, article S3 2-s2.0-76749150479
    • Li X., Wu M., Kwoh C.-K., Ng S.-K., Computational approaches for detecting protein complexes from protein interaction networks: A survey. BMC Genomics 2010 11 supplement 1, article S3 10.1186/1471-2164-11-S1-S3 2-s2.0-76749150479
    • (2010) BMC Genomics , vol.11
    • Li, X.1    Wu, M.2    Kwoh, C.-K.3    Ng, S.-K.4
  • 7
    • 33645761859 scopus 로고    scopus 로고
    • Fast and accurate method for identifying high-quality protein-interaction modules by clique merging and its application to yeast
    • 2-s2.0-33645761859
    • Zhang C., Liu S., Zhou Y., Fast and accurate method for identifying high-quality protein-interaction modules by clique merging and its application to yeast. Journal of Proteome Research 2006 5 4 801 807 10.1021/pr050366g 2-s2.0-33645761859
    • (2006) Journal of Proteome Research , vol.5 , Issue.4 , pp. 801-807
    • Zhang, C.1    Liu, S.2    Zhou, Y.3
  • 8
    • 78149344632 scopus 로고    scopus 로고
    • Identifying protein complexes from interaction networks based on clique percolation and distance restriction
    • 2-s2.0-78149344632
    • Wang J., Liu B., Li M., Pan Y., Identifying protein complexes from interaction networks based on clique percolation and distance restriction. BMC Genomics 2010 11 2, article S10 10.1186/1471-2164-11-S2-S10 2-s2.0-78149344632
    • (2010) BMC Genomics , vol.11 , Issue.2 ARTICLE S10
    • Wang, J.1    Liu, B.2    Li, M.3    Pan, Y.4
  • 9
    • 84872678695 scopus 로고    scopus 로고
    • Identifying protein complexes in protein-protein interaction networks by using clique seeds and graph entropy
    • 2-s2.0-84872678695
    • Chen B., Shi J., Zhang S., Wu F.-X., Identifying protein complexes in protein-protein interaction networks by using clique seeds and graph entropy. Proteomics 2013 13 2 269 277 10.1002/pmic.201200336 2-s2.0-84872678695
    • (2013) Proteomics , vol.13 , Issue.2 , pp. 269-277
    • Chen, B.1    Shi, J.2    Zhang, S.3    Wu, F.-X.4
  • 10
    • 33645830948 scopus 로고    scopus 로고
    • CFinder: Locating cliques and overlapping modules in biological networks
    • 2-s2.0-33645830948
    • Adamcsek B., Palla G., Farkas I. J., Derényi I., Vicsek T., CFinder: Locating cliques and overlapping modules in biological networks. Bioinformatics 2006 22 8 1021 1023 10.1093/bioinformatics/btl039 2-s2.0-33645830948
    • (2006) Bioinformatics , vol.22 , Issue.8 , pp. 1021-1023
    • Adamcsek, B.1    Palla, G.2    Farkas, I.J.3    Derényi, I.4    Vicsek, T.5
  • 11
    • 20444504323 scopus 로고    scopus 로고
    • Uncovering the overlapping community structure of complex networks in nature and society
    • 2-s2.0-20444504323
    • Palla G., Derényi I., Farkas I., Vicsek T., Uncovering the overlapping community structure of complex networks in nature and society. Nature 2005 435 7043 814 818 10.1038/nature03607 2-s2.0-20444504323
    • (2005) Nature , vol.435 , Issue.7043 , pp. 814-818
    • Palla, G.1    Derényi, I.2    Farkas, I.3    Vicsek, T.4
  • 12
    • 84855178662 scopus 로고    scopus 로고
    • Multifunctional proteins revealed by overlapping clustering in protein interaction network
    • btr621 2-s2.0-84855178662
    • Becker E., Robisson B., Chapple C. E., Guénoche A., Brun C., Multifunctional proteins revealed by overlapping clustering in protein interaction network. Bioinformatics 2012 28 1 84 90 btr621 10.1093/bioinformatics/btr621 2-s2.0-84855178662
    • (2012) Bioinformatics , vol.28 , Issue.1 , pp. 84-90
    • Becker, E.1    Robisson, B.2    Chapple, C.E.3    Guénoche, A.4    Brun, C.5
  • 13
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • 2-s2.0-0037566556
    • Bader G. D., Hogue C. W., An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 2003 4 1, article 2 10.1186/1471-2105-4-2 2-s2.0-0037566556
    • (2003) BMC Bioinformatics , vol.4 , Issue.1 ARTICLE 2
    • Bader, G.D.1    Hogue, C.W.2
  • 14
    • 84860361165 scopus 로고    scopus 로고
    • Detecting overlapping protein complexes in protein-protein interaction networks
    • 2-s2.0-84860361165
    • Nepusz T., Yu H., Paccanaro A., Detecting overlapping protein complexes in protein-protein interaction networks. Nature Methods 2012 9 5 471 472 10.1038/nmeth.1938 2-s2.0-84860361165
    • (2012) Nature Methods , vol.9 , Issue.5 , pp. 471-472
    • Nepusz, T.1    Yu, H.2    Paccanaro, A.3
  • 15
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • 2-s2.0-0036529479
    • Enright A. J., Van Dongen S., Ouzounis C. A., An efficient algorithm for large-scale detection of protein families. Nucleic Acids Research 2002 30 7 1575 1584 10.1093/nar/30.7.1575 2-s2.0-0036529479
    • (2002) Nucleic Acids Research , vol.30 , Issue.7 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 16
    • 84891348523 scopus 로고    scopus 로고
    • Functional module identification in protein interaction networks by interaction patterns
    • Wang Y. J., Qian X. N., Functional module identification in protein interaction networks by interaction patterns. Bioinformatics 2014 30 1 81 93 10.1093/bioinformatics/btt569
    • (2014) Bioinformatics , vol.30 , Issue.1 , pp. 81-93
    • Wang, Y.J.1    Qian, X.N.2
  • 17
    • 49649104565 scopus 로고    scopus 로고
    • A structural approach for finding functional modules from large biological networks
    • 2-s2.0-49649104565
    • Mete M., Tang F., Xu X., Yuruk N., A structural approach for finding functional modules from large biological networks. BMC Bioinformatics 2008 9 9, article S19 10.1186/1471-2105-9-S9-S19 2-s2.0-49649104565
    • (2008) BMC Bioinformatics , vol.9 , Issue.9 ARTICLE S19
    • Mete, M.1    Tang, F.2    Xu, X.3    Yuruk, N.4
  • 19
    • 79959532395 scopus 로고    scopus 로고
    • Graph regularized nonnegative matrix factorization for data representation
    • 2-s2.0-79959532395
    • Cai D., He X., Han J., Huang T. S., Graph regularized nonnegative matrix factorization for data representation. IEEE Transactions on Pattern Analysis and Machine Intelligence 2011 33 8 1548 1560 10.1109/TPAMI.2010.231 2-s2.0-79959532395
    • (2011) IEEE Transactions on Pattern Analysis and Machine Intelligence , vol.33 , Issue.8 , pp. 1548-1560
    • Cai, D.1    He, X.2    Han, J.3    Huang, T.S.4
  • 21
    • 84859170942 scopus 로고    scopus 로고
    • Protein complexes discovery based on protein-protein interaction data via a regularized sparse generative network model
    • 2-s2.0-84859170942
    • Zhang X.-F., Dai D.-Q., Li X.-X., Protein complexes discovery based on protein-protein interaction data via a regularized sparse generative network model. IEEE/ACM Transactions on Computational Biology and Bioinformatics 2012 9 3 857 870 10.1109/TCBB.2012.20 2-s2.0-84859170942
    • (2012) IEEE/ACM Transactions on Computational Biology and Bioinformatics , vol.9 , Issue.3 , pp. 857-870
    • Zhang, X.-F.1    Dai, D.-Q.2    Li, X.-X.3
  • 22
    • 41349117788 scopus 로고    scopus 로고
    • Finding community structure in very large networks
    • 066111 2-s2.0-41349117788
    • Clauset A., Newman M., Moore C., Finding community structure in very large networks. Physical Review E 2004 70 6 066111 10.1103/PhysRevE.70.066111 2-s2.0-41349117788
    • (2004) Physical Review e , vol.70 , Issue.6
    • Clauset, A.1    Newman, M.2    Moore, C.3
  • 26
    • 63349085550 scopus 로고    scopus 로고
    • Up-to-date catalogues of yeast protein complexes
    • 2-s2.0-63349085550
    • Pu S., Wong J., Turner B., Cho E., Wodak S. J., Up-to-date catalogues of yeast protein complexes. Nucleic Acids Research 2009 37 3 825 831 10.1093/nar/gkn1005 2-s2.0-63349085550
    • (2009) Nucleic Acids Research , vol.37 , Issue.3 , pp. 825-831
    • Pu, S.1    Wong, J.2    Turner, B.3    Cho, E.4    Wodak, S.J.5
  • 27
    • 12344269924 scopus 로고    scopus 로고
    • GO:: TermFinder - Open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
    • 2-s2.0-12344269924
    • Boyle E. I., Weng S., Gollub J., Jin H., Botstein D., Cherry J. M., Sherlock G., GO:: TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 2004 20 18 3710 3715 10.1093/bioinformatics/bth456 2-s2.0-12344269924
    • (2004) Bioinformatics , vol.20 , Issue.18 , pp. 3710-3715
    • Boyle, E.I.1    Weng, S.2    Gollub, J.3    Jin, H.4    Botstein, D.5    Cherry, J.M.6    Sherlock, G.7
  • 30
    • 84896760571 scopus 로고    scopus 로고
    • Dynamic protein interaction network construction and applications
    • Wang J., Peng X., Peng W., Wu F. X., Dynamic protein interaction network construction and applications. Proteomics 2014 14 4-5 338 352 10.1002/pmic.201300257
    • (2014) Proteomics , vol.14 , Issue.4-5 , pp. 338-352
    • Wang, J.1    Peng, X.2    Peng, W.3    Wu, F.X.4
  • 31
    • 84874240374 scopus 로고    scopus 로고
    • Hierarchical classification of protein folds using a novel ensemble classifier
    • e56499 2-s2.0-84874240374
    • Lin C., Zou Y., Qin J., Liu X., Jiang Y., Ke C., Zou Q., Hierarchical classification of protein folds using a novel ensemble classifier. PLoS ONE 2013 8 2 e56499 10.1371/journal.pone.0056499 2-s2.0-84874240374
    • (2013) PLoS ONE , vol.8 , Issue.2
    • Lin, C.1    Zou, Y.2    Qin, J.3    Liu, X.4    Jiang, Y.5    Ke, C.6    Zou, Q.7
  • 32
    • 84911123541 scopus 로고    scopus 로고
    • Structure-based protein-protein interaction networks and drug design
    • Naveed H., Han J. J., Structure-based protein-protein interaction networks and drug design. Quantitative Biology 2013 1 3 183 191
    • (2013) Quantitative Biology , vol.1 , Issue.3 , pp. 183-191
    • Naveed, H.1    Han, J.J.2
  • 33
    • 84879259855 scopus 로고    scopus 로고
    • Prediction and analysis of post-translational pyruvoyl residue modification sites from internal serines in proteins
    • e66678 2-s2.0-84879259855
    • Jiang Y., Li B. Q., Zhang Y., Feng Y. M., Gao Y. F., Zhang N., Cai Y. D., Prediction and analysis of post-translational pyruvoyl residue modification sites from internal serines in proteins. PLoS ONE 2013 8 6 e66678 10.1371/journal.pone.0066678 2-s2.0-84879259855
    • (2013) PLoS ONE , vol.8 , Issue.6
    • Jiang, Y.1    Li, B.Q.2    Zhang, Y.3    Feng, Y.M.4    Gao, Y.F.5    Zhang, N.6    Cai, Y.D.7


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