-
1
-
-
84855889658
-
From the regulation of peptidoglycan synthesis to bacterial growth and morphology
-
Typas A, Banzhaf M, Gross CA, Vollmer W. 2012. From the regulation of peptidoglycan synthesis to bacterial growth and morphology. Nat. Rev. Microbiol. 10:123-136. http://dx.doi.org/10.1038/nrmicro2677.
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 123-136
-
-
Typas, A.1
Banzhaf, M.2
Gross, C.A.3
Vollmer, W.4
-
2
-
-
50049104157
-
Murein (peptidoglycan) structure, architecture and biosynthesis in Escherichia coli
-
Vollmer W, Bertsche U. 2008. Murein (peptidoglycan) structure, architecture and biosynthesis in Escherichia coli. Biochim. Biophys. Acta 1778: 1714-1734. http://dx.doi.org/10.1016/j.bbamem.2007.06.007.
-
(2008)
Biochim. Biophys. Acta
, vol.1778
, pp. 1714-1734
-
-
Vollmer, W.1
Bertsche, U.2
-
4
-
-
39149083088
-
Cytoplasmic steps of peptidoglycan biosynthesis
-
Barreteau H, Kovač A, Boniface A, Sova M, Gobec S, Blanot D. 2008. Cytoplasmic steps of peptidoglycan biosynthesis. FEMS Microbiol. Rev. 32:168-207. http://dx.doi.org/10.1111/j.1574-6976.2008.00104.x.
-
(2008)
FEMS Microbiol. Rev.
, vol.32
, pp. 168-207
-
-
Barreteau, H.1
Kovač, A.2
Boniface, A.3
Sova, M.4
Gobec, S.5
Blanot, D.6
-
7
-
-
84861892432
-
Structural perspective of peptidoglycan biosynthesis and assembly
-
Lovering AL, Safadi SS, Strynadka NCJ. 2012. Structural perspective of peptidoglycan biosynthesis and assembly. Annu. Rev. Biochem. 81:451-478. http://dx.doi.org/10.1146/annurev-biochem-061809-112742.
-
(2012)
Annu. Rev. Biochem.
, vol.81
, pp. 451-478
-
-
Lovering, A.L.1
Safadi, S.S.2
Strynadka, N.C.J.3
-
8
-
-
73449119238
-
Flipping lipids: why an' what's the reason for? ACS Chem
-
Sanyal S, Menon AK. 2009. Flipping lipids: why an' what's the reason for? ACS Chem. Biol. 4:895-909. http://dx.doi.org/10.1021/cb900163d.
-
(2009)
Biol.
, vol.4
, pp. 895-909
-
-
Sanyal, S.1
Menon, A.K.2
-
9
-
-
84904097466
-
MurJ is the flippase of lipid-linked precursors for peptidoglycan biogenesis
-
Sham L-T, Butler EK, Lebar MD, Kahne D, Bernhardt TG, Ruiz N. 2014. MurJ is the flippase of lipid-linked precursors for peptidoglycan biogenesis. Science 345:220-222. http://dx.doi.org/10.1126/science.1254522.
-
(2014)
Science
, vol.345
, pp. 220-222
-
-
Sham, L.-T.1
Butler, E.K.2
Lebar, M.D.3
Kahne, D.4
Bernhardt, T.G.5
Ruiz, N.6
-
10
-
-
55749104427
-
Involvement of an essential gene, mviN, in murein synthesis in Escherichia coli
-
Inoue A, Murata Y, Takahashi H, Tsuji N, Fujisaki S, Kato J-I. 2008. Involvement of an essential gene, mviN, in murein synthesis in Escherichia coli. J. Bacteriol. 190:7298-7301. http://dx.doi.org/10.1128/JB.00551-08.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 7298-7301
-
-
Inoue, A.1
Murata, Y.2
Takahashi, H.3
Tsuji, N.4
Fujisaki, S.5
Kato, J.-I.6
-
11
-
-
55749095406
-
Bioinformatics identification of MurJ (MviN) as the peptidoglycan lipid II flippase in Escherichia coli
-
Ruiz N. 2008. Bioinformatics identification of MurJ (MviN) as the peptidoglycan lipid II flippase in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 105:15553-15557. http://dx.doi.org/10.1073/pnas.0808352105.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 15553-15557
-
-
Ruiz, N.1
-
12
-
-
84899816263
-
A Burkholderia cenocepacia MurJ (MviN) homolog is essential for cell wall peptidoglycan synthesis and bacterial viability
-
Mohamed YF, Valvano MA. 2014. A Burkholderia cenocepacia MurJ (MviN) homolog is essential for cell wall peptidoglycan synthesis and bacterial viability. Glycobiology 24:564-576. http://dx.doi.org/10.1093/glycob/cwu025.
-
(2014)
Glycobiology
, vol.24
, pp. 564-576
-
-
Mohamed, Y.F.1
Valvano, M.A.2
-
13
-
-
0037337313
-
The multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) exporter superfamily
-
Hvorup RN, Winnen B, Chang AB, Jiang Y, Zhou X-F, Saier MH. 2003. The multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) exporter superfamily. Eur. J. Biochem. 270:799-813. http://dx.doi.org/10.1046/j.1432-1033.2003.03418.x.
-
(2003)
Eur. J. Biochem.
, vol.270
, pp. 799-813
-
-
Hvorup, R.N.1
Winnen, B.2
Chang, A.B.3
Jiang, Y.4
Zhou, X.-F.5
Saier, M.H.6
-
14
-
-
84885459056
-
Structurefunction analysis of MurJ reveals a solvent-exposed cavity containing residues essential for peptidoglycan biogenesis in Escherichia coli
-
Butler EK, Davis RM, Bari V, Nicholson PA, Ruiz N. 2013. Structurefunction analysis of MurJ reveals a solvent-exposed cavity containing residues essential for peptidoglycan biogenesis in Escherichia coli. J. Bacteriol. 195:4639-4649. http://dx.doi.org/10.1128/JB.00731-13.
-
(2013)
J. Bacteriol.
, vol.195
, pp. 4639-4649
-
-
Butler, E.K.1
Davis, R.M.2
Bari, V.3
Nicholson, P.A.4
Ruiz, N.5
-
15
-
-
64649085938
-
Multidrug efflux transporters in the MATE family
-
Kuroda T, Tsuchiya T. 2009. Multidrug efflux transporters in the MATE family. Biochim. Biophys. Acta 1794:763-768. http://dx.doi.org/10.1016/j.bbapap.2008.11.012.
-
(2009)
Biochim. Biophys. Acta
, vol.1794
, pp. 763-768
-
-
Kuroda, T.1
Tsuchiya, T.2
-
16
-
-
77958596325
-
Structure of a cation-bound multidrug and toxic compound extrusion transporter
-
He X, Szewczyk P, Karyakin A, Evin M, Hong W-X, Zhang Q, Chang G. 2010. Structure of a cation-bound multidrug and toxic compound extrusion transporter. Nature 467:991-994. http://dx.doi.org/10.1038/nature09408.
-
(2010)
Nature
, vol.467
, pp. 991-994
-
-
He, X.1
Szewczyk, P.2
Karyakin, A.3
Evin, M.4
Hong, W.-X.5
Zhang, Q.6
Chang, G.7
-
17
-
-
84887491471
-
Structural insights into H+-coupled multidrug extrusion by a MATE transporter
-
Lu M, Radchenko M, Symersky J, Nie R, Guo Y. 2013. Structural insights into H+-coupled multidrug extrusion by a MATE transporter. Nat. Struct. Mol. Biol. 20:1310-1317. http://dx.doi.org/10.1038/nsmb.2687.
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 1310-1317
-
-
Lu, M.1
Radchenko, M.2
Symersky, J.3
Nie, R.4
Guo, Y.5
-
18
-
-
84873431135
-
Structures of a Na+-coupled, substrate-bound MATE multidrug transporter
-
Lu M, Symersky J, Radchenko M, Koide A, Guo Y, Nie R, Koide S. 2013. Structures of a Na+-coupled, substrate-bound MATE multidrug transporter. Proc. Natl. Acad. Sci. U. S. A. 110:2099-2104. http://dx.doi.org/10.1073/pnas.1219901110.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 2099-2104
-
-
Lu, M.1
Symersky, J.2
Radchenko, M.3
Koide, A.4
Guo, Y.5
Nie, R.6
Koide, S.7
-
19
-
-
84876297961
-
Structural basis for the drug extrusion mechanism by a MATE multidrug transporter
-
Tanaka Y, Hipolito CJ, Maturana AD, Ito K, Kuroda T, Higuchi T, Katoh T, Kato HE, Hattori M, Kumazaki K, Tsukazaki T, Ishitani R, Suga H, Nureki O. 2013. Structural basis for the drug extrusion mechanism by a MATE multidrug transporter. Nature 496:247-251. http://dx.doi.org/10.1038/nature12014.
-
(2013)
Nature
, vol.496
, pp. 247-251
-
-
Tanaka, Y.1
Hipolito, C.J.2
Maturana, A.D.3
Ito, K.4
Kuroda, T.5
Higuchi, T.6
Katoh, T.7
Kato, H.E.8
Hattori, M.9
Kumazaki, K.10
Tsukazaki, T.11
Ishitani, R.12
Suga, H.13
Nureki, O.14
-
20
-
-
84875910878
-
Wzx flippase-mediated membrane translocation of sugar polymer precursors in bacteria
-
Islam ST, Lam JS. 2013. Wzx flippase-mediated membrane translocation of sugar polymer precursors in bacteria. Environ. Microbiol. 15:1001-1015. http://dx.doi.org/10.1111/j.1462-2920.2012.02890.x.
-
(2013)
Environ. Microbiol.
, vol.15
, pp. 1001-1015
-
-
Islam, S.T.1
Lam, J.S.2
-
21
-
-
80054078476
-
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
-
Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, Lopez R, McWilliam H, Remmert M, Soding J, Thompson JD, Higgins DG. 2011. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol. Syst. Biol. 7:539. http://dx.doi.org/10.1038/msb.2011.75.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 539
-
-
Sievers, F.1
Wilm, A.2
Dineen, D.3
Gibson, T.J.4
Karplus, K.5
Li, W.6
Lopez, R.7
McWilliam, H.8
Remmert, M.9
Soding, J.10
Thompson, J.D.11
Higgins, D.G.12
-
22
-
-
67749139787
-
Streptococcus pyogenes YtgP (Spy_0390) complements Escherichia coli strains depleted of the putative peptidoglycan flippase, MurJ
-
Ruiz N. 2009. Streptococcus pyogenes YtgP (Spy_0390) complements Escherichia coli strains depleted of the putative peptidoglycan flippase, MurJ. Antimicrob. Agents Chemother. 53:3604-3605. http://dx.doi.org/10.1128/AAC.00578-09.
-
(2009)
Antimicrob. Agents Chemother.
, vol.53
, pp. 3604-3605
-
-
Ruiz, N.1
-
23
-
-
44449176988
-
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli
-
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ. 2008. Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 105:5537-5542. http://dx.doi.org/10.1073/pnas.0801196105.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 5537-5542
-
-
Ruiz, N.1
Gronenberg, L.S.2
Kahne, D.3
Silhavy, T.J.4
-
24
-
-
0017129243
-
Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu
-
Casadaban MJ. 1976. Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu. J. Mol. Biol. 104:541-555. http://dx.doi.org/10.1016/0022-2836(76)90119-4.
-
(1976)
J. Mol. Biol.
, vol.104
, pp. 541-555
-
-
Casadaban, M.J.1
-
26
-
-
33646568438
-
Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research
-
Kitagawa M, Ara T, Arifuzzaman M, Ioka-Nakamichi T, Inamoto E, Toyonaga H, Mori H. 2005. Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12:291-299. http://dx.doi.org/10.1093/dnares/dsi012.
-
(2005)
DNA Res.
, vol.12
, pp. 291-299
-
-
Kitagawa, M.1
Ara, T.2
Arifuzzaman, M.3
Ioka-Nakamichi, T.4
Inamoto, E.5
Toyonaga, H.6
Mori, H.7
-
27
-
-
77954065271
-
I-TASSER: a unified platform for automated protein structure and function prediction
-
Roy A, Kucukural A, Zhang Y. 2010. I-TASSER: a unified platform for automated protein structure and function prediction. Nat. Protoc. 5:725-738. http://dx.doi.org/10.1038/nprot.2010.5.
-
(2010)
Nat. Protoc.
, vol.5
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
28
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov IN, Bourne PE. 1998. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng. 11:739-747. http://dx.doi.org/10.1093/protein/11.9.739.
-
(1998)
Protein Eng.
, vol.11
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
29
-
-
84865157678
-
A cationic lumen in the Wzx flippase mediates anionic O-antigen subunit translocation in Pseudomonas aeruginosa PAO1
-
Islam ST, Fieldhouse RJ, Anderson EM, Taylor VL, Keates RAB, Ford RC, Lam JS. 2012. A cationic lumen in the Wzx flippase mediates anionic O-antigen subunit translocation in Pseudomonas aeruginosa PAO1. Mol. Microbiol. 84:1165-1176. http://dx.doi.org/10.1111/j.1365-2958.2012.08084.x.
-
(2012)
Mol. Microbiol.
, vol.84
, pp. 1165-1176
-
-
Islam, S.T.1
Fieldhouse, R.J.2
Anderson, E.M.3
Taylor, V.L.4
Keates, R.A.B.5
Ford, R.C.6
Lam, J.S.7
-
30
-
-
0032540320
-
The proton motive force, acting on acidic residues, promotes translocation of amino-terminal domains of membrane proteins when the hydrophobicity of the translocation signal is low
-
Delgado-Partin VM, Dalbey RE. 1998. The proton motive force, acting on acidic residues, promotes translocation of amino-terminal domains of membrane proteins when the hydrophobicity of the translocation signal is low. J. Biol. Chem. 273:9927-9934. http://dx.doi.org/10.1074/jbc.273.16.9927.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 9927-9934
-
-
Delgado-Partin, V.M.1
Dalbey, R.E.2
-
31
-
-
0030953689
-
Negatively charged amino acid residues play an active role in orienting the Sec-independent Pf3 coat protein in the Escherichia coli inner membrane
-
Kiefer D, Hu X, Dalbey R, Kuhn A. 1997. Negatively charged amino acid residues play an active role in orienting the Sec-independent Pf3 coat protein in the Escherichia coli inner membrane. EMBO J. 16:2197-2204. http://dx.doi.org/10.1093/emboj/16.9.2197.
-
(1997)
EMBO J.
, vol.16
, pp. 2197-2204
-
-
Kiefer, D.1
Hu, X.2
Dalbey, R.3
Kuhn, A.4
-
32
-
-
0033584852
-
A single negatively charged residue affects the orientation of a membrane protein in the inner membrane of Escherichia coli only when it is located adjacent to a transmembrane domain
-
Rutz C, Rosenthal W, Schülein R. 1999. A single negatively charged residue affects the orientation of a membrane protein in the inner membrane of Escherichia coli only when it is located adjacent to a transmembrane domain. J. Biol. Chem. 274:33757-33763. http://dx.doi.org/10.1074/jbc.274.47.33757.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 33757-33763
-
-
Rutz, C.1
Rosenthal, W.2
Schülein, R.3
-
33
-
-
84875195995
-
Charge composition features of model single-span membrane proteins that determine selection of YidC and SecYEG translocase pathways in Escherichia coli
-
Zhu L, Wasey A, White SH, Dalbey RE. 2013. Charge composition features of model single-span membrane proteins that determine selection of YidC and SecYEG translocase pathways in Escherichia coli. J. Biol. Chem. 288:7704-7716. http://dx.doi.org/10.1074/jbc.M112.429431.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 7704-7716
-
-
Zhu, L.1
Wasey, A.2
White, S.H.3
Dalbey, R.E.4
-
34
-
-
39149110299
-
Peptidoglycan structure and architecture
-
Vollmer W, Blanot D, De Pedro MA. 2008. Peptidoglycan structure and architecture. FEMS Microbiol. Rev. 32:149-167. http://dx.doi.org/10.1111/j.1574-6976.2007.00094.x.
-
(2008)
FEMS Microbiol. Rev.
, vol.32
, pp. 149-167
-
-
Vollmer, W.1
Blanot, D.2
De Pedro, M.A.3
-
35
-
-
69049091879
-
Chemical genetic identification of peptidoglycan inhibitors potentiating carbapenem activity against methicillin-resistant Staphylococcus aureus
-
Huber J, Donald RGK, Lee SH, Jarantow LW, Salvatore MJ, Meng X, Painter R, Onishi RH, Occi J, Dorso K, Young K, Park YW, Skwish S, Szymonifka MJ, Waddell TS, Miesel L, Phillips JW, Roemer T. 2009. Chemical genetic identification of peptidoglycan inhibitors potentiating carbapenem activity against methicillin-resistant Staphylococcus aureus. Chem. Biol. 16:837-848. http://dx.doi.org/10.1016/j.chembiol.2009.05.012.
-
(2009)
Chem. Biol.
, vol.16
, pp. 837-848
-
-
Huber, J.1
Donald, R.G.K.2
Lee, S.H.3
Jarantow, L.W.4
Salvatore, M.J.5
Meng, X.6
Painter, R.7
Onishi, R.H.8
Occi, J.9
Dorso, K.10
Young, K.11
Park, Y.W.12
Skwish, S.13
Szymonifka, M.J.14
Waddell, T.S.15
Miesel, L.16
Phillips, J.W.17
Roemer, T.18
-
36
-
-
79955654072
-
Arginine in membranes: the connection between molecular dynamics simulations and translocon-mediated insertion experiments
-
Schow E, Freites JA, Cheng P, Bernsel A, von Heijne G, White S, Tobias D. 2011. Arginine in membranes: the connection between molecular dynamics simulations and translocon-mediated insertion experiments. J. Membrane Biol. 239:35-48. http://dx.doi.org/10.1007/s00232-010-9330-x.
-
(2011)
J. Membrane Biol.
, vol.239
, pp. 35-48
-
-
Schow, E.1
Freites, J.A.2
Cheng, P.3
Bernsel, A.4
von Heijne, G.5
White, S.6
Tobias, D.7
-
37
-
-
84860151584
-
Crystal structure of Staphylococcus aureus transglycosylase in complex with a lipid II analog and elucidation of peptidoglycan synthesis mechanism
-
Huang C-Y, Shih H-W, Lin L-Y, Tien Y-W, Cheng T-JR, Cheng W-C, Wong C-H, Ma C. 2012. Crystal structure of Staphylococcus aureus transglycosylase in complex with a lipid II analog and elucidation of peptidoglycan synthesis mechanism. Proc. Natl. Acad. Sci. U. S. A. 109:6496-6501. http://dx.doi.org/10.1073/pnas.1203900109.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 6496-6501
-
-
Huang, C.-Y.1
Shih, H.-W.2
Lin, L.-Y.3
Tien, Y.-W.4
Cheng, T.-J.R.5
Cheng, W.-C.6
Wong, C.-H.7
Ma, C.8
-
38
-
-
67049087759
-
Crystal structure of the membrane-bound bifunctional transglycosylase PBP1b from Escherichia coli
-
Sung M-T, Lai Y-T, Huang C-Y, Chou L-Y, Shih H-W, Cheng W-C, Wong C-H, Ma C. 2009. Crystal structure of the membrane-bound bifunctional transglycosylase PBP1b from Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 106:8824-8829. http://dx.doi.org/10.1073/pnas.0904030106.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 8824-8829
-
-
Sung, M.-T.1
Lai, Y.-T.2
Huang, C.-Y.3
Chou, L.-Y.4
Shih, H.-W.5
Cheng, W.-C.6
Wong, C.-H.7
Ma, C.8
-
39
-
-
57649134967
-
Importance of the conserved residues in the peptidoglycan glycosyltransferase module of the class A penicillin-binding protein 1b of Escherichia coli
-
Terrak M, Sauvage E, Derouaux A, Dehareng D, Bouhss A, Breukink E, Jeanjean S, Nguyen-Distèche M. 2008. Importance of the conserved residues in the peptidoglycan glycosyltransferase module of the class A penicillin-binding protein 1b of Escherichia coli. J. Biol. Chem. 283: 28464-28470. http://dx.doi.org/10.1074/jbc.M803223200.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 28464-28470
-
-
Terrak, M.1
Sauvage, E.2
Derouaux, A.3
Dehareng, D.4
Bouhss, A.5
Breukink, E.6
Jeanjean, S.7
Nguyen-Distèche, M.8
-
40
-
-
34248400401
-
Crystal structure of a peptidoglycan glycosyltransferase suggests a model for processive glycan chain synthesis
-
Yuan Y, Barrett D, Zhang Y, Kahne D, Sliz P, Walker S. 2007. Crystal structure of a peptidoglycan glycosyltransferase suggests a model for processive glycan chain synthesis. Proc. Natl. Acad. Sci. U. S. A. 104:5348-5353. http://dx.doi.org/10.1073/pnas.0701160104.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 5348-5353
-
-
Yuan, Y.1
Barrett, D.2
Zhang, Y.3
Kahne, D.4
Sliz, P.5
Walker, S.6
-
41
-
-
84887168855
-
Proton-dependent gating and proton uptake by Wzx support O-antigen-subunit antiport across the bacterial inner membrane
-
e00678-13
-
Islam ST, Eckford PDW, Jones ML, Nugent T, Bear CE, Vogel C, Lam JS. 2013. Proton-dependent gating and proton uptake by Wzx support O-antigen-subunit antiport across the bacterial inner membrane. mBio 4:e00678-13. http://dx.doi.org/10.1128/mBio.00678-13.
-
(2013)
mBio
, vol.4
-
-
Islam, S.T.1
Eckford, P.D.W.2
Jones, M.L.3
Nugent, T.4
Bear, C.E.5
Vogel, C.6
Lam, J.S.7
|