메뉴 건너뛰기




Volumn , Issue , 2014, Pages 306-311

Accelerating genome assembly using hard embedded blocks in FPGAs

Author keywords

FPGA based Acceleration; Genome Assembly; Hard Embedded Blocks; NGS assembly

Indexed keywords


EID: 84894599513     PISSN: 10639667     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/VLSID.2014.59     Document Type: Conference Paper
Times cited : (7)

References (19)
  • 1
    • 43149115851 scopus 로고    scopus 로고
    • Velvet algorithms for de novo short read assembly using de bruijn graphs
    • D. R. Zerbino and E. Birney, "Velvet: Algorithms for De Novo Short Read Assembly using De Bruijn Graphs," Genome Research, vol. 18, no. 5, pp. 821-829, 2008.
    • (2008) Genome Research , vol.18 , Issue.5 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 2
    • 79952655567 scopus 로고    scopus 로고
    • A practical comparison of de novo genome assembly software tools for next-Generation sequencing technologies
    • March
    • W. Zhang, J. Chen, Y. Yang, Y. Tang, J. Shang, and B. Shen, "A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies," PLoS ONE, vol. 6, no. 3, March 2011.
    • (2011) PLoS ONE , vol.6 , Issue.3
    • Zhang, W.1    Chen, J.2    Yang, Y.3    Tang, Y.4    Shang, J.5    Shen, B.6
  • 6
    • 70349886587 scopus 로고    scopus 로고
    • PerM efficient mapping of short sequencing reads with periodic full sensitive spaced seeds
    • Y. Chen, T. Souaiaia, and T. Chen, "PerM: Efficient Mapping of Short Sequencing Reads with Periodic full Sensitive Spaced Seeds," Bioinformatics, vol. 25, no. 19, pp. 2514-2521, 2009.
    • (2009) Bioinformatics , vol.25 , Issue.19 , pp. 2514-2521
    • Chen, Y.1    Souaiaia, T.2    Chen, T.3
  • 8
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short dNA sequences to the human genome
    • B. Langmead, C. Trapnell, M. Pop, and S. Salzberg, "Ultrafast and memory-efficient alignment of short DNA sequences to the human genome," Genome Biology, vol. 10, 2009.
    • (2009) Genome Biology , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.4
  • 10
    • 0023988195 scopus 로고
    • Genomic mapping by fingerprinting random clones a mathematical analysis
    • E. S. Lander and M. S. Waterman, "Genomic Mapping by Fingerprinting Random Clones: A mathematical Analysis," Genomics, vol. 2, no. 3, pp. 231-239, 1988.
    • (1988) Genomics , vol.2 , Issue.3 , pp. 231-239
    • Lander, E.S.1    Waterman, M.S.2
  • 17
    • 84858730803 scopus 로고    scopus 로고
    • Mapsembler, targeted and micro assembly of large nGS datasets on a desktop computer
    • P. Peterlongo and R. Chikhi, "Mapsembler, Targeted and Micro Assembly of Large NGS Datasets on a Desktop Computer," BMC Bioinformatics, vol. 13, no. 1, 2012.
    • (2012) BMC Bioinformatics , vol.13 , Issue.1
    • Peterlongo, P.1    Chikhi, R.2
  • 19
    • 84894599311 scopus 로고    scopus 로고
    • Xilinx FPGAs, ISE
    • Xilinx, "Xilinx FPGAs, ISE," www.xilinx.com.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.