메뉴 건너뛰기




Volumn 15, Issue 4, 2004, Pages 437-445

A method for calculating 16O/18O peptide ion ratios for the relative quantification of proteomes

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BIOMARKERS; ISOTOPES; PROTEINS;

EID: 1642462855     PISSN: 10440305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jasms.2003.11.016     Document Type: Article
Times cited : (80)

References (27)
  • 1
    • 0001644020 scopus 로고    scopus 로고
    • The Human Plasma Proteome: History, Character, and Diagnostic Prospects
    • Anderson N.L., Anderson N.G. The Human Plasma Proteome History, Character, and Diagnostic Prospects. Mol. Cell Proteom. 1:2002;845-867.
    • (2002) Mol. Cell Proteom. , vol.1 , pp. 845-867
    • Anderson, N.L.1    Anderson, N.G.2
  • 2
  • 4
    • 0035384687 scopus 로고    scopus 로고
    • Proteolytic 18O-Labeling for Comparative Proteomics: Model Studies with Two Serotypes of Adenovirus
    • Yao X., Freas A., Ramirez J., Demirev P.A., Fenselau C. Proteolytic 18O-Labeling for Comparative Proteomics Model Studies with Two Serotypes of Adenovirus. Anal. Chem. 73:2001;2836-2842.
    • (2001) Anal. Chem. , vol.73 , pp. 2836-2842
    • Yao, X.1    Freas, A.2    Ramirez, J.3    Demirev, P.A.4    Fenselau, C.5
  • 6
    • 0037307837 scopus 로고    scopus 로고
    • Stable Isotope-Coded Proteomic Mass Spectrometry
    • Goshe M.B., Smith R.D. Stable Isotope-Coded Proteomic Mass Spectrometry. Curr. Opin. Biotechnol. 14:2003;101-109.
    • (2003) Curr. Opin. Biotechnol. , vol.14 , pp. 101-109
    • Goshe, M.B.1    Smith, R.D.2
  • 7
    • 0030068923 scopus 로고    scopus 로고
    • Protease-Catalyzed Incorporation of 18O into Peptide Fragments and Its Application for Protein Sequencing by Electrospray and Matrix-Assisted Laser Desorption/ Ionization Mass Spectrometry
    • Schnolzer M., Jedrzejewski P., Lehmann W.D. Protease-Catalyzed Incorporation of 18O into Peptide Fragments and Its Application for Protein Sequencing by Electrospray and Matrix-Assisted Laser Desorption/ Ionization Mass Spectrometry. Electrophoresis. 17:1996;945-953.
    • (1996) Electrophoresis , vol.17 , pp. 945-953
    • Schnolzer, M.1    Jedrzejewski, P.2    Lehmann, W.D.3
  • 9
    • 0020807419 scopus 로고
    • Preparation of Stable Isotope-Incorporated Peptide Internal Standards for Field Desorption Mass Spectrometry Quantification of Peptides in Biologic Tissue
    • Desiderio D.M., Kai M. Preparation of Stable Isotope-Incorporated Peptide Internal Standards for Field Desorption Mass Spectrometry Quantification of Peptides in Biologic Tissue. Biomed. Mass Spectrom. 10:1983;471-479.
    • (1983) Biomed. Mass Spectrom. , vol.10 , pp. 471-479
    • Desiderio, D.M.1    Kai, M.2
  • 10
    • 0035413269 scopus 로고    scopus 로고
    • Inverse 18O-Labeling Mass Spectrometry for the Rapid Identification of Marker/Target Proteins
    • Wang Y.K., Ma Z., Quinn D.F., Fu E.W. Inverse 18O-Labeling Mass Spectrometry for the Rapid Identification of Marker/Target Proteins. Anal. Chem. 73:2001;3742-3750.
    • (2001) Anal. Chem. , vol.73 , pp. 3742-3750
    • Wang, Y.K.1    Ma, Z.2    Quinn, D.F.3    Fu, E.W.4
  • 11
    • 0033915395 scopus 로고    scopus 로고
    • Quantitation of Peptides and Proteins by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Using 18O-Labeled Internal Standards
    • Mirgorodskaya O.A., Kozmin Y.P., Titov M.I., Kömer R., Sönksen C.P., Roepstorff P. Quantitation of Peptides and Proteins by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Using 18O-Labeled Internal Standards. Rapid Commun. Mass Spectrom. 14:2000;1226-1232.
    • (2000) Rapid Commun. Mass Spectrom. , vol.14 , pp. 1226-1232
    • Mirgorodskaya, O.A.1    Kozmin, Y.P.2    Titov, M.I.3    Kömer, R.4    Sönksen, C.P.5    Roepstorff, P.6
  • 13
    • 0033106490 scopus 로고    scopus 로고
    • 18O-Labeling of N-Glycosylation Sites to Improve the Identification of Gel-Separated Glycoproteins Using Peptide Mass Mapping and Database Searching
    • Kuster B., Mann M. 18O-Labeling of N-Glycosylation Sites to Improve the Identification of Gel-Separated Glycoproteins Using Peptide Mass Mapping and Database Searching. Anal. Chem. 71:1999;1431-1440.
    • (1999) Anal. Chem. , vol.71 , pp. 1431-1440
    • Kuster, B.1    Mann, M.2
  • 14
    • 0030960366 scopus 로고    scopus 로고
    • Rapid "de novo" Peptide Sequencing by a Combination of Nanoelectrospray, Isotopic Labeling, and a Quadrupole/Time-of-Flight Mass Spectrometer
    • Shevchenko A., Chernushevich I., Standing K.G., Thomson B., Wilm M., Mann M. Rapid "de novo" Peptide Sequencing by a Combination of Nanoelectrospray, Isotopic Labeling, and a Quadrupole/Time-of-Flight Mass Spectrometer. Rapid Commun. Mass Spectrom. 11:1997;1015-1024.
    • (1997) Rapid Commun. Mass Spectrom. , vol.11 , pp. 1015-1024
    • Shevchenko, A.1    Chernushevich, I.2    Standing, K.G.3    Thomson, B.4    Wilm, M.5    Mann, M.6
  • 15
    • 0242418236 scopus 로고    scopus 로고
    • Dual Electrospray Ionization Source for Confident Generation of Accurate Mass Tags Using Liquid Chromatography Fourier Transform Ion Cyclotron Resonance Mass Spectrometry
    • Nepomuceno A.I., Muddiman D.C., Bergen H.R. III, Craighead J.R., Burke M.J., Caskey P.E., Allan J.A. Dual Electrospray Ionization Source for Confident Generation of Accurate Mass Tags Using Liquid Chromatography Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. Anal. Chem. 75:2003;3411-3418.
    • (2003) Anal. Chem. , vol.75 , pp. 3411-3418
    • Nepomuceno, A.I.1    Muddiman, D.C.2    Bergen III, H.R.3    Craighead, J.R.4    Burke, M.J.5    Caskey, P.E.6    Allan, J.A.7
  • 16
    • 0035866680 scopus 로고    scopus 로고
    • High Mass Accuracy of Product Ions Produced by SORI-CID Using a Dual Electrospray Ionization Source Coupled with FTICR Mass Spectrometry
    • Flora J.W., Hannis J.C., Muddiman D.C. High Mass Accuracy of Product Ions Produced by SORI-CID Using a Dual Electrospray Ionization Source Coupled with FTICR Mass Spectrometry. Anal. Chem. 73:2001;1247-1251.
    • (2001) Anal. Chem. , vol.73 , pp. 1247-1251
    • Flora, J.W.1    Hannis, J.C.2    Muddiman, D.C.3
  • 17
    • 0034475555 scopus 로고    scopus 로고
    • A Dual Electrospray Ionization Source Combined with Hexapole Accumulation to Achieve High Mass Accuracy of Biopolymers in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry
    • Hannis J.C., Muddiman D.C. A Dual Electrospray Ionization Source Combined with Hexapole Accumulation to Achieve High Mass Accuracy of Biopolymers in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. J. Am. Soc. Mass Spectrom. 11:2000;876-883.
    • (2000) J. Am. Soc. Mass Spectrom. , vol.11 , pp. 876-883
    • Hannis, J.C.1    Muddiman, D.C.2
  • 19
    • 0037578010 scopus 로고    scopus 로고
    • Dissection of Proteolytic 18O-Labeling: Endoprotease-Catalyzed 16O to 18O Exchange of Truncated Peptide Substrates
    • Yao X., Afonso C., Fenselau C. Dissection of Proteolytic 18O-Labeling Endoprotease-Catalyzed 16O to 18O Exchange of Truncated Peptide Substrates. J. Proteome Res. 2:2003;147-152.
    • (2003) J. Proteome Res. , vol.2 , pp. 147-152
    • Yao, X.1    Afonso, C.2    Fenselau, C.3
  • 20
    • 0036391333 scopus 로고    scopus 로고
    • Proteolytic 18O-Labeling for Comparative Proteomics: Evaluation of Endoprotease Glu-C as the Catalytic Agent
    • Reynolds K.J., Yao X. ; Fenselau, C. Proteolytic 18O-Labeling for Comparative Proteomics Evaluation of Endoprotease Glu-C as the Catalytic Agent. J. Proteome Res. 1:2002;27-33.
    • (2002) J. Proteome Res. , vol.1 , pp. 27-33
    • Reynolds, K.J.1    Yao, X.2    Fenselau, C.3
  • 21
    • 0036766944 scopus 로고    scopus 로고
    • An Isotope Coding Strategy for Proteomics Involving both Amine and Carboxyl Group Labeling
    • Liu P., Regnier F.E. An Isotope Coding Strategy for Proteomics Involving both Amine and Carboxyl Group Labeling. J. Proteome Res. 1:2002;443-450.
    • (2002) J. Proteome Res. , vol.1 , pp. 443-450
    • Liu, P.1    Regnier, F.E.2
  • 22
    • 0030180572 scopus 로고    scopus 로고
    • Ultrahigh-Speed Calculation of Isotope Distributions
    • Rockwood A.L., VanOrden S.L. Ultrahigh-Speed Calculation of Isotope Distributions. Anal. Chem. 68:1996;2027-2030.
    • (1996) Anal. Chem. , vol.68 , pp. 2027-2030
    • Rockwood, A.L.1    Vanorden, S.L.2
  • 23
    • 33646894485 scopus 로고
    • A General Approach to Calculating Isotopic Distributions for Mass Spectrometry
    • Yergey J.A. A General Approach to Calculating Isotopic Distributions for Mass Spectrometry. Int. J. Mass Spectrom. Ion Phys. 52:1983;337-349.
    • (1983) Int. J. Mass Spectrom. Ion Phys. , vol.52 , pp. 337-349
    • Yergey, J.A.1
  • 24
    • 58149209843 scopus 로고
    • Determination of Monoisotopic Masses and Ion Populations for Large Biomolecules from Resolved Isotopic Distributions
    • Senko M.W., Beu S.C., McLafferty F.W. Determination of Monoisotopic Masses and Ion Populations for Large Biomolecules from Resolved Isotopic Distributions. J. Am. Society Mass Spectrom. 6:1995;229-233.
    • (1995) J. Am. Society Mass Spectrom. , vol.6 , pp. 229-233
    • Senko, M.W.1    Beu, S.C.2    McLafferty, F.W.3
  • 26
    • 0034789979 scopus 로고    scopus 로고
    • Quantitative Profiling of Differentiation-Induced Microsomal Proteins Using Isotope-Coded Affinity Tags and Mass Spectrometry
    • Han D.K., Eng J., Zhou H., Aebersold R. Quantitative Profiling of Differentiation-Induced Microsomal Proteins Using Isotope-Coded Affinity Tags and Mass Spectrometry. Nat. Biotechnol. 19:2001;946-951.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 946-951
    • Han, D.K.1    Eng, J.2    Zhou, H.3    Aebersold, R.4
  • 27
    • 0038149547 scopus 로고    scopus 로고
    • Trypsin Catalyzed 16O to 18O Exchange for Comparative Proteomics: Tandem Mass Spectrometry Comparison Using MALDI-TOF, ESI-QTOF, and ESI-Ion Trap Mass Spectrometers
    • Heller M., Mattou H., Menzel C., Yao X. Trypsin Catalyzed 16O to 18O Exchange for Comparative Proteomics Tandem Mass Spectrometry Comparison Using MALDI-TOF, ESI-QTOF, and ESI-Ion Trap Mass Spectrometers. J. Am. Soc. Mass Spectrom. 14:2003;704-718.
    • (2003) J. Am. Soc. Mass Spectrom. , vol.14 , pp. 704-718
    • Heller, M.1    Mattou, H.2    Menzel, C.3    Yao, X.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.