Thermomonas fusca sp. nov. and Thermomonas brevis sp. nov., two mesophilic species isolated from a denitrification reactor with poly(E-caprolactone) plastic granules as fixed bed, and emended description of the genus Thermomonas

International Journal of Systematic and Evolutionary Microbiology

Volumn 53, Issue 6, 2003, Pages 1961-1966

  Mergaert, Joris ^a,b   Cnockaert, Margo C ^a   Swings, Jean ^a  

^a GHENT UNIVERSITY   (Belgium)

^b NONE   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CELL EXTRACT; CYTOSINE; FATTY ACID; GUANINE; PALINDROMIC DNA; PLASTIC; POLYCAPROLACTONE; RNA 16S;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; BIOFILM; CONTROLLED STUDY; DENITRIFICATION; DNA HYBRIDIZATION; FATTY ACID ANALYSIS; GENUS; GRAM NEGATIVE BACTERIUM; LOW TEMPERATURE; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RNA FINGERPRINTING; RNA SEQUENCE; SPECIES DIFFERENCE; THERMOMONAS BREVIS; THERMOMONAS FUSCA;

BIOFILMS; DNA, BACTERIAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYESTERS; POLYMERASE CHAIN REACTION; SPECIES SPECIFICITY; XANTHOMONADACEAE;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; THERMOMONAS; THERMOMONAS BREVIS; THERMOMONAS FUSCA;

EID: 0344897070     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02684-0     Document Type: Article

References (24)

1. Alves, M. P., Rainey, F. A., Nobre, M. F. & da Costa, M. S. (2003). Thermomonas hydrothermalis sp. nov., a new slightly thermophilic γ-proteobacterium isolated from a hot spring in central Portugal. Syst Appl Microbiol 26, 70-75.
2. Boley, A., Müller, W.-R. & Haider, G. (2000). Biodegradable polymers as solid substrate and biofilm carrier for denitrification in recirculated aquaculture systems. Aquac Eng 22, 75-85.
3. Boley, A., Mergaert, J., Müller, C., Lebrenz, H., Cnockaert, M. C., Müller, W. R. & Swings, J. (2003). Denitrification and pesticide elimination in drinking water treatment with the biodegradable polymer poly-E-caprolactone (PCL). Acta Hydrochim Hydrobiol 31, 1-9.
4. Buchholz-Cleven, B. E., Rattunde, B. & Straub, K. L. (1997). Screening for genetic diversity of isolates of anaerobic Fe(II)-oxidizing bacteria using DGGE and whole-cell hybridization. Syst Appl Microbiol 20, 301-309.
5. Busse, H.-J., Kämpfer, P., Moore, E. R. B. & 7 other authors (2002). Thermomonas haemolytica gen. nov., sp. nov., a γ-proteobacterium from kaolin slurry. Int J Syst Evol Microbiol 52, 473-483.
6. Heimbrook, M. E., Wang, W. L. & Campbell, G. (1989). Staining bacterial flagella easily. J Clin Microbiol 27, 2612-2615.
7. Logan, N. A., Lebbe, L., Hoste, B. & 7 other authors (2000). Aerobic endospore-forming bacteria from geothermal environments in northern Victoria Land, Antarctica, and Candlemas Island, South Sandwich archipelago, with the proposal of Bacillus fumarioli sp. nov. Int J Syst Evol Microbiol 50, 1741-1753.
8. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
9. Mergaert, J. & Swings, J. (1996). Biodiversity of microorganisms that degrade bacterial and synthetic polyesters. J Ind Microbiol 17, 463-469.
10. Mergaert, J., Verdonck, L. & Kersters, K. (1993). Transfer of Erwinia ananas (synonym, Erwinia uredovora) and Erwinia stewartii to the genus Pantoea emend. as Pantoea ananas (Serrano 1928) comb. nov. and Pantoea stewartii (Smith 1898) comb. nov., respectively, and description of Pantoea stewartii subsp. indologenes subsp. nov. Int J Syst Bacteriol 43, 162-173.
11. Mergaert, J., Ruffieux, K., Bourban, C., Storms, V., Wagemans, W., Wintermantel, E. & Swings, J. (2000). In vitro biodegradation of polyester-based plastic materials by selected bacterial cultures. J Polym Environ 8, 17-27.
12. Mergaert, J., Verhelst, A., Cnockaert, M. C., Tan, T.-L. & Swings, J. (2001a). Characterization of facultative oligotrophic bacteria from polar seas by analysis of their fatty acids and 16S rDNA sequences. Syst Appl Microbiol 24, 98-107.
13. Mergaert, J., Boley, A., Cnockaert, M. C., Müller, W.-R. & Swings, J. (2001b). Identity and potential functions of heterotrophic bacterial isolates from a continuous-upflow fixed-bed reactor for denitrification of drinking water with bacterial polyester as source of carbon and electron donor. Syst Appl Microbiol 24, 303-310.
14. Mergaert, J., Cnockaert, M. C. & Swings, J. (2002). Fulvimonas soli gen. nov., sp. nov., a γ-proteobacterium isolated from soil after enrichment on acetylated starch plastic. Int J Syst Evol Microbiol 52, 1285-1289.
15. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
16. Müller, W.-R., Heinemann, A., Schäfer, C., Wurmthaler, J. & Reutter, T. (1992). Aspects of PHA (poly-β-hydroxy-butyric-acid) as H-donator for denitrification in water treatment processes. Water Supply 1992, 79-90.
17. Pitcher, D. G., Saunders, N. A. & Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8, 151-156.
18. Rademaker, J. L. W. & de Bruijn, F. J. (1997). Characterization and classification of microbes by rep-PCR genomic fingerprintirig and computer assisted pattern analysis. In DNA Markers: Protocols, Applications and Overviews, pp. 151-171. Edited by G. Caetano-Anollés & P. M. Gresshoff. New York: Wiley.
19. Rademaker, J. L. W., Hoste, B., Louws, F. J., Kersters, K., Swings, J., Vauterin, L., Vauterin, P. & de Bruijn, F. J. (2000). Comparison of AFLP and rep-PCR genomic fingerprinting with DNA-DNA homology studies: Xanthomonas as a model system. Int J Syst Evol Microbiol 50, 665-677.
20. Saitou, N. & Nei, M. (1987). The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
21. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
22. Versalovic, J., Koeuth, T. & Lupski, J. R. (1991). Distribution of repetitive DNA sequences in eubacteria and application to finger-printing of bacterial genomes. Nucleic Acids Res 19, 6823-6831.
23. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
24. Willems, A., Doignon-Bourcier, F., Goris, J., Coopman, R., de Lajudie, P., De Vos, P. & Gillis, M. (2001). DNA-DNA hybridization study of Bradyrhizobium strains. Int J Syst Evol Microbiol 51, 1315-1322.