메뉴 건너뛰기




Volumn 15, Issue 1, 2014, Pages

Bison: Bisulfite alignment on nodes of a cluster

Author keywords

Alignment; Bisulfite sequencing; Computer cluster; DNA Methylation

Indexed keywords

HYDROGEN SULFITE; SULFITE;

EID: 84910108681     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-15-337     Document Type: Note
Times cited : (11)

References (17)
  • 1
    • 84863986133 scopus 로고    scopus 로고
    • Functions of DNA methylation: islands, start sites, gene bodies and beyond
    • Jones PA: Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat Rev Genet 2012, 13:484-492.
    • (2012) Nat Rev Genet , vol.13 , pp. 484-492
    • Jones, P.A.1
  • 2
    • 79957868920 scopus 로고    scopus 로고
    • Bismark: a flexible aligner and methylation caller for bisulfite-Seq applications
    • Krueger F, Andrews SR: Bismark: a flexible aligner and methylation caller for bisulfite-Seq applications. Bioinformatics 2011, 27:1571-1572.
    • (2011) Bioinformatics , vol.27 , pp. 1571-1572
    • Krueger, F.1    Andrews, S.R.2
  • 3
    • 84856498057 scopus 로고    scopus 로고
    • DNA methylome analysis using short bisulfite sequencing data
    • Krueger F, Kreck B, Franke A, Andrews SR: DNA methylome analysis using short bisulfite sequencing data. Nat Methods 2012, 9:145-151.
    • (2012) Nat Methods , vol.9 , pp. 145-151
    • Krueger, F.1    Kreck, B.2    Franke, A.3    Andrews, S.R.4
  • 5
    • 84866853818 scopus 로고    scopus 로고
    • BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
    • Hansen KD, Langmead B, Irizarry RA: BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions. Genome Biol 2012, 13:R83.
    • (2012) Genome Biol , vol.13 , pp. R83
    • Hansen, K.D.1    Langmead, B.2    Irizarry, R.A.3
  • 7
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead B, Salzberg SL: Fast gapped-read alignment with Bowtie 2. Nat Methods 2012, 9:357-359.
    • (2012) Nat Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 8
    • 68949141599 scopus 로고    scopus 로고
    • BSMAP: whole genome bisulfite sequence MAPping program
    • Xi Y, Li W: BSMAP: whole genome bisulfite sequence MAPping program. BMC Bioinformatics 2009, 10:232.
    • (2009) BMC Bioinformatics , vol.10 , pp. 232
    • Xi, Y.1    Li, W.2
  • 12
    • 84879895082 scopus 로고    scopus 로고
    • Detection of significantly differentially methylated regions in targeted bisulfite sequencing data
    • Hebestreit K, Dugas M, Klein HU: Detection of significantly differentially methylated regions in targeted bisulfite sequencing data. Bioinformatics 2013, 29:1647-1653.
    • (2013) Bioinformatics , vol.29 , pp. 1647-1653
    • Hebestreit, K.1    Dugas, M.2    Klein, H.U.3
  • 13
    • 84903689772 scopus 로고    scopus 로고
    • Genomewide, quantitative analysis of DNA methylation from bisulfite sequencing data
    • Akman K, Haaf T, Gravina S, Vijg J, Tresch A: Genomewide, quantitative analysis of DNA methylation from bisulfite sequencing data. Bioinformatics 2014, 30:1933-1934.
    • (2014) Bioinformatics , vol.30 , pp. 1933-1934
    • Akman, K.1    Haaf, T.2    Gravina, S.3    Vijg, J.4    Tresch, A.5
  • 16
    • 80052937538 scopus 로고    scopus 로고
    • Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates
    • Molaro A, Hodges E, Fang F, Song Q, McCombie WR, Hannon GJ, Smith AD: Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates. Cell 2011, 146:1029-1041.
    • (2011) Cell , vol.146 , pp. 1029-1041
    • Molaro, A.1    Hodges, E.2    Fang, F.3    Song, Q.4    McCombie, W.R.5    Hannon, G.J.6    Smith, A.D.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.