-
1
-
-
84874625369
-
Proteoform: a single term describing protein complexity
-
Smith, L. M., Kelleher, N. L., Proteoform: a single term describing protein complexity. Nat. Methods 2013, 10, 186-187.
-
(2013)
Nat. Methods
, vol.10
, pp. 186-187
-
-
Smith, L.M.1
Kelleher, N.L.2
-
2
-
-
79957982498
-
Hierarchical clustering of shotgun proteomics data
-
M110.003822.
-
Koskinen, V. R., Emery, P. A., Creasy, D. M., Cottrell, J. S., Hierarchical clustering of shotgun proteomics data. Mol. Cell. Proteomics 2011, 10, M110.003822.
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Koskinen, V.R.1
Emery, P.A.2
Creasy, D.M.3
Cottrell, J.S.4
-
3
-
-
0042338362
-
A statistical model for identifying proteins by tandem mass spectrometry
-
Nesvizhskii, A. I., Keller, A., Kolker, E., Aebersold, R., A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem. 2003, 75, 4646-4658.
-
(2003)
Anal. Chem.
, vol.75
, pp. 4646-4658
-
-
Nesvizhskii, A.I.1
Keller, A.2
Kolker, E.3
Aebersold, R.4
-
4
-
-
77949695293
-
Scaffold: a bioinformatic tool for validating MS/MS-based proteomic studies
-
Searle, B. C., Scaffold: a bioinformatic tool for validating MS/MS-based proteomic studies. Proteomics 2010, 10, 1265-1269.
-
(2010)
Proteomics
, vol.10
, pp. 1265-1269
-
-
Searle, B.C.1
-
5
-
-
77955595309
-
MassSieve: panning MS/MS peptide data for proteins
-
Slotta, D. J., McFarland, M. A., Markey, S. P., MassSieve: panning MS/MS peptide data for proteins. Proteomics 2010, 10, 3035-3039.
-
(2010)
Proteomics
, vol.10
, pp. 3035-3039
-
-
Slotta, D.J.1
McFarland, M.A.2
Markey, S.P.3
-
6
-
-
0036393898
-
DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics
-
Tabb, D. L., McDonald, W. H., Yates, J. R., DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J. Proteome Res. 2002, 1, 21-26.
-
(2002)
J. Proteome Res.
, vol.1
, pp. 21-26
-
-
Tabb, D.L.1
McDonald, W.H.2
Yates, J.R.3
-
7
-
-
7044241344
-
DBParser: web-based software for shotgun proteomic data analyses
-
Yang, X., Dondeti, V., Dezube, R., Maynard, D. M. et al., DBParser: web-based software for shotgun proteomic data analyses. J. Proteome Res. 2004, 3, 1002-1008.
-
(2004)
J. Proteome Res.
, vol.3
, pp. 1002-1008
-
-
Yang, X.1
Dondeti, V.2
Dezube, R.3
Maynard, D.M.4
-
8
-
-
34948874252
-
Proteomic parsimony through bipartite graph analysis improves accuracy and transparency
-
Zhang, B., Chambers, M. C., Tabb, D. L., Proteomic parsimony through bipartite graph analysis improves accuracy and transparency. J. Proteome Res. 2007, 6, 3549-3557.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 3549-3557
-
-
Zhang, B.1
Chambers, M.C.2
Tabb, D.L.3
-
9
-
-
77954502710
-
PeptideClassifier for protein inference and targeted quantitative proteomics
-
Qeli, E., Ahrens, C. H., PeptideClassifier for protein inference and targeted quantitative proteomics. Nat. Biotech. 2010, 28, 647-650.
-
(2010)
Nat. Biotech.
, vol.28
, pp. 647-650
-
-
Qeli, E.1
Ahrens, C.H.2
-
10
-
-
33646907086
-
Reporting protein identification data
-
Bradshaw, R. A., Burlingame, A. L., Carr, S., Aebersold, R., Reporting protein identification data. Mol. Cell. Proteomics 2006, 5, 787-788.
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 787-788
-
-
Bradshaw, R.A.1
Burlingame, A.L.2
Carr, S.3
Aebersold, R.4
-
11
-
-
3042735127
-
The need for guidelines in publication of peptide and protein identification data: working group on publication guidelines for peptide and protein identification data
-
Carr, S., Aebersold, R., Baldwin, M., Burlingame, A. et al., The need for guidelines in publication of peptide and protein identification data: working group on publication guidelines for peptide and protein identification data. Mol. Cell Proteomics 2004, 3, 531-533.
-
(2004)
Mol. Cell Proteomics
, vol.3
, pp. 531-533
-
-
Carr, S.1
Aebersold, R.2
Baldwin, M.3
Burlingame, A.4
-
12
-
-
31344448066
-
Guidelines for the next 10 years of proteomics
-
Wilkins, M., Appel, R., Van Eyk, J., Chung, M. et al., Guidelines for the next 10 years of proteomics. Proteomics 2006, 6, 4-8.
-
(2006)
Proteomics
, vol.6
, pp. 4-8
-
-
Wilkins, M.1
Appel, R.2
Eyk Van, J.3
Chung, M.4
-
13
-
-
27644555055
-
Interpretation of shotgun proteomic data: the protein inference problem
-
Nesvizhskii, A. I., Aebersold, R., Interpretation of shotgun proteomic data: the protein inference problem. Mol. Cell. Proteomics 2005, 4, 1419-1440.
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 1419-1440
-
-
Nesvizhskii, A.I.1
Aebersold, R.2
-
14
-
-
84885411996
-
Preparing to work with big data in proteomics - a report on the HUPO-PSI Spring workshop
-
Orchard, S., Binz, P.-A., Jones, A. R., Vizcaino, J. A. et al., Preparing to work with big data in proteomics - a report on the HUPO-PSI Spring workshop. Proteomics 2013, 13, 2931-2937.
-
(2013)
Proteomics
, vol.13
, pp. 2931-2937
-
-
Orchard, S.1
Binz, P.-A.2
Jones, A.R.3
Vizcaino, J.A.4
-
15
-
-
34249062964
-
The minimum information about a proteomics experiment (MIAPE)
-
Taylor, C. F., Paton, N. W., Lilley, K. S., Binz, P.-A. et al., The minimum information about a proteomics experiment (MIAPE). Nat. Biotech. 2007, 25, 887-893.
-
(2007)
Nat. Biotech.
, vol.25
, pp. 887-893
-
-
Taylor, C.F.1
Paton, N.W.2
Lilley, K.S.3
Binz, P.-A.4
-
16
-
-
78651082595
-
mzML-a community standard for mass spectrometry data
-
R110.000133.
-
Martens, L., Chambers, M., Sturm, M., Kessner, D. et al., mzML-a community standard for mass spectrometry data. Mol. Cell. Proteomics 2011, 10, R110.000133.
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Martens, L.1
Chambers, M.2
Sturm, M.3
Kessner, D.4
-
17
-
-
84859868686
-
The mzIdentML data standard for mass spectrometry-based proteomics results
-
M111.014381.
-
Jones, A. R., Eisenacher, M., Mayer, G., Kohlbacher, O. et al., The mzIdentML data standard for mass spectrometry-based proteomics results. Mol. Cell. Proteomics 2012, 11, M111.014381.
-
(2012)
Mol. Cell. Proteomics
, vol.11
-
-
Jones, A.R.1
Eisenacher, M.2
Mayer, G.3
Kohlbacher, O.4
-
18
-
-
84881104272
-
The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics
-
Walzer, M., Qi, D., Mayer, G., Uszkoreit, J. et al., The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics. Mol. Cell. Proteomics 2013, 12, 2332-2340.
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 2332-2340
-
-
Walzer, M.1
Qi, D.2
Mayer, G.3
Uszkoreit, J.4
-
19
-
-
84907951027
-
The mzTab data exchange format: communicating MS-based proteomics and metabolomics experimental results to a wider audience
-
pii: mcp.O113.036681.
-
Griss, J., Sachsenberg, T., Walzer, M., Gatto, L. et al., The mzTab data exchange format: communicating MS-based proteomics and metabolomics experimental results to a wider audience. Mol. Cell. Proteomics 2014, pii: mcp.O113.036681.
-
(2014)
Mol. Cell. Proteomics
-
-
Griss, J.1
Sachsenberg, T.2
Walzer, M.3
Gatto, L.4
-
20
-
-
49449097859
-
The PSI-MOD community standard for representation of protein modification data
-
Montecchi-Palazzi, L., Beavis, R., Binz, P.-A., Chalkley, R. J. et al., The PSI-MOD community standard for representation of protein modification data. Nat. Biotech. 2008, 26, 864-866.
-
(2008)
Nat. Biotech.
, vol.26
, pp. 864-866
-
-
Montecchi-Palazzi, L.1
Beavis, R.2
Binz, P.-A.3
Chalkley, R.J.4
-
21
-
-
2942568222
-
Unimod: protein modifications for mass spectrometry
-
Creasy, D. M., Cottrell, J. S., Unimod: protein modifications for mass spectrometry. Proteomics 2004, 4, 1534-1536.
-
(2004)
Proteomics
, vol.4
, pp. 1534-1536
-
-
Creasy, D.M.1
Cottrell, J.S.2
-
22
-
-
84879329259
-
The HUPO proteomics standards initiative - mass spectrometry controlled vocabulary
-
Mayer, G., Montecchi-Palazzi, L., Ovelleiro, D., Jones, A. R. et al., The HUPO proteomics standards initiative - mass spectrometry controlled vocabulary. Database 2013, 2013.
-
(2013)
Database
, vol.2013
-
-
Mayer, G.1
Montecchi-Palazzi, L.2
Ovelleiro, D.3
Jones, A.R.4
-
23
-
-
84887033019
-
tools (viewer, library and validator) that facilitate use of the peptide and protein identification standard format, termed mzIdentML
-
Ghali, F., Krishna, R., Lukasse, P., Martínez-Bartolomé, S. et al., tools (viewer, library and validator) that facilitate use of the peptide and protein identification standard format, termed mzIdentML. Mol. Cell. Proteomics 2013, 12, 3026-3035.
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 3026-3035
-
-
Ghali, F.1
Krishna, R.2
Lukasse, P.3
Martínez-Bartolomé, S.4
-
24
-
-
34547141606
-
The PSI formal document process and its implementation on the PSI website
-
Vizcaíno, J. A., Martens, L., Hermjakob, H., Julian, R. K. et al., The PSI formal document process and its implementation on the PSI website. Proteomics 2007, 7, 2355-2357.
-
(2007)
Proteomics
, vol.7
, pp. 2355-2357
-
-
Vizcaíno, J.A.1
Martens, L.2
Hermjakob, H.3
Julian, R.K.4
-
25
-
-
70949084590
-
The PSI semantic validator: a framework to check MIAPE compliance of proteomics data
-
Montecchi-Palazzi, L., Kerrien, S., Reisinger, F., Aranda, B. et al., The PSI semantic validator: a framework to check MIAPE compliance of proteomics data. Proteomics 2009, 9, 5112-5119.
-
(2009)
Proteomics
, vol.9
, pp. 5112-5119
-
-
Montecchi-Palazzi, L.1
Kerrien, S.2
Reisinger, F.3
Aranda, B.4
-
26
-
-
75549089545
-
The Proteomics Identifications database: 2010 update
-
Vizcaíno, J. A., Côté, R., Reisinger, F., Barsnes, H. et al., The Proteomics Identifications database: 2010 update. Nucl. Acids Res. 2010, 38, D736-D742.
-
(2010)
Nucl. Acids Res.
, vol.38
, pp. D736-D742
-
-
Vizcaíno, J.A.1
Côté, R.2
Reisinger, F.3
Barsnes, H.4
-
27
-
-
84891796097
-
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
-
Vizcaino, J. A., Deutsch, E. W., Wang, R., Csordas, A. et al., ProteomeXchange provides globally coordinated proteomics data submission and dissemination. Nat. Biotech. 2014, 32, 223-226.
-
(2014)
Nat. Biotech.
, vol.32
, pp. 223-226
-
-
Vizcaino, J.A.1
Deutsch, E.W.2
Wang, R.3
Csordas, A.4
|