-
1
-
-
31944451507
-
In vivo transfer of the vanA resistance gene from an Enterococcus faecium isolate of animal origin to an E. Faecium isolate of human origin in the intestines of human volunteers
-
Lester CH, Frimodt-Møller N, Sørensen TL, Monnet DL, Hammerum AM (2006) In vivo transfer of the vanA resistance gene from an Enterococcus faecium isolate of animal origin to an E. faecium isolate of human origin in the intestines of human volunteers. Antimicrob Agents Chemother 50(2):596-599.
-
(2006)
Antimicrob Agents Chemother
, vol.50
, Issue.2
, pp. 596-599
-
-
Lester, C.H.1
Frimodt-Møller, N.2
Sørensen, T.L.3
Monnet, D.L.4
Hammerum, A.M.5
-
2
-
-
58149213882
-
Phage-mediated intergeneric transfer of toxin genes
-
Chen J, Novick RP (2009) Phage-mediated intergeneric transfer of toxin genes. Science 323(5910):139-141.
-
(2009)
Science
, vol.323
, Issue.5910
, pp. 139-141
-
-
Chen, J.1
Novick, R.P.2
-
3
-
-
77950847866
-
Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota
-
Hehemann JH, et al. (2010) Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota. Nature 464(7290):908-912.
-
(2010)
Nature
, vol.464
, Issue.7290
, pp. 908-912
-
-
Hehemann, J.H.1
-
4
-
-
0034682335
-
Lateral gene transfer and the nature of bacterial innovation
-
Ochman H, Lawrence JG, Groisman EA (2000) Lateral gene transfer and the nature of bacterial innovation. Nature 405(6784):299-304.
-
(2000)
Nature
, vol.405
, Issue.6784
, pp. 299-304
-
-
Ochman, H.1
Lawrence, J.G.2
Groisman, E.A.3
-
5
-
-
43849099955
-
Microbiology in the post-genomic era
-
Medini D, et al. (2008) Microbiology in the post-genomic era. Nat Rev Microbiol 6(6):419-430.
-
(2008)
Nat Rev Microbiol
, vol.6
, Issue.6
, pp. 419-430
-
-
Medini, D.1
-
6
-
-
79851505378
-
Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes
-
Treangen TJ, Rocha EP (2011) Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes. PLoS Genet 7(1):e1001284.
-
(2011)
PLoS Genet
, vol.7
, Issue.1
, pp. e1001284
-
-
Treangen, T.J.1
Rocha, E.P.2
-
7
-
-
48249151749
-
Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution
-
Dagan T, Artzy-Randrup Y, Martin W (2008) Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution. Proc Natl Acad Sci USA 105(29):10039-10044.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.29
, pp. 10039-10044
-
-
Dagan, T.1
Artzy-Randrup, Y.2
Martin, W.3
-
8
-
-
0034780910
-
Horizontal gene transfer in prokaryotes: Quantification and classification
-
Koonin EV, Makarova KS, Aravind L (2001) Horizontal gene transfer in prokaryotes: Quantification and classification. Annu Rev Microbiol 55:709-742.
-
(2001)
Annu Rev Microbiol
, vol.55
, pp. 709-742
-
-
Koonin, E.V.1
Makarova, K.S.2
Aravind, L.3
-
11
-
-
77954265373
-
Adaptive evolution of Escherichia coli K-12 MG1655 during growth on a Nonnative carbon source, L-1, 2-propanediol
-
Lee DH, Palsson BO (2010) Adaptive evolution of Escherichia coli K-12 MG1655 during growth on a Nonnative carbon source, L-1, 2-propanediol. Appl Environ Microbiol 76(13):4158-4168.
-
(2010)
Appl Environ Microbiol
, vol.76
, Issue.13
, pp. 4158-4168
-
-
Lee, D.H.1
Palsson, B.O.2
-
12
-
-
84863550147
-
A single promoter inversion switches Photorhabdus between pathogenic and mutualistic states
-
Somvanshi VS, et al. (2012) A single promoter inversion switches Photorhabdus between pathogenic and mutualistic states. Science 337(6090):88-93.
-
(2012)
Science
, vol.337
, Issue.6090
, pp. 88-93
-
-
Somvanshi, V.S.1
-
13
-
-
84866944595
-
Genomic analysis of a key innovation in an experimental Escherichia coli population
-
Blount ZD, Barrick JE, Davidson CJ, Lenski RE (2012) Genomic analysis of a key innovation in an experimental Escherichia coli population. Nature 489(7417):513-518.
-
(2012)
Nature
, vol.489
, Issue.7417
, pp. 513-518
-
-
Blount, Z.D.1
Barrick, J.E.2
Davidson, C.J.3
Lenski, R.E.4
-
14
-
-
33645827531
-
Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: A comparative genomics approach
-
Chen SL, et al. (2006) Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: A comparative genomics approach. Proc Natl Acad Sci USA 103(15):5977-5982.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.15
, pp. 5977-5982
-
-
Chen, S.L.1
-
15
-
-
84869026028
-
Ecological adaptation in bacteria: Speciation driven by codon selection
-
Retchless AC, Lawrence JG (2012) Ecological adaptation in bacteria: Speciation driven by codon selection. Mol Biol Evol 29(12):3669-3683.
-
(2012)
Mol Biol Evol
, vol.29
, Issue.12
, pp. 3669-3683
-
-
Retchless, A.C.1
Lawrence, J.G.2
-
16
-
-
70449380939
-
Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. Coli
-
Mendoza-Vargas A, et al. (2009) Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli. PLoS ONE 4(10):e7526.
-
(2009)
PLoS ONE
, vol.4
, Issue.10
, pp. e7526
-
-
Mendoza-Vargas, A.1
-
17
-
-
78651299341
-
RegulonDB version 7.0: Transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)
-
Database issue
-
Gama-Castro S, et al. (2011) RegulonDB version 7.0: Transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units). Nucleic Acids Res 39(Database issue):D98-D105.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D98-D105
-
-
Gama-Castro, S.1
-
18
-
-
0034932337
-
DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide
-
Zheng M, et al. (2001) DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide. J Bacteriol 183(15):4562-4570.
-
(2001)
J Bacteriol
, vol.183
, Issue.15
, pp. 4562-4570
-
-
Zheng, M.1
-
19
-
-
0036623258
-
An approximately unbiased test of phylogenetic tree selection
-
Shimodaira H (2002) An approximately unbiased test of phylogenetic tree selection. Syst Biol 51(3):492-508.
-
(2002)
Syst Biol
, vol.51
, Issue.3
, pp. 492-508
-
-
Shimodaira, H.1
-
20
-
-
84882777421
-
Composability of regulatory sequences controlling transcription and translation in Escherichia coli
-
Kosuri S, et al. (2013) Composability of regulatory sequences controlling transcription and translation in Escherichia coli. Proc Natl Acad Sci USA 110(34):14024-14029.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.34
, pp. 14024-14029
-
-
Kosuri, S.1
-
21
-
-
77952530236
-
Synthesis of high-quality libraries of long (150mer) oligonucleotides by a novel depurination controlled process
-
LeProust EM, et al. (2010) Synthesis of high-quality libraries of long (150mer) oligonucleotides by a novel depurination controlled process. Nucleic Acids Res 38(8):2522-2540.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.8
, pp. 2522-2540
-
-
LeProust, E.M.1
-
22
-
-
14044257165
-
Protein thiol modifications visualized in vivo
-
Leichert LI, Jakob U (2004) Protein thiol modifications visualized in vivo. PLoS Biol 2(11):e333.
-
(2004)
PLoS Biol
, vol.2
, Issue.11
, pp. e333
-
-
Leichert, L.I.1
Jakob, U.2
-
23
-
-
14044271464
-
Oxidative stress inactivates cobalamin-independent methionine synthase (MetE) in Escherichia coli
-
Hondorp ER, Matthews RG (2004) Oxidative stress inactivates cobalamin-independent methionine synthase (MetE) in Escherichia coli. PLoS Biol 2(11):e336.
-
(2004)
PLoS Biol
, vol.2
, Issue.11
, pp. e336
-
-
Hondorp, E.R.1
Matthews, R.G.2
-
24
-
-
29144502957
-
Urinary tract infections-microbial virulence determinants and reactive oxygen species
-
Rama G, Chhina DK, Chhina RS, Sharma S (2005) Urinary tract infections-microbial virulence determinants and reactive oxygen species. Comp Immunol Microbiol Infect Dis 28(5-6):339-349.
-
(2005)
Comp Immunol Microbiol Infect Dis
, vol.28
, Issue.5-6
, pp. 339-349
-
-
Rama, G.1
Chhina, D.K.2
Chhina, R.S.3
Sharma, S.4
-
25
-
-
80053914379
-
Trends and barriers to lateral gene transfer in prokaryotes
-
Popa O, Dagan T (2011) Trends and barriers to lateral gene transfer in prokaryotes. Curr Opin Microbiol 14(5):615-623.
-
(2011)
Curr Opin Microbiol
, vol.14
, Issue.5
, pp. 615-623
-
-
Popa, O.1
Dagan, T.2
-
26
-
-
0022689021
-
Homologous recombination in Escherichia coli: Dependence on substrate length and homology
-
Shen P, Huang HV (1986) Homologous recombination in Escherichia coli: Dependence on substrate length and homology. Genetics 112(3):441-457.
-
(1986)
Genetics
, vol.112
, Issue.3
, pp. 441-457
-
-
Shen, P.1
Huang, H.V.2
-
27
-
-
0030924545
-
Molecular keys to speciation: DNA polymorphism and the control of genetic exchange in enterobacteria
-
Vulic M, Dionisio F, Taddei F, Radman M (1997) Molecular keys to speciation: DNA polymorphism and the control of genetic exchange in enterobacteria. Proc Natl Acad Sci USA 94(18):9763-9767.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, Issue.18
, pp. 9763-9767
-
-
Vulic, M.1
Dionisio, F.2
Taddei, F.3
Radman, M.4
-
28
-
-
0642312313
-
Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ
-
Omelchenko MV, Makarova KS, Wolf YI, Rogozin IB, Koonin EV (2003) Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ. Genome Biol 4(9):R55.
-
(2003)
Genome Biol
, vol.4
, Issue.9
, pp. R55
-
-
Omelchenko, M.V.1
Makarova, K.S.2
Wolf, Y.I.3
Rogozin, I.B.4
Koonin, E.V.5
-
29
-
-
79952840493
-
The complexity hypothesis revisited: Connectivity rather than function constitutes a barrier to horizontal gene transfer
-
Cohen O, Gophna U, Pupko T (2011) The complexity hypothesis revisited: Connectivity rather than function constitutes a barrier to horizontal gene transfer. Mol Biol Evol 28(4):1481-1489.
-
(2011)
Mol Biol Evol
, vol.28
, Issue.4
, pp. 1481-1489
-
-
Cohen, O.1
Gophna, U.2
Pupko, T.3
-
30
-
-
0033401933
-
Lateral genomics
-
Doolittle WF (1999) Lateral genomics. Trends Cell Biol 9(12):M5-M8.
-
(1999)
Trends Cell Biol
, vol.9
, Issue.12
, pp. M5-M8
-
-
Doolittle, W.F.1
-
31
-
-
36249021315
-
Genome-wide experimental determination of barriers to horizontal gene transfer
-
Sorek R, et al. (2007) Genome-wide experimental determination of barriers to horizontal gene transfer. Science 318(5855):1449-1452.
-
(2007)
Science
, vol.318
, Issue.5855
, pp. 1449-1452
-
-
Sorek, R.1
-
32
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215(3):403-410.
-
(1990)
J Mol Biol
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
33
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52(5):696-704.
-
(2003)
Syst Biol
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
34
-
-
0002671410
-
Some probabilistic and statistical problems in the analysis of DNA sequences
-
ed Minura RM American Mathematical Society, Providence, RI
-
Simon T (1986) Some probabilistic and statistical problems in the analysis of DNA sequences. Some Mathematical Questions in Biology: DNA Sequence Analysis, Lectures on Mathematics in the Life Sciences, ed Minura RM (American Mathematical Society, Providence, RI), Vol 17, pp 57-86.
-
(1986)
Some Mathematical Questions in Biology: DNA Sequence Analysis, Lectures on Mathematics in the Life Sciences
, vol.17
, pp. 57-86
-
-
Simon, T.1
-
35
-
-
0036139287
-
CONSEL: For assessing the confidence of phylogenetic tree selection
-
Shimodaira H, Hasegawa M (2001) CONSEL: For assessing the confidence of phylogenetic tree selection. Bioinformatics 17(12):1246-1247.
-
(2001)
Bioinformatics
, vol.17
, Issue.12
, pp. 1246-1247
-
-
Shimodaira, H.1
Hasegawa, M.2
-
36
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko KA, Wanner BL (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97(12):6640-6645.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.12
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
37
-
-
80052097306
-
A rooted net of life
-
Williams D, et al. (2011) A rooted net of life. Biol Direct 6:45.
-
(2011)
Biol Direct
, vol.6
, pp. 45
-
-
Williams, D.1
|