메뉴 건너뛰기




Volumn 60, Issue 2-3, 2014, Pages 91-98

C4/H4 selective, non-uniformly sampled 4D HC(P)CH experiment for sequential assignments of 13C-labeled RNAs

Author keywords

Four dimensional NMR; HCP; Non uniform sampling; RNA resonance assignment; Selective pulses

Indexed keywords

CARBOHYDRATE DERIVATIVE; CARBON 13; NUCLEIC ACID; NUCLEOTIDE; RNA; CARBON; HYDROGEN; PHOSPHORUS;

EID: 84909987634     PISSN: 09252738     EISSN: 15735001     Source Type: Journal    
DOI: 10.1007/s10858-014-9861-z     Document Type: Article
Times cited : (6)

References (31)
  • 1
    • 84885910600 scopus 로고    scopus 로고
    • Automated and assisted RNA resonance assignment using NMR chemical shift statistics
    • Aeschbacher T, Schmidt E, Blatter M, Maris C, Duss O, Allain FH-T, Güntert P, Schubert M (2013) Automated and assisted RNA resonance assignment using NMR chemical shift statistics. Nucleic Acids Res gkt665
    • (2013) Nucleic Acids Res gkt665
    • Aeschbacher, T.S.1
  • 3
    • 65249110487 scopus 로고    scopus 로고
    • The dawn of the RNA World: Toward functional complexity through ligation of random RNA oligomers
    • (New York, NY)
    • Briones C, Stich M, Manrubia SC (2009) The dawn of the RNA World: toward functional complexity through ligation of random RNA oligomers. RNA 15:743-749 (New York, NY)
    • (2009) RNA , vol.15 , pp. 743-749
    • Briones, C.1    Stich, M.2    Manrubia, S.C.3
  • 4
    • 78649857180 scopus 로고    scopus 로고
    • NMR structure of the let-7 miRNA interacting with the site LCS1 of lin-41 mRNA from Caenorhabditis elegans
    • Cevec M, Thibaudeau C, Plavec J (2010) NMR structure of the let-7 miRNA interacting with the site LCS1 of lin-41 mRNA from Caenorhabditis elegans. Nucleic Acids Res 38:7814-7821
    • (2010) Nucleic Acids Res , vol.38 , pp. 7814-7821
    • Cevec, M.1    Thibaudeau, C.2    Plavec, J.3
  • 5
    • 81355142141 scopus 로고    scopus 로고
    • Non-coding RNAs in human disease
    • Esteller M (2011) Non-coding RNAs in human disease. Nat Rev Genet 12:861-874
    • (2011) Nat Rev Genet , vol.12 , pp. 861-874
    • Esteller, M.1
  • 6
    • 0000698101 scopus 로고    scopus 로고
    • Sensitivity optimized HCN and HCNCH experiments for 13C/15 N labeled oligonucleotides
    • Fiala R, Jiang F, Sklenář V (1998) Sensitivity optimized HCN and HCNCH experiments for 13C/15 N labeled oligonucleotides. J Biomol NMR 12:373-383
    • (1998) J Biomol NMR , vol.12 , pp. 373-383
    • Fiala, R.1    Jiang, F.2    Sklenář, V.3
  • 7
    • 0034073418 scopus 로고    scopus 로고
    • Transverse relaxation optimized triple-resonance NMR experiments for nucleic acids
    • Fiala R, Czernek J, Sklenář V (2000) Transverse relaxation optimized triple-resonance NMR experiments for nucleic acids. J Biomol NMR 16:291-302
    • (2000) J Biomol NMR , vol.16 , pp. 291-302
    • Fiala, R.1    Czernek, J.2    Sklenář, V.3
  • 10
    • 44949280676 scopus 로고
    • Band-selective radiofrequency pulses (1969)
    • 1991JMagR.93.93G
    • Geen H, Freeman R (1991) Band-selective radiofrequency pulses (1969). J Magn Reson 93:93-141
    • (1991) J Magn Reson , vol.93 , pp. 93-141
    • Geen, H.1    Freeman, R.2
  • 12
    • 0001449190 scopus 로고
    • Multiple-quantum line narrowing for measurement of H.alpha.-H.beta. J couplings in isotopically enriched proteins
    • Grzesiek S, Kuboniwa H, Hinck AP, Bax A (1995) Multiple-quantum line narrowing for measurement of H.alpha.-H.beta. J couplings in isotopically enriched proteins. J Am Chem Soc 117:5312-5315
    • (1995) J Am Chem Soc , vol.117 , pp. 5312-5315
    • Grzesiek, S.1    Kuboniwa, H.2    Hinck, A.P.3    Bax, A.4
  • 13
    • 79151472769 scopus 로고    scopus 로고
    • Spinach-a software library for simulation of spin dynamics in large spin systems
    • 2011JMagR.208.179H (San Diego, Calif: 1997)
    • Hogben HJ, Krzystyniak M, Charnock GT, Hore PJ, Kuprov I (2011) Spinach-a software library for simulation of spin dynamics in large spin systems. J Magn Reson 208:179-194 (San Diego, Calif: 1997)
    • (2011) J Magn Reson , vol.208 , pp. 179-194
    • Hogben, H.J.1    Krzystyniak, M.2    Charnock, G.T.3    Hore, P.J.4    Kuprov, I.5
  • 14
    • 0033155776 scopus 로고    scopus 로고
    • Determination of 3J(H3i, Pi+1) and 3J(H5i/5i, Pi) coupling constants in 13C-labeled nucleic acids using constant-time HMQC
    • 1999JMagR.139.181H (San Diego, Calif: 1997)
    • Hu W, Bouaziz S, Skripkin E, Kettani A (1999) Determination of 3J(H3i, Pi+1) and 3J(H5i/5i, Pi) coupling constants in 13C-labeled nucleic acids using constant-time HMQC. J Magn Reson 139:181-185 (San Diego, Calif: 1997)
    • (1999) J Magn Reson , vol.139 , pp. 181-185
    • Hu, W.1    Bouaziz, S.2    Skripkin, E.3    Kettani, A.4
  • 15
    • 42949118344 scopus 로고    scopus 로고
    • Optimization of random time domain sampling in multidimensional NMR
    • 2008JMagR.192.123K (San Diego, Calif: 1997)
    • Kazimierczuk K, Zawadzka A, Kozminski W (2008) Optimization of random time domain sampling in multidimensional NMR. J Magn Reson 192:123-130 (San Diego, Calif: 1997)
    • (2008) J Magn Reson , vol.192 , pp. 123-130
    • Kazimierczuk, K.1    Zawadzka, A.2    Kozminski, W.3
  • 16
    • 84901594784 scopus 로고    scopus 로고
    • Automated NMR resonance assignment strategy for RNA via the phosphodiester backbone based on high-dimensional through-bond APSY experiments
    • Krahenbuhl B, El Bakkali I, Schmidt E, Guntert P, Wider G (2014) Automated NMR resonance assignment strategy for RNA via the phosphodiester backbone based on high-dimensional through-bond APSY experiments. J Biomol NMR
    • (2014) J Biomol NMR
    • Krahenbuhl, B.1    El Bakkali, I.2    Schmidt, E.3    Guntert, P.4    Wider, G.5
  • 17
    • 58149365834 scopus 로고
    • Adiabatic pulses for wideband inversion and broadband decoupling
    • 1995JMagR.115.273K
    • Kupce E, Freeman R (1995) Adiabatic pulses for wideband inversion and broadband decoupling. J Magn Reson Ser A 115:273-276
    • (1995) J Magn Reson ser A , vol.115 , pp. 273-276
    • Kupce, E.1    Freeman, R.2
  • 18
    • 0028985763 scopus 로고
    • Improved measurement of 13C, 31P J coupling constants in isotopically labeled RNA
    • Legault P, Jucker FM, Pardi A (1995) Improved measurement of 13C, 31P J coupling constants in isotopically labeled RNA. FEBS Lett 362:156-160
    • (1995) FEBS Lett , vol.362 , pp. 156-160
    • Legault, P.1    Jucker, F.M.2    Pardi, A.3
  • 19
    • 0028008137 scopus 로고
    • Three-dimensional triple-resonance 1H, 13C, 31P experiment: Sequential through-bond correlation of ribose protons and intervening phosphorus along the RNA oligonucleotide backbone
    • Marino JP, Schwalbe H, Anklin C, Bermel W, Crothers DM, Griesinger C (1994) Three-dimensional triple-resonance 1H, 13C, 31P experiment: sequential through-bond correlation of ribose protons and intervening phosphorus along the RNA oligonucleotide backbone. J Am Chem Soc 116:6472-6473
    • (1994) J Am Chem Soc , vol.116 , pp. 6472-6473
    • Marino, J.P.1    Schwalbe, H.2    Anklin, C.3    Bermel, W.4    Crothers, D.M.5    Griesinger, C.6
  • 20
    • 0029202877 scopus 로고
    • Sequential correlation of anomeric ribose protons and intervening phosphorus in RNA oligonucleotides by a 1H, 13C, 31P triple resonance experiment: HCP-CCH-TOCSY
    • Marino JP, Schwalbe H, Anklin C, Bermel W, Crothers DM, Griesinger C (1995) Sequential correlation of anomeric ribose protons and intervening phosphorus in RNA oligonucleotides by a 1H, 13C, 31P triple resonance experiment: HCP-CCH-TOCSY. J Biomol NMR 5:87-92
    • (1995) J Biomol NMR , vol.5 , pp. 87-92
    • Marino, J.P.1    Schwalbe, H.2    Anklin, C.3    Bermel, W.4    Crothers, D.M.5    Griesinger, C.6
  • 21
  • 22
    • 0028222588 scopus 로고
    • The solution structure of the circular trinucleotide cr (GpGpGp) determined by NMR and molecular mechanics calculation
    • Mooren MM, Wijmenga SS, van der Marel GA, van Boom JH, Hilbers CW (1994) The solution structure of the circular trinucleotide cr (GpGpGp) determined by NMR and molecular mechanics calculation. Nucleic Acids Res 22:2658-2666
    • (1994) Nucleic Acids Res , vol.22 , pp. 2658-2666
    • Mooren, M.M.1    Wijmenga, S.S.2    Van Der Marel, G.A.3    Van Boom, J.H.4    Hilbers, C.W.5
  • 23
    • 0027199672 scopus 로고
    • An efficient procedure for assignment of the proton, carbon and nitrogen resonances in 13C/15 N labeled nucleic acids
    • Nikonowicz EP, Pardi A (1993) An efficient procedure for assignment of the proton, carbon and nitrogen resonances in 13C/15 N labeled nucleic acids. J Mol Biol 232:1141-1156
    • (1993) J Mol Biol , vol.232 , pp. 1141-1156
    • Nikonowicz, E.P.1    Pardi, A.2
  • 24
    • 0030138784 scopus 로고    scopus 로고
    • Sequential assignments in uniformly 13C-and 15 N-labelled RNAs: The HC (N, P) and HC (N, P)-CCH-TOCSY experiments
    • Ramachandran R, Sich C, Grüne M, Soskic V, Brown L (1996) Sequential assignments in uniformly 13C-and 15 N-labelled RNAs: the HC (N, P) and HC (N, P)-CCH-TOCSY experiments. J Biomol NMR 7:251-255
    • (1996) J Biomol NMR , vol.7 , pp. 251-255
    • Ramachandran, R.1    Sich, C.2    Grüne, M.3    Soskic, V.4    Brown, L.5
  • 26
    • 84855649071 scopus 로고    scopus 로고
    • Suppression of sampling artefacts in high-resolution four-dimensional NMR spectra using signal separation algorithm
    • 2012JMagR.214.91S (San Diego, Calif: 1997)
    • Stanek J, Augustyniak R, Kozminski W (2012) Suppression of sampling artefacts in high-resolution four-dimensional NMR spectra using signal separation algorithm. J Magn Reson 214:91-102 (San Diego, Calif: 1997)
    • (2012) J Magn Reson , vol.214 , pp. 91-102
    • Stanek, J.1    Augustyniak, R.2    Kozminski, W.3
  • 27
    • 84881509460 scopus 로고    scopus 로고
    • 4D Non-uniformly sampled C, C-NOESY experiment for sequential assignment of 13C, 15 N-labeled RNAs
    • Stanek J, Podbevšek P, Koźmiński W, Plavec J, Cevec M (2013a) 4D Non-uniformly sampled C, C-NOESY experiment for sequential assignment of 13C, 15 N-labeled RNAs. J Biomol NMR 57:1-9
    • (2013) J Biomol NMR , vol.57 , pp. 1-9
    • Stanek, J.1    Podbevšek, P.2    Koźmiński, W.3    Plavec, J.4    Cevec, M.5
  • 28
    • 84876469036 scopus 로고    scopus 로고
    • Probing local backbone geometries in intrinsically disordered proteins by cross-correlated NMR relaxation
    • Stanek J, Saxena S, Geist L, Konrat R, Koźmiński W (2013b) Probing local backbone geometries in intrinsically disordered proteins by cross-correlated NMR relaxation. Angew Chem Int Ed 52:4604-4606
    • (2013) Angew Chem Int Ed , vol.52 , pp. 4604-4606
    • Stanek, J.1    Saxena, S.2    Geist, L.3    Konrat, R.4    Koźmiński, W.5
  • 30
    • 0000353016 scopus 로고    scopus 로고
    • The use of NMR methods for conformational studies of nucleic acids
    • Wijmenga SS, van Buuren BNM (1998) The use of NMR methods for conformational studies of nucleic acids. Prog Nucl Magn Reson Spectrosc 32:287-387
    • (1998) Prog Nucl Magn Reson Spectrosc , vol.32 , pp. 287-387
    • Wijmenga, S.S.1    Van Buuren, B.N.M.2
  • 31
    • 84863104592 scopus 로고    scopus 로고
    • High dimensional and high resolution pulse sequences for backbone resonance assignment of intrinsically disordered proteins
    • Zawadzka-Kazimierczuk A, Kozminski W, Sanderova H, Krasny L (2012) High dimensional and high resolution pulse sequences for backbone resonance assignment of intrinsically disordered proteins. J Biomol NMR 52:329-337
    • (2012) J Biomol NMR , vol.52 , pp. 329-337
    • Zawadzka-Kazimierczuk, A.1    Kozminski, W.2    Sanderova, H.3    Krasny, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.