-
1
-
-
0025893168
-
Calcineurin is a common target of cyclophilin-cyclosporin A and FKBP-FK506 complexes
-
Liu, J. et al. Calcineurin is a common target of cyclophilin-cyclosporin A and FKBP-FK506 complexes. Cell 66, 807-815 (1991).
-
(1991)
Cell
, vol.66
, pp. 807-815
-
-
Liu, J.1
-
2
-
-
84884681688
-
Calcineurin plays key roles in the dimorphic transition and virulence of the human pathogenic zygomycete Mucor circinelloides
-
Lee, S. C., Li, A., Calo, S. & Heitman, J. Calcineurin plays key roles in the dimorphic transition and virulence of the human pathogenic zygomycete Mucor circinelloides. PLoS Pathog. 9, e1003625 (2013).
-
(2013)
PLoS Pathog.
, vol.9
, pp. e1003625
-
-
Lee, S.C.1
Li, A.2
Calo, S.3
Heitman, J.4
-
3
-
-
0025803560
-
Mucor dimorphism
-
Orlowski, M. Mucor dimorphism. Microbiol. Rev. 55, 234-258 (1991).
-
(1991)
Microbiol. Rev.
, vol.55
, pp. 234-258
-
-
Orlowski, M.1
-
4
-
-
84863234110
-
Rapamycin exerts antifungal activity in vitro and in vivo against Mucor circinelloides via FKBP12-dependent inhibition of Tor
-
Bastidas, R. J., Shertz, C. A., Lee, S. C., Heitman, J. & Cardenas, M. E. Rapamycin exerts antifungal activity in vitro and in vivo against Mucor circinelloides via FKBP12-dependent inhibition of Tor. Eukaryot. Cell 11, 270-281 (2012).
-
(2012)
Eukaryot. Cell
, vol.11
, pp. 270-281
-
-
Bastidas, R.J.1
Shertz, C.A.2
Lee, S.C.3
Heitman, J.4
Cardenas, M.E.5
-
5
-
-
0025776523
-
Targets for cell cycle arrest by the immunosuppressant rapamycin in yeast
-
Heitman, J., Movva, N. R. & Hall, M. N. Targets for cell cycle arrest by the immunosuppressant rapamycin in yeast. Science 253, 905-909 (1991).
-
(1991)
Science
, vol.253
, pp. 905-909
-
-
Heitman, J.1
Movva, N.R.2
Hall, M.N.3
-
6
-
-
0043026837
-
Two classes of small antisense RNAs in fungal RNA silencing triggered by non-integrative transgenes
-
Nicolas, F. E., Torres-Martinez, S. & Ruiz-Vazquez, R. M. Two classes of small antisense RNAs in fungal RNA silencing triggered by non-integrative transgenes. EMBO J. 22, 3983-3991 (2003).
-
(2003)
EMBO J.
, vol.22
, pp. 3983-3991
-
-
Nicolas, F.E.1
Torres-Martinez, S.2
Ruiz-Vazquez, R.M.3
-
7
-
-
77956539978
-
Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides
-
Nicolas, F. E. et al. Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides. Nucleic Acids Res. 38, 5535-5541 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 5535-5541
-
-
Nicolas, F.E.1
-
8
-
-
0026440389
-
Epimutation of repeated genes in Ascobolus immersus
-
Rhounim, L., Rossignol, J. L. & Faugeron, G. Epimutation of repeated genes in Ascobolus immersus. EMBO J. 11, 4451-4457 (1992).
-
(1992)
EMBO J.
, vol.11
, pp. 4451-4457
-
-
Rhounim, L.1
Rossignol, J.L.2
Faugeron, G.3
-
9
-
-
0030595362
-
Interchromosomal transfer of epigenetic states in Ascobolus: Transfer of DNA methylation is mechanistically related to homologous recombination
-
Colot, V., Maloisel, L. & Rossignol, J. L. Interchromosomal transfer of epigenetic states in Ascobolus: transfer of DNA methylation is mechanistically related to homologous recombination. Cell 86, 855-864 (1996).
-
(1996)
Cell
, vol.86
, pp. 855-864
-
-
Colot, V.1
Maloisel, L.2
Rossignol, J.L.3
-
10
-
-
0033539183
-
An epigenetic mutation responsible for natural variation in floral symmetry
-
Cubas, P., Vincent, C. & Coen, E. An epigenetic mutation responsible for natural variation in floral symmetry. Nature 401, 157-161 (1999).
-
(1999)
Nature
, vol.401
, pp. 157-161
-
-
Cubas, P.1
Vincent, C.2
Coen, E.3
-
11
-
-
2442424419
-
Germline epimutation of MLH1 in individuals with multiple cancers
-
Suter, C. M., Martin, D. I. K. & Ward, R. L. Germline epimutation of MLH1 in individuals with multiple cancers. Nature Genet. 36, 497-501 (2004).
-
(2004)
Nature Genet.
, vol.36
, pp. 497-501
-
-
Suter, C.M.1
Martin, D.I.K.2
Ward, R.L.3
-
12
-
-
33749122904
-
Heritable germline epimutationof MSH2 in a family with hereditary nonpolyposis colorectal cancer
-
Chan, T. L. et al. Heritable germline epimutationof MSH2 in a family with hereditary nonpolyposis colorectal cancer. Nature Genet. 38, 1178-1183 (2006).
-
(2006)
Nature Genet.
, vol.38
, pp. 1178-1183
-
-
Chan, T.L.1
-
13
-
-
33846973361
-
Inheritance of a cancer-associated MLH1 germ-line epimutation
-
Hitchins, M. P. et al. Inheritance of a cancer-associated MLH1 germ-line epimutation. N. Engl. J. Med. 356, 697-705 (2007).
-
(2007)
N. Engl. J. Med.
, vol.356
, pp. 697-705
-
-
Hitchins, M.P.1
-
14
-
-
0030267493
-
RNA as a target and an initiator of post-transcriptional gene silencing in transgenic plants
-
Baulcombe, D. C. RNA as a target and an initiator of post-transcriptional gene silencing in transgenic plants. Plant Mol. Biol. 32, 79-88 (1996).
-
(1996)
Plant Mol. Biol.
, vol.32
, pp. 79-88
-
-
Baulcombe, D.C.1
-
15
-
-
0032080877
-
A model for RNA-mediated gene silencing in higher plants
-
Wassenegger, M.& Pelissier, T. A model for RNA-mediated gene silencing in higher plants. Plant Mol. Biol. 37, 349-362 (1998).
-
(1998)
Plant Mol. Biol.
, vol.37
, pp. 349-362
-
-
Wassenegger, M.1
Pelissier, T.2
-
16
-
-
0000758988
-
Expression of single copies of a strongly expressed 35S transgene can be silenced post-transcriptionally
-
Elmayan, T. & Vaucheret, H. Expression of single copies of a strongly expressed 35S transgene can be silenced post-transcriptionally. Plant J. 9, 787-797 (1996).
-
(1996)
Plant J.
, vol.9
, pp. 787-797
-
-
Elmayan, T.1
Vaucheret, H.2
-
17
-
-
8344240473
-
A link between mRNA turnover and RNA interference in Arabidopsis
-
Gazzani, S., Lawrenson, T., Woodward, C., Headon, D. & Sablowski, R. A link between mRNA turnover and RNA interference in Arabidopsis. Science 306, 1046-1048 (2004).
-
(2004)
Science
, vol.306
, pp. 1046-1048
-
-
Gazzani, S.1
Lawrenson, T.2
Woodward, C.3
Headon, D.4
Sablowski, R.5
-
18
-
-
84855803889
-
Two distinct RNA-dependent RNA polymerases are required for initiation and amplification of RNA silencing in the basal fungus Mucor circinelloides
-
Calo, S., Nicolas, F. E., Vila, A., Torres-Martinez, S. & Ruiz-Vazquez, R. M. Two distinct RNA-dependent RNA polymerases are required for initiation and amplification of RNA silencing in the basal fungus Mucor circinelloides.Mol. Microbiol. 83, 379-394 (2012).
-
(2012)
Mol. Microbiol.
, vol.83
, pp. 379-394
-
-
Calo, S.1
Nicolas, F.E.2
Vila, A.3
Torres-Martinez, S.4
Ruiz-Vazquez, R.M.5
-
19
-
-
70349696860
-
A single dicer gene is required for efficient gene silencing associated with two classes of small antisense RNAs in Mucor circinelloides
-
de Haro, J. P. et al. A single dicer gene is required for efficient gene silencing associated with two classes of small antisense RNAs in Mucor circinelloides. Eukaryot. Cell 8, 1486-1497 (2009).
-
(2009)
Eukaryot. Cell
, vol.8
, pp. 1486-1497
-
-
De Haro, J.P.1
-
20
-
-
84880711484
-
A single argonaute gene participates in exogenous and endogenous RNAi and controls cellular functions in the basal fungus Mucor circinelloides
-
Cervantes, M. et al. A single argonaute gene participates in exogenous and endogenous RNAi and controls cellular functions in the basal fungus Mucor circinelloides. PLoS ONE 8, e69283 (2013).
-
(2013)
PLoS ONE
, vol.8
, pp. e69283
-
-
Cervantes, M.1
-
21
-
-
34247624273
-
Mutants defective in a Mucor circinelloides dicer-like gene are not compromised in siRNA silencing but display developmental defects
-
Nicolás, F. E., de Haro, J. P., Torres-Martinez, S. & Ruiz-Vazquez, R. M. Mutants defective in a Mucor circinelloides dicer-like gene are not compromised in siRNA silencing but display developmental defects. Fungal Genet. Biol. 44, 504-516 (2007).
-
(2007)
Fungal Genet. Biol.
, vol.44
, pp. 504-516
-
-
Nicolás, F.E.1
De Haro, J.P.2
Torres-Martinez, S.3
Ruiz-Vazquez, R.M.4
-
22
-
-
1342346710
-
A conserved siRNA-degrading RNase negatively regulates RNA interference in C. elegans
-
Kennedy, S., Wang, D. & Ruvkun, G. A conserved siRNA-degrading RNase negatively regulates RNA interference in C. elegans. Nature 427, 645-649 (2004).
-
(2004)
Nature
, vol.427
, pp. 645-649
-
-
Kennedy, S.1
Wang, D.2
Ruvkun, G.3
-
23
-
-
3342880124
-
Endogenous inhibitors of RNA interference in Caenorhabditis elegans
-
Timmons, L. Endogenous inhibitors of RNA interference in Caenorhabditis elegans. Bioessays 26, 715-718 (2004).
-
(2004)
Bioessays
, vol.26
, pp. 715-718
-
-
Timmons, L.1
-
24
-
-
77649253620
-
Distinct phases of siRNA synthesis in an endogenous RNAi pathway in C. elegans soma
-
Gent, J. I. et al. Distinct phases of siRNA synthesis in an endogenous RNAi pathway in C. elegans soma. Mol. Cell 37, 679-689 (2010).
-
(2010)
Mol. Cell
, vol.37
, pp. 679-689
-
-
Gent, J.I.1
-
25
-
-
84860353476
-
Different means, same end-heterochromatin formation by RNAi and RNAi-independent RNA processing factors in fission yeast
-
Reyes-Turcu, F. E. & Grewal, S. I. Different means, same end-heterochromatin formation by RNAi and RNAi-independent RNA processing factors in fission yeast. Curr. Opin. Genet. Dev. 22, 156-163 (2012).
-
(2012)
Curr. Opin. Genet. Dev.
, vol.22
, pp. 156-163
-
-
Reyes-Turcu, F.E.1
Grewal, S.I.2
-
26
-
-
84872958560
-
RNAi triggered by specialized machinery silences developmental genes and retrotransposons
-
Yamanaka, S. et al. RNAi triggered by specialized machinery silences developmental genes and retrotransposons. Nature 493, 557-560 (2013).
-
(2013)
Nature
, vol.493
, pp. 557-560
-
-
Yamanaka, S.1
-
27
-
-
79959844472
-
Sporangiospore size dimorphism is linked to virulence of Mucor circinelloides
-
Li, C. H. et al. Sporangiospore size dimorphism is linked to virulence of Mucor circinelloides. PLoS Pathog. 7, e1002086 (2011).
-
(2011)
PLoS Pathog.
, vol.7
, pp. e1002086
-
-
Li, C.H.1
-
28
-
-
84908279911
-
Analysis of a foodborne fungal pathogen outbreak: Virulence and genome of a Mucor circinelloides isolate from yogurt
-
Lee, S. C. et al. Analysis of a foodborne fungal pathogen outbreak: virulence and genome of a Mucor circinelloides isolate from yogurt. mBio 5, e01390-14 (2014).
-
(2014)
mBio
, vol.5
, pp. e01390-e01414
-
-
Lee, S.C.1
-
29
-
-
0018833178
-
High-frequency heterokaryon formation by Mucor racemosus
-
Lasker, B. A. & Borgia, P. T. High-frequency heterokaryon formation by Mucor racemosus. J. Bacteriol. 141, 565-569 (1980).
-
(1980)
J. Bacteriol.
, vol.141
, pp. 565-569
-
-
Lasker, B.A.1
Borgia, P.T.2
-
30
-
-
84859129496
-
The mating-related loci sexM and sexP of the zygomycetous fungus Mucor mucedo and their transcriptional regulation by trisporoid pheromones
-
Wetzel, J., Burmester, A., Kolbe, M. & Wostemeyer, J. The mating-related loci sexM and sexP of the zygomycetous fungus Mucor mucedo and their transcriptional regulation by trisporoid pheromones. Microbiology 158, 1016-1023 (2012).
-
(2012)
Microbiology
, vol.158
, pp. 1016-1023
-
-
Wetzel, J.1
Burmester, A.2
Kolbe, M.3
Wostemeyer, J.4
-
31
-
-
34447530926
-
Non-AUG translation initiation of a fungal RING finger repressor involved in photocarotenogenesis
-
Murcia-Flores, L., Lorca-Pascual, J. M., Garre, V., Torres-Martinez, S. & Ruiz-Vazquez, R. M. Non-AUG translation initiation of a fungal RING finger repressor involved in photocarotenogenesis. J. Biol. Chem. 282, 15394-15403 (2007).
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 15394-15403
-
-
Murcia-Flores, L.1
Lorca-Pascual, J.M.2
Garre, V.3
Torres-Martinez, S.4
Ruiz-Vazquez, R.M.5
-
32
-
-
0028792326
-
FKBP12-rapamycin target TOR2 is a vacuolar protein with an associated phosphatidylinositol-4 kinase activity
-
Cardenas, M. E. & Heitman, J. FKBP12-rapamycin target TOR2 is a vacuolar protein with an associated phosphatidylinositol-4 kinase activity. EMBO J. 14, 5892-5907 (1995).
-
(1995)
EMBO J.
, vol.14
, pp. 5892-5907
-
-
Cardenas, M.E.1
Heitman, J.2
-
33
-
-
79951811612
-
High reliability transformation of the basal fungus Mucor circinelloides by electroporation
-
Gutiérrez, A., Lopez-Garcia, S. & Garre, V. High reliability transformation of the basal fungus Mucor circinelloides by electroporation. J. Microbiol. Methods 84, 442-446 (2011).
-
(2011)
J. Microbiol. Methods
, vol.84
, pp. 442-446
-
-
Gutiérrez, A.1
Lopez-Garcia, S.2
Garre, V.3
-
34
-
-
84862174834
-
The genome portal of the Department of Energy Joint Genome Institute
-
Grigoriev, I. V. et al. The genome portal of the Department of Energy Joint Genome Institute. Nucleic Acids Res. 40, D26-D32 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D26-D32
-
-
Grigoriev, I.V.1
-
35
-
-
84876996918
-
TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim, D. et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14, R36 (2013).
-
(2013)
Genome Biol.
, vol.14
, pp. R36
-
-
Kim, D.1
-
36
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks, G. E., Hon, G., Chandonia, J. M. & Brenner, S. E. WebLogo: a sequence logo generator. Genome Res. 14, 1188-1190 (2004).
-
(2004)
Genome Res.
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
38
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S. & Huber, W. Differential expression analysis for sequence count data. Genome Biol. 11, R106 (2010).
-
(2010)
Genome Biol.
, vol.11
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
39
-
-
65649092976
-
Biopython: Freely available Python tools for computational molecular biology and bioinformatics
-
Cock, P. J. et al. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25, 1422-1423 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1422-1423
-
-
Cock, P.J.1
-
40
-
-
34247493236
-
Matplotlib: A 2D graphics environment
-
Hunter, J. D. Matplotlib: A 2D graphics environment. Comput. Sci. Eng. 9, 90-95 (2007).
-
(2007)
Comput. Sci. Eng.
, vol.9
, pp. 90-95
-
-
Hunter, J.D.1
-
41
-
-
34247500374
-
Python for scientific computing
-
Oliphant, T. E. Python for scientific computing. Comput. Sci. Eng. 9, 10-20 (2007).
-
(2007)
Comput. Sci. Eng.
, vol.9
, pp. 10-20
-
-
Oliphant, T.E.1
-
42
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar, R., Domrachev, M. & Lash, A. E. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 30, 207-210 (2002).
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
|