Gannet: A batch-processing tool for the quantitative analysis of gamma-aminobutyric acid-edited MR spectroscopy spectra

Journal of Magnetic Resonance Imaging

Volumn 40, Issue 6, 2014, Pages 1445-1452

  Edden, Richard A E ^a,b   Puts, Nicolaas A J ^a,b   Harris, Ashley D ^a,b   Barker, Peter B ^a,b   Evans, C John ^c,d  

^a JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b KENNEDY KRIEGER INSTITUTE   (United States)

^c CARDIFF UNIVERSITY   (United Kingdom)

^d CARDIFF UNIVERSITY   (United Kingdom)

Author keywords

Edited MRS; Editing; GABA; Magnetic resonance spectroscopy; MEGA PRESS; Quantification

Indexed keywords

4 AMINOBUTYRIC ACID; CREATINE; WATER;

ADULT; ARTICLE; BRAIN REGION; COMPARATIVE STUDY; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; HUMAN; IMAGE ANALYSIS; IMAGING SOFTWARE; NORMAL HUMAN; NUCLEAR MAGNETIC RESONANCE SCANNER; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; OCCIPITAL CORTEX; PREFRONTAL CORTEX; QUANTITATIVE ANALYSIS; ALGORITHM; BRAIN; COMPUTER LANGUAGE; COMPUTER PROGRAM; FEMALE; MALE; MATHEMATICAL COMPUTING; METABOLISM; PROCEDURES; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; STATISTICAL ANALYSIS; TISSUE DISTRIBUTION;

ADULT; ALGORITHMS; BRAIN; DATA INTERPRETATION, STATISTICAL; FEMALE; GAMMA-AMINOBUTYRIC ACID; HUMANS; MAGNETIC RESONANCE SPECTROSCOPY; MALE; NUMERICAL ANALYSIS, COMPUTER-ASSISTED; PROGRAMMING LANGUAGES; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SOFTWARE; TISSUE DISTRIBUTION;

EID: 84910005467     PISSN: 10531807     EISSN: 15222586     Source Type: Journal    
DOI: 10.1002/jmri.24478     Document Type: Article

References (39)

1. Mullins PG, McGonigle DJ, O'Gorman RL, et al. Current practice in the use of MEGA-PRESS spectroscopy for the detection of GABA. Neuroimage 2013. Epub doi:10.1016/j.neuroimage.2012.12.004.
2. Puts NA, Edden RA. In vivo magnetic resonance spectroscopy of GABA: a methodological review. Prog Nucl Magn Reson Spectrosc 2012;60:29-41.
3. Muthukumaraswamy SD, Evans CJ, Edden RA, Wise RG, Singh KD. Individual variability in the shape and amplitude of the BOLD-HRF correlates with endogenous GABAergic inhibition. Hum Brain Mapp 2012;33:455-465.
4. Puts NA, Edden RA, Evans CJ, McGlone F, McGonigle DJ. Regionally specific human GABA concentration correlates with tactile discrimination thresholds. J Neurosci 2011;31:16556-16560.
5. Stagg CJ, Bachtiar V, Johansen-Berg H. The role of GABA in human motor learning. Curr Biol 2011;21:480-484.
6. Foerster BR, Petrou M, Edden RA, et al. Reduced insular gammaaminobutyric acid in fibromyalgia. Arthritis Rheum 2012;64:579-583.
7. Petroff OA, Rothman DL, Behar KL, Mattson RH. Low brain GABA level is associated with poor seizure control. Ann Neurol 1996;40:908-911.
8. Simister RJ, McLean MA, Barker GJ, Duncan JS. Proton MRS reveals frontal lobe metabolite abnormalities in idiopathic generalized epilepsy. Neurology 2003;61:897-902.
9. Sanacora G, Mason GF, Rothman DL, et al. Increased cortical GABA concentrations in depressed patients receiving ECT. Am J Psychiatry 2003;160:577-579.
10. Sanacora G, Mason GF, Rothman DL, Krystal JH. Increased occipital cortex GABA concentrations in depressed patients after therapy with selective serotonin reuptake inhibitors. Am J Psychiatry 2002;159:663-665.
11. Tayoshi S, Nakataki M, Sumitani S, et al. GABA concentration in schizophrenia patients and the effects of antipsychotic medication: a proton magnetic resonance spectroscopy study. Schizophr Res 2010;117:83-91.
12. Yoon JH, Maddock RJ, Rokem A, et al. GABA concentration is reduced in visual cortex in schizophrenia and correlates with orientation-specific surround suppression. J Neurosci 2010;30:3777-3781.
13. Ongur D, Prescot AP, McCarthy J, Cohen BM, Renshaw PF. Elevated gamma-aminobutyric Acid levels in chronic schizophrenia. Biol Psychiatry 2010;68:667-670.
14. Kegeles LS, Mao X, Stanford AD, et al. Elevated prefrontal cortex gamma-aminobutyric acid and glutamate-glutamine levels in schizophrenia measured in vivo with proton magnetic resonance spectroscopy. Arch Gen Psychiatry 2012;69:449-459.
15. Simpson HB, Shungu DC, Bender J Jr, et al. Investigation of cortical glutamate-glutamine and gamma-aminobutyric acid in obsessive-compulsive disorder by proton magnetic resonance spectroscopy. Neuropsychopharmacology 2012;37:2684-2692.
16. Edden RA, Crocetti D, Zhu H, Gilbert DL, Mostofsky SH. Reduced GABA concentration in attention-deficit/hyperactivity disorder. Arch Gen Psychiatry 2012;69:750-753.
17. Gaetz W, Bloy L, Wang DJ, et al. GABA estimation in the brains of children on the autism spectrum: measurement precision and regional cortical variation. Neuroimage 2013. Epub doi:10.1016/j.neuroimage.2013.1005.1068.
18. Rojas DC, Singel D, Steinmetz S, Hepburn S, Brown MS. Decreased left perisylvian GABA concentration in children with autism and unaffected siblings. Neuroimage 2013. Epub doi: 10.1016/j.neuroimage.2013.01.045.
19. Kaiser LG, Young K, Meyerhoff DJ, Mueller SG, Matson GB. A detailed analysis of localized J-difference GABA editing: theoretical and experimental study at 4 T. NMR Biomed 2008;21:22-32.
20. Rothman DL, Petroff OA, Behar KL, Mattson RH. Localized 1H NMR measurements of gamma-aminobutyric acid in human brain in vivo. Proc Natl Acad Sci U S A 1993;90:5662-5666.
21. Mescher M, Merkle H, Kirsch J, Garwood M, Gruetter R. Simultaneous in vivo spectral editing and water suppression. NMR Biomed 1998;11:266-272.
22. Edden RA, Puts NA, Barker PB. Macromolecule-suppressed GABA-edited magnetic resonance spectroscopy at 3T. Magn Reson Med 2012;68:657-661.
23. Henry P-G, Dautry C, Hantraye P, Bloch G. Brain GABA editing without macromolecule contamination. Magn Reson Med 2001;45:517-520.
24. Provencher SW. Automatic quantitation of localized in vivo 1H spectra with LCModel. NMR Biomed 2001;14:260-264.
25. Naressi A, Couturier C, Devos JM, et al. Java-based graphical user interface for the MRUI quantitation package. MAGMA 2001;12:141-152.
26. Wilson M, Reynolds G, Kauppinen RA, Arvanitis TN, Peet AC. A constrained least-squares approach to the automated quantitation of in vivo (1) H magnetic resonance spectroscopy data. Magn Reson Med 2011;65:1-12.
27. Hardy CJ, Bottomley PA, Rohling KW, Roemer PB. An NMR phased array for human cardiac 31P spectroscopy. Magn Reson Med 1992;28:54-64.
28. Waddell KW, Avison MJ, Joers JM, Gore JC. A practical guide to robust detection of GABA in human brain by J-difference spectroscopy at 3 T using a standard volume coil. Magn Reson Imaging 2007;25:1032-1038.
29. Evans CJ, Puts NA, Robson SE, et al. Subtraction artifacts and frequency (Mis-) alignment in J-difference GABA editing. J Magn Reson Imaging 2013. Epub doi:10.1002/jmri.23923.
30. Geramita M, van der Veen JW, Barnett AS, et al. Reproducibility of prefrontal gamma-aminobutyric acid measurements with J-edited spectroscopy. NMR Biomed 2011;24:1089-1098.
31. Gabbay V, Mao X, Stanford AD, et al. Anterior cingulate cortex gamino butyric acid in depressed adolescents: relationship to anhedonia. Arch Gen Psychiatry 2012;69:139-149.
32. Stagg CJ, Wylezinska M, Matthews PM, et al. Neurochemical effects of theta burst stimulation as assessed by magnetic resonance spectroscopy. J Neurophysiol 2009;101:2872-2877.
33. Petrou M, Pop-Busui R, Foerster BR, et al. Altered excitationinhibition balance in the brain of patients with diabetic neuropathy. Acad Radiol 2012;19:607-612.
34. Violante IR, Ribeiro MJ, Edden RA, et al. GABA deficit in the visual cortex of patients with neurofibromatosis type 1: genotypephenotype correlations and functional impact. Brain 2013;136(Pt 3):918-925.
35. Near J, Evans CJ, Puts NA, Barker PB, Edden RA. J-difference editing of gamma-aminobutyric acid (GABA): simulated and experimental multiplet patterns. Magn Reson Med 2012. doi 10.1002/mrm.24572.
36. Zhu H, Edden RA, Ouwerkerk R, Barker PB. High resolution spectroscopic imaging of GABA at 3 Tesla. Magn Reson Med 2011;65:603-609.
37. Wood JH, Glaeser BS, Hare TA, Sode J, Brooks BR, Van Buren JM. Cerebrospinal fluid GABA reductions in seizure patients evoked by cerebellar surface stimulation. J Neurosurg 1977;47:582-589.
38. Kreis R, Ernst T, Ross BD. Absolute quantitation of water and metabolites in the human brain. II. Metabolite concentrations. J Magn Reson B 1993;102:9-19.
39. Choi C, Bhardwaj PP, Kalra S, et al. Measurement of GABA and contaminants in gray and white matter in human brain in vivo. Magn Reson Med 2007;58:27-33.