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Volumn 13, Issue 11, 2014, Pages 4932-4941

N-glycoprotein analysis discovers new up-regulated glycoproteins in colorectal cancer tissue

Author keywords

18O stable isotope labeling; biomarker discovery; colorectal cancer; N linked glycoproteins

Indexed keywords

GLYCOPROTEIN; OXYGEN 18; STABLE ISOTOPE; OXYGEN; TUMOR MARKER;

EID: 84908871903     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr500647y     Document Type: Article
Times cited : (42)

References (43)
  • 2
    • 84893514197 scopus 로고    scopus 로고
    • Colorectal cancer candidate biomarkers identified by tissue secretome proteome profiling
    • de Wit, M.; Kant, H.; Piersma, S. R. Colorectal cancer candidate biomarkers identified by tissue secretome proteome profiling J. Proteomics 2014, 99, 26-39
    • (2014) J. Proteomics , vol.99 , pp. 26-39
    • De Wit, M.1    Kant, H.2    Piersma, S.R.3
  • 3
    • 84884670329 scopus 로고    scopus 로고
    • Detection of cadherin-17 in human colon cancer LIM1215 cell secretome and tumour xenograft-derived interstitial fluid and plasma
    • Bernhard, O. K.; Greening, D. W.; Barnes, T. W.; Ji, H.; Simpson, R. J. Detection of cadherin-17 in human colon cancer LIM1215 cell secretome and tumour xenograft-derived interstitial fluid and plasma Biochim. Biophys. Acta 2013, 1834, 2372-2379
    • (2013) Biochim. Biophys. Acta , vol.1834 , pp. 2372-2379
    • Bernhard, O.K.1    Greening, D.W.2    Barnes, T.W.3    Ji, H.4    Simpson, R.J.5
  • 4
    • 33747030845 scopus 로고    scopus 로고
    • Protein biomarker discovery and validation: The long and uncertain path to clinical utility
    • Rifai, N.; Gillette, M. A.; Carr, S. A. Protein biomarker discovery and validation: the long and uncertain path to clinical utility Nat. Biotechnol. 2006, 24, 971-983
    • (2006) Nat. Biotechnol. , vol.24 , pp. 971-983
    • Rifai, N.1    Gillette, M.A.2    Carr, S.A.3
  • 5
    • 53849144620 scopus 로고    scopus 로고
    • Strategies for discovering novel cancer biomarkers through utilization of emerging technologies
    • Kulasingam, V.; Diamandis, E. P. Strategies for discovering novel cancer biomarkers through utilization of emerging technologies Nat. Clin. Pract. Oncol. 2008, 5, 588-599
    • (2008) Nat. Clin. Pract. Oncol. , vol.5 , pp. 588-599
    • Kulasingam, V.1    Diamandis, E.P.2
  • 6
    • 0032920520 scopus 로고    scopus 로고
    • Tumour markers of prognosis in colorectal cancer
    • McLeod, H. L.; Murray, G. I. Tumour markers of prognosis in colorectal cancer Br. J. Cancer 1999, 79, 191-203
    • (1999) Br. J. Cancer , vol.79 , pp. 191-203
    • McLeod, H.L.1    Murray, G.I.2
  • 7
    • 84881259783 scopus 로고    scopus 로고
    • Proteomics in colorectal cancer translational research: Biomarker discovery for clinical applications
    • de Wit, M.; Fijneman, R. J.; Verheul, H. M.; Meijer, G. A.; Jimenez, C. R. Proteomics in colorectal cancer translational research: biomarker discovery for clinical applications Clin. Biochem. 2013, 46, 466-479
    • (2013) Clin. Biochem. , vol.46 , pp. 466-479
    • De Wit, M.1    Fijneman, R.J.2    Verheul, H.M.3    Meijer, G.A.4    Jimenez, C.R.5
  • 8
    • 0022262016 scopus 로고
    • Aberrant glycosylation in cancer cell membranes as focused on glycolipids: Overview and perspectives
    • Hakomori, S. Aberrant glycosylation in cancer cell membranes as focused on glycolipids: overview and perspectives Cancer Res. 1985, 45, 2405-2414
    • (1985) Cancer Res. , vol.45 , pp. 2405-2414
    • Hakomori, S.1
  • 9
    • 77951930076 scopus 로고    scopus 로고
    • Glycoproteomics and clinical applications
    • Tian, Y.; Zhang, H. Glycoproteomics and clinical applications Proteomics Clin. Appl. 2010, 4, 124-132
    • (2010) Proteomics Clin. Appl. , vol.4 , pp. 124-132
    • Tian, Y.1    Zhang, H.2
  • 10
    • 84873948403 scopus 로고    scopus 로고
    • Characterization of disease-associated N-linked glycoproteins
    • Tian, Y.; Zhang, H. Characterization of disease-associated N-linked glycoproteins Proteomics 2013, 13, 504-511
    • (2013) Proteomics , vol.13 , pp. 504-511
    • Tian, Y.1    Zhang, H.2
  • 11
    • 0030480250 scopus 로고    scopus 로고
    • Tumor malignancy defined by aberrant glycosylation and sphingo(glyco)lipid metabolism
    • Hakomori, S. Tumor malignancy defined by aberrant glycosylation and sphingo(glyco)lipid metabolism Cancer Res. 1996, 56, 5309-5318
    • (1996) Cancer Res. , vol.56 , pp. 5309-5318
    • Hakomori, S.1
  • 12
    • 84863206749 scopus 로고    scopus 로고
    • Application of glycoproteomics for the discovery of biomarkers in lung cancer
    • Li, Q. K.; Gabrielson, E.; Zhang, H. Application of glycoproteomics for the discovery of biomarkers in lung cancer Proteomics Clin. Appl. 2012, 6, 244-256
    • (2012) Proteomics Clin. Appl. , vol.6 , pp. 244-256
    • Li, Q.K.1    Gabrielson, E.2    Zhang, H.3
  • 14
    • 1842414891 scopus 로고    scopus 로고
    • Tumor marker concentrations in normal and malignant tissues of colorectal cancer patients and their prognostic relevance
    • Gebauer, G.; Muller-Ruchholtz, W. Tumor marker concentrations in normal and malignant tissues of colorectal cancer patients and their prognostic relevance Anticancer Res. 1997, 17, 2939-2942
    • (1997) Anticancer Res. , vol.17 , pp. 2939-2942
    • Gebauer, G.1    Muller-Ruchholtz, W.2
  • 15
    • 0025849053 scopus 로고
    • Measurement of prostate-specific antigen in serum as a screening test for prostate cancer
    • Catalona, W. J.; Smith, D. S.; Ratliff, T. L. Measurement of prostate-specific antigen in serum as a screening test for prostate cancer N. Engl. J. Med. 1991, 324, 1156-1161
    • (1991) N. Engl. J. Med. , vol.324 , pp. 1156-1161
    • Catalona, W.J.1    Smith, D.S.2    Ratliff, T.L.3
  • 17
    • 84862238705 scopus 로고    scopus 로고
    • Determination of site-specific glycan heterogeneity on glycoproteins
    • Kolarich, D.; Jensen, P. H.; Altmann, F.; Packer, N. H. Determination of site-specific glycan heterogeneity on glycoproteins Nat. Protoc. 2012, 7, 1285-1298
    • (2012) Nat. Protoc. , vol.7 , pp. 1285-1298
    • Kolarich, D.1    Jensen, P.H.2    Altmann, F.3    Packer, N.H.4
  • 18
    • 34447097453 scopus 로고    scopus 로고
    • Analysis of protein glycosylation by mass spectrometry
    • Morelle, W.; Michalski, J. C. Analysis of protein glycosylation by mass spectrometry Nat. Protoc. 2007, 2, 1585-1602
    • (2007) Nat. Protoc. , vol.2 , pp. 1585-1602
    • Morelle, W.1    Michalski, J.C.2
  • 19
    • 5644244327 scopus 로고    scopus 로고
    • Approach to the comprehensive analysis of glycoproteins isolated from human serum using a multi-lectin affinity column
    • Yang, Z.; Hancock, W. S. Approach to the comprehensive analysis of glycoproteins isolated from human serum using a multi-lectin affinity column J. Chromatograph., A 2004, 1053, 79-88
    • (2004) J. Chromatograph., A , vol.1053 , pp. 79-88
    • Yang, Z.1    Hancock, W.S.2
  • 20
    • 0037685263 scopus 로고    scopus 로고
    • Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins
    • Kaji, H.; Saito, H.; Yamauchi, Y. Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins Nat. Biotechnol. 2003, 21, 667-672
    • (2003) Nat. Biotechnol. , vol.21 , pp. 667-672
    • Kaji, H.1    Saito, H.2    Yamauchi, Y.3
  • 21
    • 0024007567 scopus 로고
    • Biocytin hydrazide-A selective label for sialic acids, galactose, and other sugars in glycoconjugates using avidin-biotin technology
    • Bayer, E. A.; Ben-Hur, H.; Wilchek, M. Biocytin hydrazide-a selective label for sialic acids, galactose, and other sugars in glycoconjugates using avidin-biotin technology Anal. Biochem. 1988, 170, 271-281
    • (1988) Anal. Biochem. , vol.170 , pp. 271-281
    • Bayer, E.A.1    Ben-Hur, H.2    Wilchek, M.3
  • 22
    • 0038699625 scopus 로고    scopus 로고
    • Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry
    • Zhang, H.; Li, X. J.; Martin, D. B.; Aebersold, R. Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry Nat. Biotechnol. 2003, 21, 660-666
    • (2003) Nat. Biotechnol. , vol.21 , pp. 660-666
    • Zhang, H.1    Li, X.J.2    Martin, D.B.3    Aebersold, R.4
  • 23
    • 84876009601 scopus 로고    scopus 로고
    • Glycoproteomic analysis of the secretome of human endothelial cells
    • Yin, X.; Bern, M.; Xing, Q.; Ho, J.; Viner, R.; Mayr, M. Glycoproteomic analysis of the secretome of human endothelial cells Mol. Cell. Proteomics 2013, 12, 956-78
    • (2013) Mol. Cell. Proteomics , vol.12 , pp. 956-978
    • Yin, X.1    Bern, M.2    Xing, Q.3    Ho, J.4    Viner, R.5    Mayr, M.6
  • 24
    • 34547800600 scopus 로고    scopus 로고
    • Isolation of N-linked glycopeptides from plasma
    • Zhou, Y.; Aebersold, R.; Zhang, H. Isolation of N-linked glycopeptides from plasma Anal. Chem. 2007, 79, 5826-5837
    • (2007) Anal. Chem. , vol.79 , pp. 5826-5837
    • Zhou, Y.1    Aebersold, R.2    Zhang, H.3
  • 25
    • 35748972060 scopus 로고    scopus 로고
    • Semi-supervised learning for peptide identification from shotgun proteomics datasets
    • Kall, L.; Canterbury, J. D.; Weston, J.; Noble, W. S.; MacCoss, M. J. Semi-supervised learning for peptide identification from shotgun proteomics datasets Nat. Methods 2007, 4, 923-925
    • (2007) Nat. Methods , vol.4 , pp. 923-925
    • Kall, L.1    Canterbury, J.D.2    Weston, J.3    Noble, W.S.4    Maccoss, M.J.5
  • 26
    • 66749114309 scopus 로고    scopus 로고
    • 18O2-labeling in quantitative proteomic strategies: A status report
    • Fenselau, C.; Yao, X. 18O2-labeling in quantitative proteomic strategies: a status report J. Proteome Res. 2009, 8, 2140-2143
    • (2009) J. Proteome Res. , vol.8 , pp. 2140-2143
    • Fenselau, C.1    Yao, X.2
  • 27
    • 1642462855 scopus 로고    scopus 로고
    • A method for calculating 16O/18O peptide ion ratios for the relative quantification of proteomes
    • Johnson, K. L.; Muddiman, D. C. A method for calculating 16O/18O peptide ion ratios for the relative quantification of proteomes J. Am. Soc. Mass Spectrom. 2004, 15, 437-445
    • (2004) J. Am. Soc. Mass Spectrom. , vol.15 , pp. 437-445
    • Johnson, K.L.1    Muddiman, D.C.2
  • 28
    • 0033858976 scopus 로고    scopus 로고
    • Simultaneous measurement of soluble carcinoembryonic antigen and the tissue inhibitor of metalloproteinase TIMP1 serum levels for use as markers of pre-invasive to invasive colorectal cancer
    • Pellegrini, P.; Contasta, I.; Berghella, A. M.; Gargano, E.; Mammarella, C.; Adorno, D. Simultaneous measurement of soluble carcinoembryonic antigen and the tissue inhibitor of metalloproteinase TIMP1 serum levels for use as markers of pre-invasive to invasive colorectal cancer Cancer Immunol. Immunother. 2000, 49, 388-394
    • (2000) Cancer Immunol. Immunother. , vol.49 , pp. 388-394
    • Pellegrini, P.1    Contasta, I.2    Berghella, A.M.3    Gargano, E.4    Mammarella, C.5    Adorno, D.6
  • 29
    • 0029063379 scopus 로고
    • Raised carcinoembryonic antigen level as an indicator of recurrent disease in follow up of patients with colorectal cancer
    • Miles, W. F.; Greig, J. D.; Seth, J.; Sturgeon, C.; Nixon, S. J. Raised carcinoembryonic antigen level as an indicator of recurrent disease in follow up of patients with colorectal cancer Br. J. Gen. Pract. 1995, 45, 287-288
    • (1995) Br. J. Gen. Pract. , vol.45 , pp. 287-288
    • Miles, W.F.1    Greig, J.D.2    Seth, J.3    Sturgeon, C.4    Nixon, S.J.5
  • 31
    • 84885630831 scopus 로고    scopus 로고
    • Prognostic value of serum neutrophil gelatinase-associated lipocalin in metastatic and nonmetastatic colorectal cancer
    • Marti, J.; Fuster, J.; Sola, A. M. Prognostic value of serum neutrophil gelatinase-associated lipocalin in metastatic and nonmetastatic colorectal cancer World J. Surg. 2013, 37, 1103-1109
    • (2013) World J. Surg. , vol.37 , pp. 1103-1109
    • Marti, J.1    Fuster, J.2    Sola, A.M.3
  • 32
    • 3242739498 scopus 로고    scopus 로고
    • Prognostic significance of matrix metalloproteinase-2, cathepsin D, and tenascin-C expression in colorectal carcinoma
    • Sis, B.; Sagol, O.; Kupelioglu, A. Prognostic significance of matrix metalloproteinase-2, cathepsin D, and tenascin-C expression in colorectal carcinoma Pathol., Res. Pract. 2004, 200, 379-387
    • (2004) Pathol., Res. Pract. , vol.200 , pp. 379-387
    • Sis, B.1    Sagol, O.2    Kupelioglu, A.3
  • 33
    • 0030669849 scopus 로고    scopus 로고
    • Partial cloning and characterization of Slc12a2: The gene encoding the secretory Na+-K+-2Cl-cotransporter
    • Randall, J.; Thorne, T.; Delpire, E. Partial cloning and characterization of Slc12a2: the gene encoding the secretory Na+-K+-2Cl-cotransporter Am. J. Physiol. 1997, 273, C1267-C1277
    • (1997) Am. J. Physiol. , vol.273 , pp. 1267-C1277
    • Randall, J.1    Thorne, T.2    Delpire, E.3
  • 34
    • 0029074919 scopus 로고
    • Primary structure, functional expression, and chromosomal localization of the bumetanide-sensitive Na-K-Cl cotransporter in human colon
    • Payne, J. A.; Xu, J. C.; Haas, M.; Lytle, C. Y.; Ward, D.; Forbush, B., 3rd. Primary structure, functional expression, and chromosomal localization of the bumetanide-sensitive Na-K-Cl cotransporter in human colon J. Biol. Chem. 1995, 270, 17977-17985
    • (1995) J. Biol. Chem. , vol.270 , pp. 17977-17985
    • Payne, J.A.1    Xu, J.C.2    Haas, M.3    Lytle, C.Y.4    Ward, D.5    Forbush, B.6
  • 35
    • 84861569709 scopus 로고    scopus 로고
    • Regulation of brain tumor dispersal by NKCC1 through a novel role in focal adhesion regulation
    • Garzon-Muvdi, T.; Schiapparelli, P.; ap Rhys, C. Regulation of brain tumor dispersal by NKCC1 through a novel role in focal adhesion regulation PLoS Biol. 2012, 10, e1001320
    • (2012) PLoS Biol. , vol.10 , pp. 1001320
    • Garzon-Muvdi, T.1    Schiapparelli, P.2    Ap Rhys, C.3
  • 36
    • 17044454221 scopus 로고    scopus 로고
    • Identification of PLOD2 as telopeptide lysyl hydroxylase, an important enzyme in fibrosis
    • van der Slot, A. J.; Zuurmond, A. M.; Bardoel, A. F. Identification of PLOD2 as telopeptide lysyl hydroxylase, an important enzyme in fibrosis J. Biol. Chem. 2003, 278, 40967-40972
    • (2003) J. Biol. Chem. , vol.278 , pp. 40967-40972
    • Van Der Slot, A.J.1    Zuurmond, A.M.2    Bardoel, A.F.3
  • 38
    • 77949902071 scopus 로고    scopus 로고
    • Multicenter analysis of 80 solid organ transplantation recipients with post-transplantation lymphoproliferative disease: Outcomes and prognostic factors in the modern era
    • Evens, A. M.; David, K. A.; Helenowski, I. Multicenter analysis of 80 solid organ transplantation recipients with post-transplantation lymphoproliferative disease: outcomes and prognostic factors in the modern era J. Clin. Oncol. 2010, 28, 1038-1046
    • (2010) J. Clin. Oncol. , vol.28 , pp. 1038-1046
    • Evens, A.M.1    David, K.A.2    Helenowski, I.3
  • 39
    • 0031923869 scopus 로고    scopus 로고
    • Novel staging protocol for non-small-cell lung cancers according to MRP-1/CD9 and KAI1/CD82 gene expression
    • Adachi, M.; Taki, T.; Konishi, T.; Huang, C. I.; Higashiyama, M.; Miyake, M. Novel staging protocol for non-small-cell lung cancers according to MRP-1/CD9 and KAI1/CD82 gene expression J. Clin. Oncol. 1998, 16, 1397-406
    • (1998) J. Clin. Oncol. , vol.16 , pp. 1397-1406
    • Adachi, M.1    Taki, T.2    Konishi, T.3    Huang, C.I.4    Higashiyama, M.5    Miyake, M.6
  • 40
    • 0029854919 scopus 로고    scopus 로고
    • KAI1 expression is up-regulated in early pancreatic cancer and decreased in the presence of metastases
    • Guo, X.; Friess, H.; Graber, H. U. KAI1 expression is up-regulated in early pancreatic cancer and decreased in the presence of metastases Cancer Res. 1996, 56, 4876-4880
    • (1996) Cancer Res. , vol.56 , pp. 4876-4880
    • Guo, X.1    Friess, H.2    Graber, H.U.3
  • 41
    • 0030219388 scopus 로고    scopus 로고
    • Why mammalian cell surface proteins are glycoproteins
    • Gahmberg, C. G.; Tolvanen, M. Why mammalian cell surface proteins are glycoproteins Trends Biochem. Sci. 1996, 21, 308-311
    • (1996) Trends Biochem. Sci. , vol.21 , pp. 308-311
    • Gahmberg, C.G.1    Tolvanen, M.2
  • 42
    • 79952751238 scopus 로고    scopus 로고
    • Cancer genetics-guided discovery of serum biomarker signatures for diagnosis and prognosis of prostate cancer
    • Cima, I.; Schiess, R.; Wild, P. Cancer genetics-guided discovery of serum biomarker signatures for diagnosis and prognosis of prostate cancer Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 3342-3347
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 3342-3347
    • Cima, I.1    Schiess, R.2    Wild, P.3
  • 43
    • 84901061074 scopus 로고    scopus 로고
    • Identification of a seven glycopeptide signature for malignant pleural mesothelioma in human serum by selected reaction monitoring
    • Cerciello, F.; Choi, M.; Nicastri, A. Identification of a seven glycopeptide signature for malignant pleural mesothelioma in human serum by selected reaction monitoring Clin. Proteomics 2013, 10, 16
    • (2013) Clin. Proteomics , vol.10 , pp. 16
    • Cerciello, F.1    Choi, M.2    Nicastri, A.3


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