메뉴 건너뛰기




Volumn 11, Issue SUPPL. 2, 2010, Pages

Identifying protein complexes from interaction networks based on clique percolation and distance restriction

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EID: 78149344632     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-11-S2-S10     Document Type: Article
Times cited : (41)

References (31)
  • 1
    • 0036726314 scopus 로고    scopus 로고
    • Yeast genomic databases and the chanllenge of the post-genomic era
    • Garrels JI. Yeast genomic databases and the chanllenge of the post-genomic era. Funct Integr Genomics 2002, 2(4-5):212-237.
    • (2002) Funct Integr Genomics , vol.2 , Issue.4-5 , pp. 212-237
    • Garrels, J.I.1
  • 2
    • 10244264813 scopus 로고    scopus 로고
    • Protein Complex Prediction via Cost-based Clustering
    • King AD, Pržulj N, Jurisica I. Protein Complex Prediction via Cost-based Clustering. Bioinformatics 2004, 20:3013-3020.
    • (2004) Bioinformatics , vol.20 , pp. 3013-3020
    • King, A.D.1    Pržulj, N.2    Jurisica, I.3
  • 3
    • 0034515528 scopus 로고    scopus 로고
    • A Clustering Algorithm based Graph Connectivity
    • Hartuv E, Shamir R. A Clustering Algorithm based Graph Connectivity. Information Processing Letters 2000, 76:175-181.
    • (2000) Information Processing Letters , vol.76 , pp. 175-181
    • Hartuv, E.1    Shamir, R.2
  • 4
    • 0037062448 scopus 로고    scopus 로고
    • Community structure in social and biological networks
    • 122977, 12060727
    • Girvan M, Newman MEJ. Community structure in social and biological networks. PNAS 2002, 99:7821-7826. 122977, 12060727.
    • (2002) PNAS , vol.99 , pp. 7821-7826
    • Girvan, M.1    Newman, M.E.J.2
  • 5
    • 42749100809 scopus 로고    scopus 로고
    • Fast algorithm for detecting community structure in networks
    • Newman MEJ. Fast algorithm for detecting community structure in networks. Phys Rev E 2004, 69(6):066133.
    • (2004) Phys Rev E , vol.69 , Issue.6 , pp. 066133
    • Newman, M.E.J.1
  • 8
    • 33645830948 scopus 로고    scopus 로고
    • CFinder: locating cliques and overlapping modules in biological networks
    • Adamcsek B, Palla G, Farkas IJ, Derenyi I, Vicsek T. CFinder: locating cliques and overlapping modules in biological networks. Bioinformatics 2006, 22(8):1021-3.
    • (2006) Bioinformatics , vol.22 , Issue.8 , pp. 1021-1023
    • Adamcsek, B.1    Palla, G.2    Farkas, I.J.3    Derenyi, I.4    Vicsek, T.5
  • 9
    • 13444306676 scopus 로고    scopus 로고
    • CYGD:the Comprehensive Yeast Genome Database
    • 540007, 15608217
    • Guldener U, et al. CYGD:the Comprehensive Yeast Genome Database. Nucleic Acids Res 2005, 33:D364-D368. 540007, 15608217.
    • (2005) Nucleic Acids Res , vol.33
    • Guldener, U.1
  • 11
    • 38049081211 scopus 로고    scopus 로고
    • Betweenness-based decomposition methods for social and biological networks
    • Leeds University Press, S. Barber, P. Baxter, K. Mardia, and R. Walls
    • Pinney JW, Westhead DR. Betweenness-based decomposition methods for social and biological networks. In Interdisciplinary Statistics and Bioinformatics 2007, pp. 87-90. Leeds University Press, S. Barber, P. Baxter, K. Mardia, and R. Walls.
    • (2007) In Interdisciplinary Statistics and Bioinformatics
    • Pinney, J.W.1    Westhead, D.R.2
  • 12
    • 33751166180 scopus 로고    scopus 로고
    • Identification of Overlapping Community Structure in Complex Networks using Fuzzy C-means Clustering
    • Zhang S, Wang RS, Zhang XS. Identification of Overlapping Community Structure in Complex Networks using Fuzzy C-means Clustering. PHYSICA A 2007, 374:483-490.
    • (2007) PHYSICA A , vol.374 , pp. 483-490
    • Zhang, S.1    Wang, R.S.2    Zhang, X.S.3
  • 13
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • Jeong H, Mason S, Barabási AL, et al. Lethality and centrality in protein networks. Nature 2001, 411(6833):41-42.
    • (2001) Nature , vol.411 , Issue.6833 , pp. 41-42
    • Jeong, H.1    Mason, S.2    Barabási, A.L.3
  • 15
    • 20444504323 scopus 로고    scopus 로고
    • Uncovering the overlapping community structure of complex networks in nature and society
    • Palla G, Dernyi I, Farkas I, Vicsek T. Uncovering the overlapping community structure of complex networks in nature and society. Nature 2005, 435(7043):814-818.
    • (2005) Nature , vol.435 , Issue.7043 , pp. 814-818
    • Palla, G.1    Dernyi, I.2    Farkas, I.3    Vicsek, T.4
  • 16
    • 34548511546 scopus 로고    scopus 로고
    • Semantic integration to identify overlapping functional modules in protein interaction networks
    • 1971074, 17650343
    • Cho YR, Hwang W, Ramanmathan M, et al. Semantic integration to identify overlapping functional modules in protein interaction networks. BMC Bioinformatics 2007, 8:265. 1971074, 17650343.
    • (2007) BMC Bioinformatics , vol.8 , pp. 265
    • Cho, Y.R.1    Hwang, W.2    Ramanmathan, M.3
  • 17
    • 33744805096 scopus 로고    scopus 로고
    • Development and implementation of an algorithm for detection of protein complexes in large interaction networks
    • 1473204, 16613608
    • Altaf-UI-Amin M, Shinbo Y, Mihara K. Development and implementation of an algorithm for detection of protein complexes in large interaction networks. BMC Bioinformatics 2006, 7:207. 1473204, 16613608.
    • (2006) BMC Bioinformatics , vol.7 , pp. 207
    • Altaf-UI-Amin, M.1    Shinbo, Y.2    Mihara, K.3
  • 18
    • 54349096842 scopus 로고    scopus 로고
    • Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
    • 2570695, 18816408
    • Li M, Chen J, Wang J, Hu B, Chen G. Modifying the DPClus algorithm for identifying protein complexes based on new topological structures. BMC Bioinformatics 2008, 9:398. 2570695, 18816408.
    • (2008) BMC Bioinformatics , vol.9 , pp. 398
    • Li, M.1    Chen, J.2    Wang, J.3    Hu, B.4    Chen, G.5
  • 19
    • 0142059836 scopus 로고    scopus 로고
    • Protein complexes and functional modules in molecular networks
    • 218723, 14517352
    • Spirin V, Mirny LA. Protein complexes and functional modules in molecular networks. PNAS 2003, 100:12123-12128. 218723, 14517352.
    • (2003) PNAS , vol.100 , pp. 12123-12128
    • Spirin, V.1    Mirny, L.A.2
  • 20
    • 2942552459 scopus 로고    scopus 로고
    • An Automated Method for Finding Molecular Complexes in Large Protein Interaction Networks
    • 149346, 12525261
    • Bader GD, Hogue CW. An Automated Method for Finding Molecular Complexes in Large Protein Interaction Networks. BMC Bioinformatics 2003, 4:2. 149346, 12525261.
    • (2003) BMC Bioinformatics , vol.4 , pp. 2
    • Bader, G.D.1    Hogue, C.W.2
  • 21
    • 33751229605 scopus 로고    scopus 로고
    • Identification of functional modules in a PPI network by clique percolation clustering
    • Epub 2006 Nov 13
    • Zhang S, Ning X, Zhang XS. Identification of functional modules in a PPI network by clique percolation clustering. Comput Biol Chem 2006, 30(6):445-51. Epub 2006 Nov 13.
    • (2006) Comput Biol Chem , vol.30 , Issue.6 , pp. 445-451
    • Zhang, S.1    Ning, X.2    Zhang, X.S.3
  • 22
    • 30644463216 scopus 로고    scopus 로고
    • Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastatis
    • Jonsson P, Cavanna T, Zicha D, Bates P. Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastatis. BMC Bioinform 2006, 7:2.
    • (2006) BMC Bioinform , vol.7 , pp. 2
    • Jonsson, P.1    Cavanna, T.2    Zicha, D.3    Bates, P.4
  • 23
    • 33748579201 scopus 로고    scopus 로고
    • Interaction Graph mining for protein complexes using local clique merging
    • Li XL, Tan SH, Foo CS, et al. Interaction Graph mining for protein complexes using local clique merging. Genome Informatics 2005, 16:260-269.
    • (2005) Genome Informatics , vol.16 , pp. 260-269
    • Li, X.L.1    Tan, S.H.2    Foo, C.S.3
  • 24
    • 9144257282 scopus 로고    scopus 로고
    • The FunCat: a functional annotation scheme for systematic classication of proteins from whole genomes
    • 524302, 15486203
    • Ruepp A, Zollner A, Maier D, et al. The FunCat: a functional annotation scheme for systematic classication of proteins from whole genomes. Nucleic Acids Research 2004, 32:5539-5545. 524302, 15486203.
    • (2004) Nucleic Acids Research , vol.32 , pp. 5539-5545
    • Ruepp, A.1    Zollner, A.2    Maier, D.3
  • 26
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • 101833, 11917018
    • Enright AJ, Dongen SV, Ouzounis CA. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Research 2002, 30(7):1575-1584. 101833, 11917018.
    • (2002) Nucleic Acids Research , vol.30 , Issue.7 , pp. 1575-1584
    • Enright, A.J.1    Dongen, S.V.2    Ouzounis, C.A.3
  • 27
    • 12944331889 scopus 로고    scopus 로고
    • Small-world network approach to identify key residues in protein-protein interaction
    • del Sol A, OMeara P. Small-world network approach to identify key residues in protein-protein interaction. Proteins 2004, 58(3):672-682.
    • (2004) Proteins , vol.58 , Issue.3 , pp. 672-682
    • del Sol, A.1    OMeara, P.2
  • 28
    • 17444396776 scopus 로고    scopus 로고
    • Topology of small-world networks of protein-protein complex structures
    • del Sol A, Fujihashi H, OMeara P. Topology of small-world networks of protein-protein complex structures. Bioinformatics 2005, 21(8):1311-1315.
    • (2005) Bioinformatics , vol.21 , Issue.8 , pp. 1311-1315
    • del Sol, A.1    Fujihashi, H.2    OMeara, P.3
  • 29
    • 34248397539 scopus 로고    scopus 로고
    • A novel functional module detection algorithm for protein-protein interaction networks
    • Hwang W, Cho YR, Zhang A, et al. A novel functional module detection algorithm for protein-protein interaction networks. Algorithms for Molecular Biology 2006, 12:1-24.
    • (2006) Algorithms for Molecular Biology , vol.12 , pp. 1-24
    • Hwang, W.1    Cho, Y.R.2    Zhang, A.3
  • 30
    • 0038074373 scopus 로고    scopus 로고
    • Topological structure analysis of the protein-protein interaction network in budding yeast
    • 154226, 12711690
    • Bu D, Zhao Y, Cai L, et al. Topological structure analysis of the protein-protein interaction network in budding yeast. Nucleic Acids Research 2003, 31(9):2443-2450. 154226, 12711690.
    • (2003) Nucleic Acids Research , vol.31 , Issue.9 , pp. 2443-2450
    • Bu, D.1    Zhao, Y.2    Cai, L.3
  • 31
    • 0345305369 scopus 로고    scopus 로고
    • Functional modules by relating protein interaction networks and gene expression
    • 275479, 14576317
    • Tornow S, Mewes HW. Functional modules by relating protein interaction networks and gene expression. Nucleic Acids Research 2003, 31(21):6283-6289. 275479, 14576317.
    • (2003) Nucleic Acids Research , vol.31 , Issue.21 , pp. 6283-6289
    • Tornow, S.1    Mewes, H.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.