Profiling the T-cell receptor repertoire of patient with pleural tuberculosis by high-throughput sequencing

Immunology Letters

Volumn 162, Issue 1, 2015, Pages 170-180

  Li, Dengrui ^a   Gao, Guanju ^a   Li, Zhihui ^a   Sun, Wei ^a   Li, Xiaoxia ^a   Chen, Ning ^a   Sun, Jingjing ^a   Yang, Yonghui ^a  

^a Hebei Chest Hospital   (China)

Author keywords

Clonal expansion; Oligoclonal expansion; Peripheral blood mononuclear cells; Pleural effusion mononuclear cells; T cell receptor

Indexed keywords

NUCLEOTIDE; T LYMPHOCYTE RECEPTOR; COMPLEMENTARITY DETERMINING REGION; LYMPHOCYTE ANTIGEN RECEPTOR;

ADULT; AMINO ACID SEQUENCE; ARTICLE; BETA CHAIN; CONTROLLED STUDY; DEVELOPING COUNTRY; HIGH THROUGHPUT SEQUENCING; HUMAN; IMMUNE RESPONSE; MAJOR CLINICAL STUDY; MORBIDITY; MORTALITY; MYCOBACTERIUM TUBERCULOSIS; PERIPHERAL BLOOD MONONUCLEAR CELL; PLEURA EFFUSION; PLEURA FLUID; SEQUENCE ALIGNMENT; SPECTROSCOPY; T LYMPHOCYTE; TUBERCULOUS PLEURISY; BIOLOGY; CHEMISTRY; COMPLEMENTARITY DETERMINING REGION; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENETIC VARIABILITY; GENETICS; IMMUNOLOGY; MOLECULAR GENETICS; NUCLEIC ACID DATABASE;

AMINO ACID SEQUENCE; COMPLEMENTARITY DETERMINING REGIONS; COMPUTATIONAL BIOLOGY; DATABASES, NUCLEIC ACID; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENETIC VARIATION; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; MOLECULAR SEQUENCE DATA; RECEPTORS, ANTIGEN, T-CELL; TUBERCULOSIS, PLEURAL;

EID: 84908431010     PISSN: 01652478     EISSN: 18790542     Source Type: Journal    
DOI: 10.1016/j.imlet.2014.08.012     Document Type: Article

References (30)

1. Losi M., Bossink A., Codecasa L., Jafari C., Ernst M., Thijsen S., et al. Use of a T-cell interferon-gamma release assay for the diagnosis of tuberculous pleurisy. Eur Respir J 2007, 30:1173-1179.
2. Udwadia Z.F., Sen T. Pleural tuberculosis: an update. Curr Opin Pulm Med 2010, 16:399-406.
3. Golden M.P., Vikram H.R. Extrapulmonary tuberculosis: an overview. Am Fam Physician 2005, 72:1761-1768.
4. + CTL from lungs of Mycobacterium tuberculosis-infected mice express perforin in vivo and lyse infected macrophages. J Immunol 2000, 165:353-363.
5. Feng C.G., Bean A.G., Hooi H., Briscoe H., Britton W.J. Increase in gamma interferon-secreting CD8(+), as well as CD4(+), T cells in lungs following aerosol infection with Mycobacterium tuberculosis. Infect Immun 1999, 67:3242-3247.
6. Flynn J.L., Goldstein M.M., Triebold K.J., Koller B., Bloom B.R. Major histocompatibility complex class I-restricted T cells are required for resistance to Mycobacterium tuberculosis infection. Proc Natl Acad Sci U S A 1992, 89:12013-12017.
7. Randhawa P.S. Lymphocyte subsets in granulomas of human tuberculosis: an in situ imm unofluorescence study using monoclonal antibodies. Pathology 1990, 22:153-155.
8. Yahagi A., Umemura M., Tamura T., Kariyone A., Begum M.D., Kawakami K., et al. Suppressed induction of mycobacterial antigen-specific Th1-type CD4+ T cells in the lung after pulmonary my cobacterial infection. Int Immunol 2010, 22:307-318.
9. Souza M.C., Penido C., Costa M.F., Henrigures M.G. Mechanisms of T-lymphocyte accumulation during experimental pleural infection induced by Mycobacterium bovis BCG. Infect Immun 2008, 76:5686-5693.
10. Caramori G., Lasagna L., Casalini A.G., Adcock I.M., Casolari P., Contoli M., et al. Immune response to Mycobacterium tuberculosis infection in the parietal pleura of patients with tuberculous pleurisy. PLoS ONE 2011, 6:e22637.
11. + T cells reactive with Mycobacterium tuberculosis-infected antigen-presenting cells. J Exp Med 1998, 187:1633-1640.
12. + T cells in human tuberculosis. Proc Natl Acad Sci U S A 2000, 97:12210-12215.
13. Tully G., Kortsik C., Hohn H., Zehbe I., Hitzler W.E., Neukirch C., et al. Highly focused T cell responses in latent human pulmonary Mycobacterium tuberculosis infection. J Immunol 2005, 174:2174-2184.
14. North R.J., Jung Y.J. Immunity to tuberculosis. Annu Rev Immunol 2004, 22:599-623.
15. Warren R.L., Freeman J.D., Zeng T., Choe G., Munro S., Moore R., et al. Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes. Genome Res 2011, 21:790-797.
16. Risitano A.M., Maciejewski J.P., Green S., Plasilova M., Zeng W., Young N.S. In-vivo dominant immune responses in aplastic anaemia: molecular tracking of putatively pathogenetic T-cell clones by TCR beta-CDR3 sequencing. Lancet 2004, 364:355-364.
17. Zhou J.W., Kong C., Luo J., Cao J., Shi Y. Comparing TCR beta chain variable gene profile skewness between children with tuberculosis and BCG-vaccinated children. Arch Iran Med 2013, 16:104-108.
18. Luo W., Su J., Zhang X.B., Yang Z., Zhou M.Q., Jiang Z.M., et al. Limited T cell receptor repertoire diversity in tuberculosis patients correlates with clinical severity. PLOS ONE 2012, 7:e48117.
19. Wang C., Sanders C.M., Yang Q., Schroeder H.W., Wang E., Babrzadeh F., et al. High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets. Proc Natl Acad Sci U S A 2010, 107:1518-1523.
20. Magoc T., Salzberg S.L. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 2011, 27:2957-2963.
21. Robinson J., Mistry K., McWilliam H., Lopez R., Parham P., Marsh S.G. The IMGT/HLA database. Nucleic Acids Res 2011, 39:D1171-D1176.
22. Li Y., Chen S., Yang L., Yin Q., Geng S., Wu X., et al. TRAV and TRBV repertoire, clonality and the proliferative history of umbilical cord blood T-cells. Transpl Immunol 2007, 18:151-158.
23. Li Y., Yang L., Chen S., Zhang Y., Wu X. The TCR Vbeta repertoire usage of T-cells from cordblood induced by chronic myelogenous leukemia associated antigen. Hematology 2005, 10:387-392.
24. Puisieux I., Even J., Pannetier C., Jotereau F., Favrot M., Kourilsky P. Oligoclonality of tumor-infiltrating lymphocytes from human melanomas. J Immunol 1994, 153:2807-2818.
25. Folch G., Lefranc M.P. The human T cell receptor beta diversity (TRBD) and beta joining (TRBJ) genes. Exp Clin Immunogenet 2000, 17:107-114.
26. Folch G., Lefranc M.P. The human T cell receptor beta variable (TRBV) genes. Exp Clin Immunogenet 2000, 17:42-54.
27. Gambon-Deza F., Pacheco Carracedo M., Cerda Mota T., Montes Santiago J. Lymphocyte populations during tuberculosis infection: V beta repertoires. Infect Immun 1995, 63:1235-1240.
28. Freeman J.D., Warren R.L., Webb J.R., Nelson B.H., Holt R.A. Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing. Genome Res 2009, 19:1817-1824.
29. Robins H.S., Campregher P.V., Srivastava S.K., Wacher A., Turtle C.J., Kahsai O., et al. Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells. Blood 2009, 114:4099-4107.
30. + T effector cells in immunity against tuberculosis. J Immunol 2010, 185:3940-3947.