-
1
-
-
0036726314
-
Yeast genomic databases and the chanllenge of the post-genomic era
-
Garrels JI. Yeast genomic databases and the chanllenge of the post-genomic era. Funct Integr Genomics 2002, 2(4-5):212-237.
-
(2002)
Funct Integr Genomics
, vol.2
, Issue.4-5
, pp. 212-237
-
-
Garrels, J.I.1
-
2
-
-
10244264813
-
Protein Complex Prediction via Cost-based Clustering
-
King AD, Pržulj N, Jurisica I. Protein Complex Prediction via Cost-based Clustering. Bioinformatics 2004, 20:3013-3020.
-
(2004)
Bioinformatics
, vol.20
, pp. 3013-3020
-
-
King, A.D.1
Pržulj, N.2
Jurisica, I.3
-
3
-
-
0034515528
-
A Clustering Algorithm based Graph Connectivity
-
Hartuv E, Shamir R. A Clustering Algorithm based Graph Connectivity. Information Processing Letters 2000, 76:175-181.
-
(2000)
Information Processing Letters
, vol.76
, pp. 175-181
-
-
Hartuv, E.1
Shamir, R.2
-
4
-
-
0037062448
-
Community structure in social and biological networks
-
122977, 12060727
-
Girvan M, Newman MEJ. Community structure in social and biological networks. PNAS 2002, 99:7821-7826. 122977, 12060727.
-
(2002)
PNAS
, vol.99
, pp. 7821-7826
-
-
Girvan, M.1
Newman, M.E.J.2
-
5
-
-
42749100809
-
Fast algorithm for detecting community structure in networks
-
Newman MEJ. Fast algorithm for detecting community structure in networks. Phys Rev E 2004, 69(6):066133.
-
(2004)
Phys Rev E
, vol.69
, Issue.6
, pp. 066133
-
-
Newman, M.E.J.1
-
7
-
-
33846681448
-
Modular organization of protein interaction networks
-
Luo F, Yang Y, Chen CF, Chang R, Zhou J, Scheuermann RH. Modular organization of protein interaction networks. Bioinformatics 2007, 23(2):207-14.
-
(2007)
Bioinformatics
, vol.23
, Issue.2
, pp. 207-214
-
-
Luo, F.1
Yang, Y.2
Chen, C.F.3
Chang, R.4
Zhou, J.5
Scheuermann, R.H.6
-
8
-
-
33645830948
-
CFinder: locating cliques and overlapping modules in biological networks
-
Adamcsek B, Palla G, Farkas IJ, Derenyi I, Vicsek T. CFinder: locating cliques and overlapping modules in biological networks. Bioinformatics 2006, 22(8):1021-3.
-
(2006)
Bioinformatics
, vol.22
, Issue.8
, pp. 1021-1023
-
-
Adamcsek, B.1
Palla, G.2
Farkas, I.J.3
Derenyi, I.4
Vicsek, T.5
-
9
-
-
13444306676
-
CYGD:the Comprehensive Yeast Genome Database
-
540007, 15608217
-
Guldener U, et al. CYGD:the Comprehensive Yeast Genome Database. Nucleic Acids Res 2005, 33:D364-D368. 540007, 15608217.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Guldener, U.1
-
11
-
-
38049081211
-
Betweenness-based decomposition methods for social and biological networks
-
Leeds University Press, S. Barber, P. Baxter, K. Mardia, and R. Walls
-
Pinney JW, Westhead DR. Betweenness-based decomposition methods for social and biological networks. In Interdisciplinary Statistics and Bioinformatics 2007, pp. 87-90. Leeds University Press, S. Barber, P. Baxter, K. Mardia, and R. Walls.
-
(2007)
In Interdisciplinary Statistics and Bioinformatics
-
-
Pinney, J.W.1
Westhead, D.R.2
-
12
-
-
33751166180
-
Identification of Overlapping Community Structure in Complex Networks using Fuzzy C-means Clustering
-
Zhang S, Wang RS, Zhang XS. Identification of Overlapping Community Structure in Complex Networks using Fuzzy C-means Clustering. PHYSICA A 2007, 374:483-490.
-
(2007)
PHYSICA A
, vol.374
, pp. 483-490
-
-
Zhang, S.1
Wang, R.S.2
Zhang, X.S.3
-
13
-
-
0035799707
-
Lethality and centrality in protein networks
-
Jeong H, Mason S, Barabási AL, et al. Lethality and centrality in protein networks. Nature 2001, 411(6833):41-42.
-
(2001)
Nature
, vol.411
, Issue.6833
, pp. 41-42
-
-
Jeong, H.1
Mason, S.2
Barabási, A.L.3
-
15
-
-
20444504323
-
Uncovering the overlapping community structure of complex networks in nature and society
-
Palla G, Dernyi I, Farkas I, Vicsek T. Uncovering the overlapping community structure of complex networks in nature and society. Nature 2005, 435(7043):814-818.
-
(2005)
Nature
, vol.435
, Issue.7043
, pp. 814-818
-
-
Palla, G.1
Dernyi, I.2
Farkas, I.3
Vicsek, T.4
-
16
-
-
34548511546
-
Semantic integration to identify overlapping functional modules in protein interaction networks
-
1971074, 17650343
-
Cho YR, Hwang W, Ramanmathan M, et al. Semantic integration to identify overlapping functional modules in protein interaction networks. BMC Bioinformatics 2007, 8:265. 1971074, 17650343.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 265
-
-
Cho, Y.R.1
Hwang, W.2
Ramanmathan, M.3
-
17
-
-
33744805096
-
Development and implementation of an algorithm for detection of protein complexes in large interaction networks
-
1473204, 16613608
-
Altaf-UI-Amin M, Shinbo Y, Mihara K. Development and implementation of an algorithm for detection of protein complexes in large interaction networks. BMC Bioinformatics 2006, 7:207. 1473204, 16613608.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 207
-
-
Altaf-UI-Amin, M.1
Shinbo, Y.2
Mihara, K.3
-
18
-
-
54349096842
-
Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
-
2570695, 18816408
-
Li M, Chen J, Wang J, Hu B, Chen G. Modifying the DPClus algorithm for identifying protein complexes based on new topological structures. BMC Bioinformatics 2008, 9:398. 2570695, 18816408.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 398
-
-
Li, M.1
Chen, J.2
Wang, J.3
Hu, B.4
Chen, G.5
-
19
-
-
0142059836
-
Protein complexes and functional modules in molecular networks
-
218723, 14517352
-
Spirin V, Mirny LA. Protein complexes and functional modules in molecular networks. PNAS 2003, 100:12123-12128. 218723, 14517352.
-
(2003)
PNAS
, vol.100
, pp. 12123-12128
-
-
Spirin, V.1
Mirny, L.A.2
-
20
-
-
2942552459
-
An Automated Method for Finding Molecular Complexes in Large Protein Interaction Networks
-
149346, 12525261
-
Bader GD, Hogue CW. An Automated Method for Finding Molecular Complexes in Large Protein Interaction Networks. BMC Bioinformatics 2003, 4:2. 149346, 12525261.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 2
-
-
Bader, G.D.1
Hogue, C.W.2
-
21
-
-
33751229605
-
Identification of functional modules in a PPI network by clique percolation clustering
-
Epub 2006 Nov 13
-
Zhang S, Ning X, Zhang XS. Identification of functional modules in a PPI network by clique percolation clustering. Comput Biol Chem 2006, 30(6):445-51. Epub 2006 Nov 13.
-
(2006)
Comput Biol Chem
, vol.30
, Issue.6
, pp. 445-451
-
-
Zhang, S.1
Ning, X.2
Zhang, X.S.3
-
22
-
-
30644463216
-
Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastatis
-
Jonsson P, Cavanna T, Zicha D, Bates P. Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastatis. BMC Bioinform 2006, 7:2.
-
(2006)
BMC Bioinform
, vol.7
, pp. 2
-
-
Jonsson, P.1
Cavanna, T.2
Zicha, D.3
Bates, P.4
-
23
-
-
33748579201
-
Interaction Graph mining for protein complexes using local clique merging
-
Li XL, Tan SH, Foo CS, et al. Interaction Graph mining for protein complexes using local clique merging. Genome Informatics 2005, 16:260-269.
-
(2005)
Genome Informatics
, vol.16
, pp. 260-269
-
-
Li, X.L.1
Tan, S.H.2
Foo, C.S.3
-
24
-
-
9144257282
-
The FunCat: a functional annotation scheme for systematic classication of proteins from whole genomes
-
524302, 15486203
-
Ruepp A, Zollner A, Maier D, et al. The FunCat: a functional annotation scheme for systematic classication of proteins from whole genomes. Nucleic Acids Research 2004, 32:5539-5545. 524302, 15486203.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 5539-5545
-
-
Ruepp, A.1
Zollner, A.2
Maier, D.3
-
26
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
101833, 11917018
-
Enright AJ, Dongen SV, Ouzounis CA. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Research 2002, 30(7):1575-1584. 101833, 11917018.
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.7
, pp. 1575-1584
-
-
Enright, A.J.1
Dongen, S.V.2
Ouzounis, C.A.3
-
27
-
-
12944331889
-
Small-world network approach to identify key residues in protein-protein interaction
-
del Sol A, OMeara P. Small-world network approach to identify key residues in protein-protein interaction. Proteins 2004, 58(3):672-682.
-
(2004)
Proteins
, vol.58
, Issue.3
, pp. 672-682
-
-
del Sol, A.1
OMeara, P.2
-
28
-
-
17444396776
-
Topology of small-world networks of protein-protein complex structures
-
del Sol A, Fujihashi H, OMeara P. Topology of small-world networks of protein-protein complex structures. Bioinformatics 2005, 21(8):1311-1315.
-
(2005)
Bioinformatics
, vol.21
, Issue.8
, pp. 1311-1315
-
-
del Sol, A.1
Fujihashi, H.2
OMeara, P.3
-
29
-
-
34248397539
-
A novel functional module detection algorithm for protein-protein interaction networks
-
Hwang W, Cho YR, Zhang A, et al. A novel functional module detection algorithm for protein-protein interaction networks. Algorithms for Molecular Biology 2006, 12:1-24.
-
(2006)
Algorithms for Molecular Biology
, vol.12
, pp. 1-24
-
-
Hwang, W.1
Cho, Y.R.2
Zhang, A.3
-
30
-
-
0038074373
-
Topological structure analysis of the protein-protein interaction network in budding yeast
-
154226, 12711690
-
Bu D, Zhao Y, Cai L, et al. Topological structure analysis of the protein-protein interaction network in budding yeast. Nucleic Acids Research 2003, 31(9):2443-2450. 154226, 12711690.
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.9
, pp. 2443-2450
-
-
Bu, D.1
Zhao, Y.2
Cai, L.3
-
31
-
-
0345305369
-
Functional modules by relating protein interaction networks and gene expression
-
275479, 14576317
-
Tornow S, Mewes HW. Functional modules by relating protein interaction networks and gene expression. Nucleic Acids Research 2003, 31(21):6283-6289. 275479, 14576317.
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.21
, pp. 6283-6289
-
-
Tornow, S.1
Mewes, H.W.2
|