-
1
-
-
80054093790
-
Serotype replacement in disease after pneumococcal vaccination
-
Weinberger DM, Malley R, Lipsitch M. 2011. Serotype replacement in disease after pneumococcal vaccination. Lancet 378:1962-1973. http://dx.doi.org/10.1016/S0140-6736(10)62225-8.
-
(2011)
Lancet
, vol.378
, pp. 1962-1973
-
-
Weinberger, D.M.1
Malley, R.2
Lipsitch, M.3
-
2
-
-
84891951124
-
Standard method for detecting upper respiratory carriage of streptococcus pneumoniae: Updated recommendations from the world health organization pneumococcal carriage working group
-
Satzke C, Turner P, Virolainen-Julkunen A, Adrian PV, Antonio M, Hare KM, Henao-Restrepo AM, Leach AJ, Klugman KP, Porter BD, Sa-Leao R, Scott JA, Nohynek H, O'Brien KL, WHO Pneumococcal Carriage Working Group. 2013. Standard method for detecting upper respiratory carriage of Streptococcus pneumoniae: updated recommendations from the World Health Organization Pneumococcal Carriage Working Group. Vaccine 32:165-179. http://dx.doi.org/10.1016/j.vaccine.2013.08.062.
-
(2013)
Vaccine
, vol.32
, pp. 165-179
-
-
Satzke, C.1
Turner, P.2
Virolainen-Julkunen, A.3
Adrian, P.V.4
Antonio, M.5
Hare, K.M.6
Henao-Restrepo, A.M.7
Leach, A.J.8
Klugman, K.P.9
Porter, B.D.10
Sa-Leao, R.11
Scott, J.A.12
Nohynek, H.13
O'brien, K.L.14
-
3
-
-
84897569941
-
Historical development of typing methods for Streptococcus pneumoniae
-
John J, Gopalkrishnan S, Marie MAM, Gowda KL. 2013. Historical development of typing methods for Streptococcus pneumoniae. Rev. Med. Microbiol. 25:27-33. http://dx.doi.org/10.1097/MRM.0000000000000001.
-
(2013)
Rev. Med. Microbiol.
, vol.25
, pp. 27-33
-
-
John, J.1
Gopalkrishnan, S.2
Marie, M.A.M.3
Gowda, K.L.4
-
4
-
-
33645774644
-
Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes
-
Bentley SD, Aanensen DM, Mavroidi A, Saunders D, Rabbinowitsch E, Collins M, Donohoe K, Harris D, Murphy L, Quail MA, Samuel G, Skovsted IC, Kaltoft MS, Barrell B, Reeves PR, Parkhill J, Spratt BG. 2006. Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes. PLoS Genet. 2:e31. http://dx.doi.org/10.1371/journal.pgen.0020031.
-
(2006)
PLoS Genet.
, Issue.2
, pp. e31
-
-
Bentley, S.D.1
Aanensen, D.M.2
Mavroidi, A.3
Saunders, D.4
Rabbinowitsch, E.5
Collins, M.6
Donohoe, K.7
Harris, D.8
Murphy, L.9
Quail, M.A.10
Samuel, G.11
Skovsted, I.C.12
Kaltoft, M.S.13
Barrell, B.14
Reeves, P.R.15
Parkhill, J.16
Spratt, B.G.17
-
5
-
-
30744476257
-
Sequential multiplex PCR approach for determining capsular serotypes of Streptococcus pneumoniae isolates
-
Pai R, Gertz RE, Beall B. 2006. Sequential multiplex PCR approach for determining capsular serotypes of Streptococcus pneumoniae isolates. J. Clin. Microbiol. 44:124-131. http://dx.doi.org/10.1128/JCM.44.1.124-131.2006.
-
(2006)
J. Clin. Microbiol.
, vol.44
, pp. 124-131
-
-
Pai, R.1
Gertz, R.E.2
Beall, B.3
-
6
-
-
84873051570
-
Sequential triplex real-time PCR assay for detecting 21 pneumococcal capsular serotypes that account for a high global disease burden
-
Pimenta FC, Roundtree A, Soysal A, Bakir M, du Plessis M, Wolter N, von Gottberg A, McGee L, Carvalho MG, Beall B. 2013. Sequential triplex real-time PCR assay for detecting 21 pneumococcal capsular serotypes that account for a high global disease burden. J. Clin. Microbiol. 51:647-652. http://dx.doi.org/10.1128/JCM.02927-12.
-
(2013)
J. Clin. Microbiol.
, vol.51
, pp. 647-652
-
-
Pimenta, F.C.1
Roundtree, A.2
Soysal, A.3
Bakir, M.4
Du Plessis, M.5
Wolter, N.6
Von Gottberg, A.7
McGee, L.8
Carvalho, M.G.9
Beall, B.10
-
7
-
-
84894586819
-
Rapid resistome fingerprinting and clonal lineage profiling of carbapenem-resistant Klebsiella pneumoniae by targeted next-generation sequencing
-
Arena F, Rolfe PA, Doran G, Conte V, Gruszka S, Clarke T, Adesokan Y, Giani T, Rossolini GM. 2014. Rapid resistome fingerprinting and clonal lineage profiling of carbapenem-resistant Klebsiella pneumoniae by targeted next-generation sequencing. J. Clin. Microbiol. 52:987-990. http://dx.doi.org/10.1128/JCM.03247-13.
-
(2014)
J. Clin. Microbiol.
, vol.52
, pp. 987-990
-
-
Arena, F.1
Rolfe, P.A.2
Doran, G.3
Conte, V.4
Gruszka, S.5
Clarke, T.6
Adesokan, Y.7
Giani, T.8
Rossolini, G.M.9
-
8
-
-
84907048312
-
Application of a target enrichment-based next-generation sequencing protocol for identification and sequence-based prediction of pneumococcal serotypes
-
Liyanapathirana V, Ang I, Tsang D, Fung K, Ng TK, Zhou H, Ip M. 2014. Application of a target enrichment-based next-generation sequencing protocol for identification and sequence-based prediction of pneumococcal serotypes. BMC Microbiol. 14:60. http://dx.doi.org/10.1186/1471-2180-14-60.
-
(2014)
BMC Microbiol.
, vol.14
, pp. 60
-
-
Liyanapathirana, V.1
Ang, I.2
Tsang, D.3
Fung, K.4
Ng, T.K.5
Zhou, H.6
Ip, M.7
-
9
-
-
84877808560
-
Increased nasopharyngeal carriage of serotypes 6A, 6C, and 6D Streptococcus pneumoniae after introduction of childhood pneumococcal vaccination in Hong Kong
-
Ip M, Chau SSL, Lai LS, Ma H, Chan PKS, Nelson EAS. 2013. Increased nasopharyngeal carriage of serotypes 6A, 6C, and 6D Streptococcus pneumoniae after introduction of childhood pneumococcal vaccination in Hong Kong. Diagn. Microbiol. Infect. Dis. 76:153-157. http://dx.doi.org/10.1016/j.diagmicrobio.2013.02.036.
-
(2013)
Diagn. Microbiol. Infect. Dis.
, vol.76
, pp. 153-157
-
-
Ip, M.1
Chau, S.S.L.2
Lai, L.S.3
Ma, H.4
Chan, P.K.S.5
Nelson, E.A.S.6
-
10
-
-
79955507600
-
Improved detection of nasopharyngeal cocolonization by multiple pneumococcal serotypes by use of latex agglutination or molecular serotyping by microarray
-
Turner P, Hinds J, Turner C, Jankhot A, Gould K, Bentley SD, Nosten F, Goldblatt D. 2011. Improved detection of nasopharyngeal cocolonization by multiple pneumococcal serotypes by use of latex agglutination or molecular serotyping by microarray. J. Clin. Microbiol. 49: 1784-1789. http://dx.doi.org/10.1128/JCM.00157-11.
-
(2011)
J. Clin. Microbiol.
, vol.49
, pp. 1784-1789
-
-
Turner, P.1
Hinds, J.2
Turner, C.3
Jankhot, A.4
Gould, K.5
Bentley, S.D.6
Nosten, F.7
Goldblatt, D.8
-
11
-
-
35348862529
-
Identification of lesscommon Streptococcus pneumoniae serotypes by a multiplex PCR-based reverse line blot hybridization assay
-
Zhou F, Kong F, Tong Z, Gilbert GL. 2007. Identification of lesscommon Streptococcus pneumoniae serotypes by a multiplex PCR-based reverse line blot hybridization assay. J. Clin. Microbiol. 45:3411-3415. http://dx.doi.org/10.1128/JCM.01076-07.
-
(2007)
J. Clin. Microbiol.
, vol.45
, pp. 3411-3415
-
-
Zhou, F.1
Kong, F.2
Tong, Z.3
Gilbert, G.L.4
-
12
-
-
84865046802
-
Not all sequence tags are created equal: Designing and validating sequence identification tags robust to indels
-
Faircloth BC, Glenn TC. 2012. Not all sequence tags are created equal: designing and validating sequence identification tags robust to indels. PLoS One 7:e42543. http://dx.doi.org/10.1371/journal.pone.0042543.
-
(2012)
PLoS One
, vol.7
, pp. e42543
-
-
Faircloth, B.C.1
Glenn, T.C.2
-
13
-
-
0033559113
-
Amplification of cDNA ends based on template-switching effect and step-out PCR
-
Matz M, Shagin D, Bogdanova E, Britanova O, Lukyanov S, Diatchenko L, Chenchik A. 1999. Amplification of cDNA ends based on template-switching effect and step-out PCR. Nucleic Acids Res. 27:1558-1560. http://dx.doi.org/10.1093/nar/27.6.1558.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1558-1560
-
-
Matz, M.1
Shagin, D.2
Bogdanova, E.3
Britanova, O.4
Lukyanov, S.5
Diatchenko, L.6
Chenchik, A.7
-
14
-
-
33646569090
-
Multiplex PCR-based reverse line blot hybridization assay to identify 23 Streptococcus pneumoniae polysaccharide vaccine serotypes
-
Kong F, Brown M, Sabananthan A, Zeng X, Gilbert GL. 2006. Multiplex PCR-based reverse line blot hybridization assay to identify 23 Streptococcus pneumoniae polysaccharide vaccine serotypes. J. Clin. Microbiol. 44: 1887-1891. http://dx.doi.org/10.1128/JCM.44.5.1887-1891.2006.
-
(2006)
J. Clin. Microbiol.
, vol.44
, pp. 1887-1891
-
-
Kong, F.1
Brown, M.2
Sabananthan, A.3
Zeng, X.4
Gilbert, G.L.5
-
15
-
-
84862727212
-
Sequetyping: Serotyping Streptococcus pneumoniae by a single PCR sequencing strategy
-
Leung MH, Bryson K, Freystatter K, Pichon B, Edwards G, Charalambous BM, Gillespie SH. 2012. Sequetyping: serotyping Streptococcus pneumoniae by a single PCR sequencing strategy. J. Clin. Microbiol. 50: 2419-2427. http://dx.doi.org/10.1128/JCM.06384-11.
-
(2012)
J. Clin. Microbiol.
, vol.50
, pp. 2419-2427
-
-
Leung, M.H.1
Bryson, K.2
Freystatter, K.3
Pichon, B.4
Edwards, G.5
Charalambous, B.M.6
Gillespie, S.H.7
-
16
-
-
84862112377
-
Concurrent serotyping and genotyping of pneumococci by use of PCR and electrospray ionization mass spectrometry
-
Massire C, Gertz RE, Svoboda P, Levert K, Reed MS, Pohl J, Kreft R, Li F, White N, Ranken R, Blyn LB, Ecker DJ, Sampath R, Beall B. 2012. Concurrent serotyping and genotyping of pneumococci by use of PCR and electrospray ionization mass spectrometry. J. Clin. Microbiol. 50: 2018-2025. http://dx.doi.org/10.1128/JCM.06735-11.
-
(2012)
J. Clin. Microbiol.
, vol.50
, pp. 2018-2025
-
-
Massire, C.1
Gertz, R.E.2
Svoboda, P.3
Levert, K.4
Reed, M.S.5
Pohl, J.6
Kreft, R.7
Li, F.8
White, N.9
Ranken, R.10
Blyn, L.B.11
Ecker, D.J.12
Sampath, R.13
Beall, B.14
-
17
-
-
84884535943
-
Serotyping of Streptococcus pneumoniae based on capsular genes polymorphisms
-
Raymond F, Boucher N, Allary R, Robitaille L, Lefebvre B, Tremblay C, Corbeil J, Gervaix A. 2013. Serotyping of Streptococcus pneumoniae based on capsular genes polymorphisms. PLoS One 8:e76197. http://dx.doi.org/10.1371/journal.pone.0076197.
-
(2013)
PLoS One
, vol.8
, pp. e76197
-
-
Raymond, F.1
Boucher, N.2
Allary, R.3
Robitaille, L.4
Lefebvre, B.5
Tremblay, C.6
Corbeil, J.7
Gervaix, A.8
-
18
-
-
84894586819
-
Rapid resistome fingerprinting and clonal lineage profiling of carbapenem-resistant Klebsiella pneumoniae isolates by targeted next-generation sequencing
-
Arena F, Rolfe PA, Doran G, Conte V, Gruszka S, Clarke T, Adesokan Y, Giani T, Rossolini GM. 2014. Rapid resistome fingerprinting and clonal lineage profiling of carbapenem-resistant Klebsiella pneumoniae isolates by targeted next-generation sequencing. J. Clin. Microbiol. 52: 987-990. http://dx.doi.org/10.1128/JCM.03247-13.
-
(2014)
J. Clin. Microbiol.
, vol.52
, pp. 987-990
-
-
Arena, F.1
Rolfe, P.A.2
Doran, G.3
Conte, V.4
Gruszka, S.5
Clarke, T.6
Adesokan, Y.7
Giani, T.8
Rossolini, G.M.9
-
19
-
-
77949511183
-
Realtime PCR is more sensitive than multiplex PCR for diagnosis and serotyping in children with culture negative pneumococcal invasive disease
-
Azzari C, Moriondo M, Indolfi G, Cortimiglia M, Canessa C, Becciolini L, Lippi F, de Martino M, Resti M. 2010. Realtime PCR is more sensitive than multiplex PCR for diagnosis and serotyping in children with culture negative pneumococcal invasive disease. PLoS One 5:e9282. http://dx.doi.org/10.1371/journal.pone.0009282.
-
(2010)
PLoS One
, vol.5
, pp. e9282
-
-
Azzari, C.1
Moriondo, M.2
Indolfi, G.3
Cortimiglia, M.4
Canessa, C.5
Becciolini, L.6
Lippi, F.7
De Martino, M.8
Resti, M.9
-
20
-
-
77955457923
-
Detection of large numbers of pneumococcal virulence genes in streptococci of the mitis group
-
Johnston C, Hinds J, Smith A, van der Linden M, Van Eldere J, Mitchell TJ. 2010. Detection of large numbers of pneumococcal virulence genes in streptococci of the mitis group. J. Clin. Microbiol. 48:2762-2769. http://dx.doi.org/10.1128/JCM.01746-09.
-
(2010)
J. Clin. Microbiol.
, vol.48
, pp. 2762-2769
-
-
Johnston, C.1
Hinds, J.2
Smith, A.3
Van Der Linden, M.4
Van Eldere, J.5
Mitchell, T.J.6
-
21
-
-
84865190595
-
Potential nonpneumococcal confounding of PCR-based determination of serotype in carriage
-
Carvalho MG, Jagero G, Bigogo GM, Junghae M, Pimenta FC, Moura I, Roundtree A, Li Z, Conklin L, Feikin DR, Breiman RF, Whitney CG, Beall B. 2012. Potential nonpneumococcal confounding of PCR-based determination of serotype in carriage. J. Clin. Microbiol. 50:3146-3147. http://dx.doi.org/10.1128/JCM.01505-12.
-
(2012)
J. Clin. Microbiol.
, vol.50
, pp. 3146-3147
-
-
Carvalho, M.G.1
Jagero, G.2
Bigogo, G.M.3
Junghae, M.4
Pimenta, F.C.5
Moura, I.6
Roundtree, A.7
Li, Z.8
Conklin, L.9
Feikin, D.R.10
Breiman, R.F.11
Whitney, C.G.12
Beall, B.13
-
22
-
-
84869429716
-
Assuring the quality of next-generation sequencing in clinical laboratory practice
-
Gargis AS, Kalman L, Berry MW, Bick DP, Dimmock DP, Hambuch T, Lu F, Lyon E, Voelkerding KV, Zehnbauer BA, Agarwala R, Bennett SF, Chen B, Chin EL, Compton JG, Das S, Farkas DH, Ferber MJ, Funke BH, Furtado MR, Ganova-Raeva LM, Geigenmuller U, Gunselman SJ, Hegde MR, Johnson PL, Kasarskis A, Kulkarni S, Lenk T, Liu CS, Manion M, Manolio TA, Mardis ER, Merker JD, Rajeevan MS, Reese MG, Rehm HL, Simen BB, Yeakley JM, Zook JM, Lubin IM. 2012. Assuring the quality of next-generation sequencing in clinical laboratory practice. Nat. Biotechnol. 30:1033-1036. http://dx.doi.org/10.1038/nbt.2403.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 1033-1036
-
-
Gargis, A.S.1
Kalman, L.2
Berry, M.W.3
Bick, D.P.4
Dimmock, D.P.5
Hambuch, T.6
Lu, F.7
Lyon, E.8
Voelkerding, K.V.9
Zehnbauer, B.A.10
Agarwala, R.11
Bennett, S.F.12
Chen, B.13
Chin, E.L.14
Compton, J.G.15
Das, S.16
Farkas, D.H.17
Ferber, M.J.18
Funke, B.H.19
Furtado, M.R.20
Ganova-Raeva, L.M.21
Geigenmuller, U.22
Gunselman, S.J.23
Hegde, M.R.24
Johnson, P.L.25
Kasarskis, A.26
Kulkarni, S.27
Lenk, T.28
Liu, C.S.29
Manion, M.30
Manolio, T.A.31
Mardis, E.R.32
Merker, J.D.33
Rajeevan, M.S.34
Reese, M.G.35
Rehm, H.L.36
Simen, B.B.37
Yeakley, J.M.38
Zook, J.M.39
Lubin, I.M.40
more..
-
23
-
-
4644283256
-
Immunoblot method to detect Streptococcus pneumoniae and identify multiple serotypes from nasopharyngeal secretions
-
Bronsdon MA, O'Brien KL, Facklam RR, Whitney CG, Schwartz B, Carlone GM. 2004. Immunoblot method to detect Streptococcus pneumoniae and identify multiple serotypes from nasopharyngeal secretions. J. Clin. Microbiol. 42:1596-1600. http://dx.doi.org/10.1128/JCM.42.4.1596-1600.2004.
-
(2004)
J. Clin. Microbiol.
, vol.42
, pp. 1596-1600
-
-
Bronsdon, M.A.1
O'brien, K.L.2
Facklam, R.R.3
Whitney, C.G.4
Schwartz, B.5
Carlone, G.M.6
-
24
-
-
77951772175
-
Revisiting pneumococcal carriage by use of broth enrichment and PCR techniques for enhanced detection of carriage and serotypes
-
Carvalho MG, Pimenta FC, Jackson D, Roundtree A, Ahmad Y, Millar EV, O'Brien KL, Whitney CG, Cohen AL, Beall BW. 2010. Revisiting pneumococcal carriage by use of broth enrichment and PCR techniques for enhanced detection of carriage and serotypes. J. Clin. Microbiol. 48: 1611-1618. http://dx.doi.org/10.1128/JCM.02243-09.
-
(2010)
J. Clin. Microbiol.
, vol.48
, pp. 1611-1618
-
-
Carvalho, M.G.1
Pimenta, F.C.2
Jackson, D.3
Roundtree, A.4
Ahmad, Y.5
Millar, E.V.6
O'brien, K.L.7
Whitney, C.G.8
Cohen, A.L.9
Beall, B.W.10
-
25
-
-
67650646463
-
Multiplex PCR reveals a high rate of nasopharyngeal pneumococcal 7-valent conjugate vaccine serotypes co-colonizing indigenous Warao children in Venezuela
-
Rivera-Olivero IA, Blommaart M, Bogaert D, Hermans PWM, de Waard JH. 2009. Multiplex PCR reveals a high rate of nasopharyngeal pneumococcal 7-valent conjugate vaccine serotypes co-colonizing indigenous Warao children in Venezuela. J. Med. Microbiol. 58:584-587. http://dx.doi.org/10.1099/jmm.0.006726-0.
-
(2009)
J. Med. Microbiol.
, vol.58
, pp. 584-587
-
-
Rivera-Olivero, I.A.1
Blommaart, M.2
Bogaert, D.3
Hermans, P.W.M.4
De Waard, J.H.5
-
26
-
-
40949138329
-
Random colony selection versus colony morphology for detection of multiple pneumococcal serotypes in nasopharyngeal swabs
-
Hare KM, Morris P, Smith-Vaughan H, Leach AJ. 2008. Random colony selection versus colony morphology for detection of multiple pneumococcal serotypes in nasopharyngeal swabs. Pediatr. Infect. Dis. J. 27:178-180. http://dx.doi.org/10.1097/INF.0b013e31815bb6c5.
-
(2008)
Pediatr. Infect. Dis. J.
, vol.27
, pp. 178-180
-
-
Hare, K.M.1
Morris, P.2
Smith-Vaughan, H.3
Leach, A.J.4
-
27
-
-
0033755312
-
Lack of utility of serotyping multiple colonies for detection of simultaneous nasopharyngeal carriage of different pneumococcal serotypes
-
Huebner RE, Dagan R, Porath N, Wasas AD, Klugman KP. 2000. Lack of utility of serotyping multiple colonies for detection of simultaneous nasopharyngeal carriage of different pneumococcal serotypes. Pediatr. Infect. Dis. J. 19:1017-1020. http://dx.doi.org/10.1097/00006454-200010000-00019.
-
(2000)
Pediatr. Infect. Dis. J.
, vol.19
, pp. 1017-1020
-
-
Huebner, R.E.1
Dagan, R.2
Porath, N.3
Wasas, A.D.4
Klugman, K.P.5
-
28
-
-
84864411538
-
From Quellung to multiplex PCR, and back when needed, in pneumococcal serotyping
-
Siira L, Kaijalainen T, Lambertsen L, Nahm MH, Toropainen M, Virolainen A. 2012. From Quellung to multiplex PCR, and back when needed, in pneumococcal serotyping. J. Clin. Microbiol. 50:2727-2731. http://dx.doi.org/10.1128/JCM.00689-12.
-
(2012)
J. Clin. Microbiol.
, vol.50
, pp. 2727-2731
-
-
Siira, L.1
Kaijalainen, T.2
Lambertsen, L.3
Nahm, M.H.4
Toropainen, M.5
Virolainen, A.6
|