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Volumn 1105, Issue , 2014, Pages 61-70

Detection of DNA methylation by MeDIP and MBDCap assays: An overview of techniques

Author keywords

5 Methylcytosine; CpG island; DNA methylation; MBDCap; MeDIP

Indexed keywords

DNA ANTIBODY; DNA FRAGMENT; GENOMIC DNA; METHYL CPG BINDING PROTEIN; MONOCLONAL ANTIBODY; DNA;

EID: 84908548564     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-739-6_5     Document Type: Article
Times cited : (19)

References (22)
  • 1
    • 0002947085 scopus 로고
    • The epigenotype
    • Waddington C (1942) The epigenotype. Endeavor 1: 18-24.
    • (1942) Endeavor , vol.1 , pp. 18-24
    • Waddington, C.1
  • 2
    • 33847047461 scopus 로고    scopus 로고
    • Epigenetics: A landscape takes shape
    • Goldberg AD, Allis CD, Bernstein E (2007) Epigenetics: a landscape takes shape. Cell 128: 635-638.
    • (2007) Cell , vol.128 , pp. 635-638
    • Goldberg, A.D.1    Allis, C.D.2    Bernstein, E.3
  • 3
    • 40849139208 scopus 로고    scopus 로고
    • Epigenetics in Cancer
    • Esteller M (2008) Epigenetics in Cancer. N Engl J Med 358: 1148-1159.
    • (2008) N Engl J Med , vol.358 , pp. 1148-1159
    • Esteller, M.1
  • 4
    • 0037383398 scopus 로고    scopus 로고
    • Endogenous assays of DNA methyltransferases: Evidence for differential activities of DNMT1, DNMT2, and DNMT3 in mammalian cells in vivo
    • Liu K, Wang YF, Cantemir C, Muller MT (2003) Endogenous assays of DNA methyltransferases: evidence for differential activities of DNMT1, DNMT2, and DNMT3 in mammalian cells in vivo. Mol Cell Biol 23: 2709-2719.
    • (2003) Mol Cell Biol , vol.23 , pp. 2709-2719
    • Liu, K.1    Wang, Y.F.2    Cantemir, C.3    Muller, M.T.4
  • 6
    • 17444417521 scopus 로고    scopus 로고
    • Cancer epigenetics
    • Laird PW (2005) Cancer epigenetics. Hum Mol Genet 14: R65-R76.
    • (2005) Hum Mol Genet , vol.14 , pp. R65-R76
    • Laird, P.W.1
  • 7
    • 0036144048 scopus 로고    scopus 로고
    • DNA methylation patterns and epigenetic memory
    • Bird A (2002) DNA methylation patterns and epigenetic memory. Genes Dev 16: 6-21.
    • (2002) Genes Dev , vol.16 , pp. 6-21
    • Bird, A.1
  • 8
    • 0037372003 scopus 로고    scopus 로고
    • Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals
    • Jaenisch R, Bird A (2003) Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nat Genet 33: 245-254.
    • (2003) Nat Genet , vol.33 , pp. 245-254
    • Jaenisch, R.1    Bird, A.2
  • 9
    • 16544395591 scopus 로고    scopus 로고
    • DNA methylation and cancer
    • Das PM, Signal R (2004) DNA methylation and cancer. J Clin Oncol 22: 4632-4642.
    • (2004) J Clin Oncol , vol.22 , pp. 4632-4642
    • Das, P.M.1    Signal, R.2
  • 10
    • 1042278765 scopus 로고    scopus 로고
    • The history of cancer epigenetics
    • Feinberg AP, Tycko B (2004) The history of cancer epigenetics. Nat Rev Cancer 4: 143-153.
    • (2004) Nat Rev Cancer , vol.4 , pp. 143-153
    • Feinberg, A.P.1    Tycko, B.2
  • 11
    • 43749098985 scopus 로고    scopus 로고
    • DNA methylation landscapes: Provocative insights from epigenomics
    • Suzuki MM, Bird A (2008) DNA methylation landscapes: provocative insights from epigenomics. Nat Rev Genet 9: 465-476.
    • (2008) Nat Rev Genet , vol.9 , pp. 465-476
    • Suzuki, M.M.1    Bird, A.2
  • 12
    • 77249137168 scopus 로고    scopus 로고
    • Principles and challenges of genome-wide DNA methylation analysis
    • Laird PW (2010) Principles and challenges of genome-wide DNA methylation analysis. Nat Rev Genet 11: 191-203.
    • (2010) Nat Rev Genet , vol.11 , pp. 191-203
    • Laird, P.W.1
  • 14
    • 0033563083 scopus 로고
    • CpG island hypermethylation in human colorectal tumors is not associated with DNA methyltransferase overexpression
    • Eads CA, Danenberg KD, Kawakami K, Saltz LB, Danenberg PV, Laird PW (1995) CpG island hypermethylation in human colorectal tumors is not associated with DNA methyltransferase overexpression. Cancer Res 59: 2302-2306.
    • (1995) Cancer Res , vol.59 , pp. 2302-2306
    • Eads, C.A.1    Danenberg, K.D.2    Kawakami, K.3    Saltz, L.B.4    Danenberg, P.V.5    Laird, P.W.6
  • 15
    • 0030825309 scopus 로고    scopus 로고
    • COBRA: A sensitive and quantitative DNA methylation assay
    • Xion Z, Laird PW (1997) COBRA: a sensitive and quantitative DNA methylation assay. Nucleic Acids Res 25: 2532-2534.
    • (1997) Nucleic Acids Res , vol.25 , pp. 2532-2534
    • Xion, Z.1    Laird, P.W.2
  • 16
    • 0030738231 scopus 로고    scopus 로고
    • Rapid quantitation of methylation differences at specific sites using methylation-sensitive single nucleotide primer extension (Ms-SNuPE)
    • Gonzalgo ML, Jones PA (1997) Rapid quantitation of methylation differences at specific sites using methylation-sensitive single nucleotide primer extension (Ms-SNuPE). Nucleic Acids Res 25: 2529-2531.
    • (1997) Nucleic Acids Res , vol.25 , pp. 2529-2531
    • Gonzalgo, M.L.1    Jones, P.A.2
  • 17
    • 0036144883 scopus 로고    scopus 로고
    • Methylation-specific oligonucleotide microarray: A new potential for highthroughout methylation analysis
    • Gitan RS, Shi H, Chen CM, Yan PS, Huang TH (2002) Methylation-specific oligonucleotide microarray: a new potential for highthroughout methylation analysis. Genome Res 12: 158-164.
    • (2002) Genome Res , vol.12 , pp. 158-164
    • Gitan, R.S.1    Shi, H.2    Chen, C.M.3    Yan, P.S.4    Huang, T.H.5
  • 18
    • 0036322489 scopus 로고    scopus 로고
    • Applications of CpG island microarrays for high-throughput analysis of DNA methylation
    • Yan PS, Chen CM, Shi H, Rahmatpanah F, Wei SH, Huang TH (2002) Applications of CpG island microarrays for high-throughput analysis of DNA methylation. J Nutr 132: 2430S-2434S.
    • (2002) J Nutr , vol.132 , pp. 2430S-2434S
    • Yan, P.S.1    Chen, C.M.2    Shi, H.3    Rahmatpanah, F.4    Wei, S.H.5    Huang, T.H.6
  • 19
    • 78651251739 scopus 로고    scopus 로고
    • Comparison of methyl-DNA immuno-precipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias
    • Nair SS, Coolen MW, Stirzaker C, Song JZ, Statham AL, Strbenac D, Robinson MD, Clark SJ (2011) Comparison of methyl-DNA immuno-precipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias. Epigenetics 6: 34-44.
    • (2011) Epigenetics , vol.6 , pp. 34-44
    • Nair, S.S.1    Coolen, M.W.2    Stirzaker, C.3    Song, J.Z.4    Statham, A.L.5    Strbenac, D.6    Robinson, M.D.7    Clark, S.J.8
  • 20
    • 77449127799 scopus 로고    scopus 로고
    • MBDisolated genome sequencing provides a highthroughput and comprehensive survey of DNA methylation in the human genome
    • Serre D, Lee BH, Ting AH (2010) MBDisolated genome sequencing provides a highthroughput and comprehensive survey of DNA methylation in the human genome. Nucleic Acids Res 38: 391-399.
    • (2010) Nucleic Acids Res , vol.38 , pp. 391-399
    • Serre, D.1    Lee, B.H.2    Ting, A.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.