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Volumn , Issue , 2014, Pages

Hardware accelerated novel optical de novo assembly for large-scale genomes

Author keywords

[No Author keywords available]

Indexed keywords

FIELD PROGRAMMABLE GATE ARRAYS (FPGA); GENES;

EID: 84911071878     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/FPL.2014.6927499     Document Type: Conference Paper
Times cited : (8)

References (11)
  • 1
    • 70350664649 scopus 로고    scopus 로고
    • De novo transcriptome assembly with abyss
    • I. Birol, S. D. Jackman et al., "De novo transcriptome assembly with abyss, " Bioinformatics, vol. 25, no. 21, pp. 2872-2877, 2009.
    • (2009) Bioinformatics , vol.25 , Issue.21 , pp. 2872-2877
    • Birol, I.1    Jackman, S.D.2
  • 2
    • 84873545544 scopus 로고    scopus 로고
    • Rapid genome mapping in nanochannel arrays for highly complete and accurate de Novo sequence assembly of the complex Aegilops tauschii genome
    • 02
    • A. R. Hastie, L. Dong et al., "Rapid genome mapping in nanochannel arrays for highly complete and accurate De Novo sequence assembly of the complex Aegilops tauschii genome, " PLoS ONE, vol. 8, no. 2, p. e55864, 02 2013.
    • (2013) PLoS ONE , vol.8 , Issue.2 , pp. e55864
    • Hastie, A.R.1    Dong, L.2
  • 4
    • 84864883566 scopus 로고    scopus 로고
    • Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly
    • E. T. Lam, A. Hastie et al., "Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly, " Nature Biotechnology, vol. 30, no. 8, pp. 771-776, 2012.
    • (2012) Nature Biotechnology , vol.30 , Issue.8 , pp. 771-776
    • Lam, E.T.1    Hastie, A.2
  • 7
    • 84881176756 scopus 로고    scopus 로고
    • Fassem: Fpga based acceleration of de novo genome assembly
    • Washington, DC, USA: IEEE Computer Society
    • B. S. C. Varma, K. Paul, M. Balakrishnan, and D. Lavenier, "Fassem: Fpga based acceleration of de novo genome assembly, " in FCCM '13. Washington, DC, USA: IEEE Computer Society, 2013, pp. 173-176.
    • (2013) FCCM , vol.13 , pp. 173-176
    • Varma, B.S.C.1    Paul, K.2    Balakrishnan, M.3    Lavenier, D.4
  • 10
    • 84859048351 scopus 로고    scopus 로고
    • Soap3: Ultra-fast gpu-based parallel alignment tool for short reads
    • C.-M. Liu, T. Wong et al., "Soap3: ultra-fast gpu-based parallel alignment tool for short reads, " Bioinformatics, vol. 28, no. 6, pp. 878-879, 2012.
    • (2012) Bioinformatics , vol.28 , Issue.6 , pp. 878-879
    • Liu, C.-M.1    Wong, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.