Thermomonas carbonis sp. nov., Isolated from the soil of a coal mine

International Journal of Systematic and Evolutionary Microbiology

Volumn 64, Issue , 2014, Pages 3631-3635

  Wang, Liang ^a   Zheng, Shixue ^a   Wang, Dan ^a   Wang, L ^a   Wang, Gejiao ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AMINOPHOSPHOLIPID; CARDIOLIPIN; FATTY ACID; ISOPRENOID; PHOSPHATIDYLGLYCEROL; PHOSPHOLIPID; QUINONE DERIVATIVE; RNA 16S; BACTERIAL DNA; COAL; UBIQUINONE; UBIQUINONE 8;

ARTICLE; BACTERIAL GROWTH; BACTERIUM ISOLATE; CELL STRUCTURE; COAL MINING; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; LYSOBACTER; MAXIMUM LIKELIHOOD METHOD; MICROBIAL IDENTIFICATION; MICROSCOPY; NONHUMAN; PHYLOGENETIC TREE; RENATURATION; SOIL; SOIL ANALYSIS; THERMOMONAS BREVIS; THERMOMONAS CARBONIS; THERMOMONAS FUSCA; THERMOMONAS HAEMOLYTICA; THERMOMONAS HYDROTHERMALIS; THERMOMONAS KOREENSIS; TRANSMISSION ELECTRON MICROSCOPY; TYPE STRAIN; BACTERIUM IDENTIFICATION; CHEMISTRY; CHINA; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MINING; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; XANTHOMONADACEAE;

THERMOMONAS;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; COAL; DNA, BACTERIAL; FATTY ACIDS; MINING; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; UBIQUINONE; XANTHOMONADACEAE;

EID: 84910101021     PISSN: 14665026     EISSN: 14665034     Source Type: Journal    
DOI: 10.1099/ijs.0.063800-0     Document Type: Article

References (24)

1. Alves, M. P., Rainey, F. A., Nobre, M. F. & da Costa, M. S. (2003). Thermomonas hydrothermalis sp. nov., a new slightly thermophilic cproteobacterium isolated from a hot spring in central Portugal. Syst Appl Microbiol 26, 70-75.
2. Busse, H.-J., Kämpfer, P., Moore, E. R. B., Nuutinen, J., Tsitko, I. V., Denner, E. B., Vauterin, L., Valens, M., Rosselló-Mora, R. & Salkinoja-Salonen, M. S. (2002). Thermomonas haemolytica gen. nov., sp. nov., a c-proteobacterium from kaolin slurry. Int J Syst Evol Microbiol 52, 473-483.
3. Collins, M. D. & Jones, D. (1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid. J Appl Bacteriol 48, 459-470.
4. Dong, X.-Z. & Cai, M.-Y. (2001). Determinative Manual for Routine Bacteriology. Beijing: Scientific Press.
5. Dussault, H. P. (1955). An improved technique for staining red halophilic bacteria. J Bacteriol 70, 484-485.
6. Fan, H., Su, C., Wang, Y., Yao, J., Zhao, K., Wang, Y. & Wang, G. (2008). Sedimentary arsenite-oxidizing and arsenate-reducing bacteria associated with high arsenic groundwater from Shanyin, Northwestern China. J Appl Microbiol 105, 529-539.
7. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
8. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
9. Guindon, S., Dufayard, J. F., Lefort, V., Anisimova, M., Hordijk, W. & Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59, 307-321.
10. Hugh, R. & Leifson, E. (1953). The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram negative bacteria. J Bacteriol 66, 24-26.
11. Huss, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
12. Kim, M. K., Im, W.-T., In, J.-G., Kim, S.-H. & Yang, D. C. (2006). Thermomonas koreensis sp. nov., a mesophilic bacterium isolated from a ginseng field. Int J Syst Evol Microbiol 56, 1615-1619.
13. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
14. Kumari, K., Sharma, P., Tyagi, K. & Lal, R. (2011). Pseudoxanthomonas indica sp. nov., isolated from a hexachlorocyclohexane dumpsite. Int J Syst Evol Microbiol 61, 2107-2111.
15. Mergaert, J., Cnockaert, M. C. & Swings, J. (2003). Thermomonas fusca sp. nov. and Thermomonas brevis sp. nov., two mesophilic species isolated from a denitrification reactor with poly(e-caprolactone) plastic granules as fixed bed, and emended description of the genus Thermomonas. Int J Syst Evol Microbiol 53, 1961-1966.
16. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
17. Minnikin, D. E., O’ Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
18. Ryu, E. (1938). On the Gram-differentiation of bacteria by the simplest method. J Jpn Soc Vet Sci 17, 58-63.
19. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
20. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
21. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
22. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
23. Yassin, A. F., Chen, W. M., Hupfer, H., Siering, C., Kroppenstedt, R. M., Arun, A. B., Lai, W. A., Shen, F. T., Rekha, P. D. & Young, C. C. (2007). Lysobacter defluvii sp. nov., isolated from municipal solid waste. Int J Syst Evol Microbiol 57, 1131-1136.
24. Zhang, J. Y., Liu, X. Y. & Liu, S. J. (2011). Frateuria terrea sp. nov., isolated from forest soil, and emended description of the genus Frateuria. Int J Syst Evol Microbiol 61, 443-447.