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Volumn 2, Issue JAN, 2012, Pages

Six degrees of epistasis: Statistical network models for GWAS

Author keywords

Epistasis network; Genetic association interaction network; Missing heritability

Indexed keywords


EID: 84862487776     PISSN: None     EISSN: 16648021     Source Type: Journal    
DOI: 10.3389/fgene.2011.00109     Document Type: Short Survey
Times cited : (43)

References (39)
  • 1
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: understanding the cells functional organization
    • Barabasi, A. L., and Oltvai, Z. N. (2004). Network biology: understanding the cells functional organization. Nat. Rev. Genet. 5, 101-113.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 2
    • 33750466904 scopus 로고    scopus 로고
    • Small-world brain networks
    • Bassett, D. S., and Bullmore, E. (2006). Small-world brain networks. Neuro-scientist 12, 512-523.
    • (2006) Neuro-scientist , vol.12 , pp. 512-523
    • Bassett, D.S.1    Bullmore, E.2
  • 8
    • 67349166946 scopus 로고    scopus 로고
    • Detecting gene-gene interactions that underlie human diseases
    • Cordell, H. J. (2009). Detecting gene-gene interactions that underlie human diseases. Nat. Rev. Genet. 10, 392-404.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 392-404
    • Cordell, H.J.1
  • 9
    • 78649701338 scopus 로고    scopus 로고
    • Surfing a genetic association interaction network to identify modulators of antibody response to smallpox vaccine
    • Davis, N. A., Crowe, J. E. Jr., Pajewski, N. M., and McKinney, B. A. (2010). Surfing a genetic association interaction network to identify modulators of antibody response to smallpox vaccine. Genes Immun. 11, 630-636.
    • (2010) Genes Immun , vol.11 , pp. 630-636
    • Davis, N.A.1    Crowe Jr, J.E.2    Pajewski, N.M.3    McKinney, B.A.4
  • 11
    • 77952557918 scopus 로고    scopus 로고
    • Missing heritability and strategies for finding the underlying causes of complex disease
    • Eichler, E. E., Flint, J., Gibson, G., Kong, A., Leal, S. M., Moore, J. H., and Nadeau, J. H. (2010). Missing heritability and strategies for finding the underlying causes of complex disease. Nat. Rev. Genet. 11, 446-450.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 446-450
    • Eichler, E.E.1    Flint, J.2    Gibson, G.3    Kong, A.4    Leal, S.M.5    Moore, J.H.6    Nadeau, J.H.7
  • 12
    • 80054755102 scopus 로고    scopus 로고
    • Entropy-based information gain approaches to detect and to characterize gene-gene and gene-environment interactions/correlations of complex diseases
    • Fan, R., Zhong, M., Wang, S., Zhang, Y., Andrew, A., Karagas, M., Chen, H., Amos, C. I., Xiong, M., and Moore, J. H. (2011). Entropy-based information gain approaches to detect and to characterize gene-gene and gene-environment interactions/correlations of complex diseases. Genet. Epidemiol. 35, 706-721.
    • (2011) Genet. Epidemiol. , vol.35 , pp. 706-721
    • Fan, R.1    Zhong, M.2    Wang, S.3    Zhang, Y.4    Andrew, A.5    Karagas, M.6    Chen, H.7    Amos, C.I.8    Xiong, M.9    Moore, J.H.10
  • 14
    • 40149087235 scopus 로고    scopus 로고
    • Data and theory point to mainly additive genetic variance for complex traits
    • doi:10.1371/journal.pgen.1000008
    • Hill, W. G., Goddard, M. E., and Visscher, P. M. (2008). Data and theory point to mainly additive genetic variance for complex traits. PLoS Genet. 4, e1000008. doi:10.1371/journal.pgen.1000008
    • (2008) PLoS Genet , vol.4
    • Hill, W.G.1    Goddard, M.E.2    Visscher, P.M.3
  • 15
    • 79959918492 scopus 로고    scopus 로고
    • Evolving hard problems: generating human genetics datasets with a complex etiology
    • Himmelstein, D. S., Greene, C. S., and Moore, J. H. (2011). Evolving hard problems: generating human genetics datasets with a complex etiology. BioDataMin. 4, 21.
    • (2011) BioDataMin , vol.4 , pp. 21
    • Himmelstein, D.S.1    Greene, C.S.2    Moore, J.H.3
  • 17
    • 84887989803 scopus 로고
    • A new measure of rank correlation. Biometrika 30, 81-89. Kraft, P., Zeggini, E., and Ioannidis, J. P. (2009). Replication in genome-wide association studies
    • Kendall, M. (1938). A new measure of rank correlation. Biometrika 30, 81-89. Kraft, P., Zeggini, E., and Ioannidis, J. P. (2009). Replication in genome-wide association studies. Stat. Sci. 24, 561-573.
    • (1938) Stat. Sci. , vol.24 , pp. 561-573
    • Kendall, M.1
  • 18
    • 56549090945 scopus 로고    scopus 로고
    • The Yin and Yang of HLA and KIR in human disease
    • Kulkarni, S., Martin, M. P., and Carring-ton, M. (2008). The Yin and Yang of HLA and KIR in human disease. Semin. Immunol. 20, 343-352.
    • (2008) Semin. Immunol , vol.20 , pp. 343-352
    • Kulkarni, S.1    Martin, M.P.2    Carring-ton, M.3
  • 20
    • 79952489475 scopus 로고    scopus 로고
    • Estimating missing heritability for disease from genome-wide association studies
    • Lee, S. H., Wray, N. R., Goddard, M. E., and Visscher, P. M. (2011a). Estimating missing heritability for disease from genome-wide association studies. Am. J. Hum. Genet. 88, 294-305.
    • (2011) Am. J. Hum. Genet. , vol.88 , pp. 294-305
    • Lee, S.H.1    Wray, N.R.2    Goddard, M.E.3    Visscher, P.M.4
  • 21
    • 79959898376 scopus 로고    scopus 로고
    • Prioritizing candidate disease genes by network-based boosting of genome-wide association data
    • Lee, I., Blom, U. M., Wang, P. I., Shim, J. E., and Marcotte, E. M. (2011b). Prioritizing candidate disease genes by network-based boosting of genome-wide association data. Genome Res. 21, 1109-1121.
    • (2011) Genome Res , vol.21 , pp. 1109-1121
    • Lee, I.1    Blom, U.M.2    Wang, P.I.3    Shim, J.E.4    Marcotte, E.M.5
  • 24
    • 63449100294 scopus 로고    scopus 로고
    • Capturing the spectrum of interaction effects in genetic association studies by simulated evaporative cooling network analysis
    • doi:10.1371/journal.pgen.1000432
    • McKinney, B. A., Crowe, J. E., Guo, J., and Tian, D. (2009). Capturing the spectrum of interaction effects in genetic association studies by simulated evaporative cooling network analysis. PLoS Genet. 5, e1000432. doi:10.1371/journal.pgen.1000432
    • (2009) PLoS Genet , vol.5
    • McKinney, B.A.1    Crowe, J.E.2    Guo, J.3    Tian, D.4
  • 26
    • 33745599582 scopus 로고    scopus 로고
    • A flexible computational framework for detecting, characterizing, and interpreting statistical patterns of epistasis in genetic studies of human disease susceptibility
    • Moore, J. H., Gilbert, J. C., Tsai, C. T., Chiang, F. T., Holden, T., Barney, N., and White, B. C. (2006). A flexible computational framework for detecting, characterizing, and interpreting statistical patterns of epistasis in genetic studies of human disease susceptibility. J. Theor. Biol. 241, 252-261.
    • (2006) J. Theor. Biol. , vol.241 , pp. 252-261
    • Moore, J.H.1    Gilbert, J.C.2    Tsai, C.T.3    Chiang, F.T.4    Holden, T.5    Barney, N.6    White, B.C.7
  • 28
    • 0003780986 scopus 로고    scopus 로고
    • The PageRank Citation Ranking: Bringing Order to the Web. Technical Report
    • Page, L., Brin, S., Motwani, R., and Winograd, T. (1999). The PageRank Citation Ranking: Bringing Order to the Web. Technical Report, Stanford InfoLab, 1-17.
    • (1999) Stanford InfoLab , pp. 1-17
    • Page, L.1    Brin, S.2    Motwani, R.3    Winograd, T.4
  • 30
    • 0034973569 scopus 로고    scopus 로고
    • Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer
    • Ritchie, M. D., Hahn, L. W., Roodi, N., Bailey, L. R., Dupont, W D., Parl, F. F., and Moore, J. H. (2001). Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer. Am. J. Hum. Genet. 69, 138-147.
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 138-147
    • Ritchie, M.D.1    Hahn, L.W.2    Roodi, N.3    Bailey, L.R.4    Dupont, W.D.5    Parl, F.F.6    Moore, J.H.7
  • 33
    • 0037387365 scopus 로고    scopus 로고
    • Does accounting for gene-environment (GxE) interaction increase the power to detect the effect of a gene in amul-tifactorial disease? Genet
    • Selinger-Leneman, H., Genin, E., Nor-ris, J. M., and Khlat, M. (2003). Does accounting for gene-environment (GxE) interaction increase the power to detect the effect of a gene in amul-tifactorial disease? Genet. Epidemiol. 24, 200-207.
    • (2003) Epidemiol , vol.24 , pp. 200-207
    • Selinger-Leneman, H.1    Genin, E.2    Nor-ris, J.M.3    Khlat, M.4
  • 35
    • 75649149885 scopus 로고    scopus 로고
    • Methodological challenges of genome-wide association analysis in Africa
    • Teo, Y Y, Small, K. S., and Kwiatkowski, D. P. (2010). Methodological challenges of genome-wide association analysis in Africa. Nat. Rev. Genet. 11, 149-160.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 149-160
    • Teo, Y.Y.1    Small, K.S.2    Kwiatkowski, D.P.3
  • 36
    • 53649098737 scopus 로고    scopus 로고
    • Pathway analysis of seven common diseases assessed by genome-wide association
    • Torkamani, A., Topol, E. J., and Schork, N. J. (2008). Pathway analysis of seven common diseases assessed by genome-wide association. Genomics 92, 265-272.
    • (2008) Genomics , vol.92 , pp. 265-272
    • Torkamani, A.1    Topol, E.J.2    Schork, N.J.3
  • 38
    • 84860151961 scopus 로고    scopus 로고
    • Evidence-based psychiatric genetics AKA the false dichotomy between common and rare variant hypotheses
    • doi:10.1038/mp.2011.65. [Epub ahead of print]
    • Visscher, P. M., Goddard, M. E., Derks, E. M., and Wray, N. R. (2011). Evidence-based psychiatric genetics, AKA the false dichotomy between common and rare variant hypotheses. Mol Psychiatry 14. doi:10.1038/mp.2011.65. [Epub ahead of print].
    • (2011) Mol Psychiatry , vol.14
    • Visscher, P.M.1    Goddard, M.E.2    Derks, E.M.3    Wray, N.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.